data_1INY # _model_server_result.job_id b1qw6w7JLAcUzJRP-ImYwg _model_server_result.datetime_utc '2024-11-25 07:24:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1iny # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":470}' # _entry.id 1INY # _exptl.entry_id 1INY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1INY _cell.length_a 184.86 _cell.length_b 184.86 _cell.length_c 184.86 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1INY _symmetry.cell_setting ? _symmetry.Int_Tables_number 211 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 3 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 2 5 4 MAN MAN C1 O1 . O2 HO2 . sing 5 ? 2 6 5 MAN MAN C1 O1 . O2 HO2 . sing 6 ? 2 7 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG ? 200 NAG 2 n B NAG 2 B 2 NAG ? 200 NAG 2 n B BMA 3 B 3 BMA ? 200 MAN 2 n B MAN 4 B 4 MAN ? 200 MAN 2 n B MAN 5 B 5 MAN ? 200 MAN 2 n B MAN 6 B 6 MAN ? 200 MAN 2 n B MAN 7 B 7 MAN ? 200 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 92 1_555 A SG CYS 337 A CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf2 A SG CYS 43 A CYS 124 1_555 A SG CYS 48 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf3 A SG CYS 95 A CYS 176 1_555 A SG CYS 113 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 A SG CYS 103 A CYS 184 1_555 A SG CYS 150 A CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 A SG CYS 152 A CYS 233 1_555 A SG CYS 157 A CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf6 A SG CYS 198 A CYS 279 1_555 A SG CYS 211 A CYS 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 A SG CYS 200 A CYS 281 1_555 A SG CYS 209 A CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf8 A SG CYS 238 A CYS 319 1_555 A SG CYS 256 A CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf9 A SG CYS 341 A CYS 422 1_555 A SG CYS 367 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale1 A ND2 ASN 5 A ASN 86 1_555 C C1 NAG . A NAG 470 1_555 ? ? ? A ? ? ? ? ? ? ? ? 1.49 ? covale ? covale2 A ND2 ASN 65 A ASN 146 1_555 D C1 NAG . A NAG 471 1_555 ? ? ? A ? ? ? ? ? ? ? ? 1.475 ? covale ? covale3 A ND2 ASN 119 A ASN 200 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.75 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.564 ? covale ? covale5 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? covale ? covale6 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? covale ? covale7 B O6 BMA . B BMA 3 1_555 B C1 MAN . B MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale8 B O2 MAN . B MAN 4 1_555 B C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale9 B O2 MAN . B MAN 5 1_555 B C1 MAN . B MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? metalc ? metalc1 A O ASP 213 A ASP 294 1_555 E CA CA . A CA 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc2 A O GLY 217 A GLY 298 1_555 E CA CA . A CA 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc3 A OD2 ASP 244 A ASP 325 1_555 E CA CA . A CA 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? metalc ? metalc4 A O ASN 266 A ASN 347 1_555 E CA CA . A CA 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc5 E CA CA . A CA 479 1_555 G O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 326 n n C1 O1 NAG sing 327 n n C1 O5 NAG sing 328 n n C1 H1 NAG sing 329 n n C2 C3 NAG sing 330 n n C2 N2 NAG sing 331 n n C2 H2 NAG sing 332 n n C3 C4 NAG sing 333 n n C3 O3 NAG sing 334 n n C3 H3 NAG sing 335 n n C4 C5 NAG sing 336 n n C4 O4 NAG sing 337 n n C4 H4 NAG sing 338 n n C5 C6 NAG sing 339 n n C5 O5 NAG sing 340 n n C5 H5 NAG sing 341 n n C6 O6 NAG sing 342 n n C6 H61 NAG sing 343 n n C6 H62 NAG sing 344 n n C7 C8 NAG sing 345 n n C7 N2 NAG sing 346 n n C7 O7 NAG doub 347 n n C8 H81 NAG sing 348 n n C8 H82 NAG sing 349 n n C8 H83 NAG sing 350 n n N2 HN2 NAG sing 351 n n O1 HO1 NAG sing 352 n n O3 HO3 NAG sing 353 n n O4 HO4 NAG sing 354 n n O6 HO6 NAG sing 355 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1INY _atom_sites.fract_transf_matrix[1][1] 0.005409 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005409 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005409 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 470 86 NAG NAG A D 3 NAG A 1 471 146 NAG NAG A E 4 CA A 1 479 470 CA CA . F 5 EQP A 1 500 500 EQP EQP . G 6 HOH A 1 501 501 HOH HOH . G 6 HOH A 2 502 502 HOH HOH . G 6 HOH A 3 503 503 HOH HOH . G 6 HOH A 4 504 504 HOH HOH . G 6 HOH A 5 505 505 HOH HOH . G 6 HOH A 6 506 506 HOH HOH . G 6 HOH A 7 507 507 HOH HOH . G 6 HOH A 8 508 508 HOH HOH . G 6 HOH A 9 509 509 HOH HOH . G 6 HOH A 10 510 510 HOH HOH . G 6 HOH A 11 511 511 HOH HOH . G 6 HOH A 12 512 512 HOH HOH . G 6 HOH A 13 513 513 HOH HOH . G 6 HOH A 14 514 514 HOH HOH . G 6 HOH A 15 515 515 HOH HOH . G 6 HOH A 16 516 516 HOH HOH . G 6 HOH A 17 517 517 HOH HOH . G 6 HOH A 18 518 518 HOH HOH . G 6 HOH A 19 519 519 HOH HOH . G 6 HOH A 20 520 520 HOH HOH . G 6 HOH A 21 521 521 HOH HOH . G 6 HOH A 22 522 522 HOH HOH . G 6 HOH A 23 523 523 HOH HOH . G 6 HOH A 24 524 524 HOH HOH . G 6 HOH A 25 525 525 HOH HOH . G 6 HOH A 26 526 526 HOH HOH . G 6 HOH A 27 527 527 HOH HOH . G 6 HOH A 28 528 528 HOH HOH . G 6 HOH A 29 529 529 HOH HOH . G 6 HOH A 30 530 530 HOH HOH . G 6 HOH A 31 531 531 HOH HOH . G 6 HOH A 32 532 532 HOH HOH . G 6 HOH A 33 533 533 HOH HOH . G 6 HOH A 34 534 534 HOH HOH . G 6 HOH A 35 535 535 HOH HOH . G 6 HOH A 36 536 536 HOH HOH . G 6 HOH A 37 537 537 HOH HOH . G 6 HOH A 38 538 538 HOH HOH . G 6 HOH A 39 539 539 HOH HOH . G 6 HOH A 40 540 540 HOH HOH . G 6 HOH A 41 541 541 HOH HOH . G 6 HOH A 42 542 542 HOH HOH . G 6 HOH A 43 543 543 HOH HOH . G 6 HOH A 44 544 544 HOH HOH . G 6 HOH A 45 545 545 HOH HOH . G 6 HOH A 46 546 546 HOH HOH . G 6 HOH A 47 547 547 HOH HOH . G 6 HOH A 48 548 548 HOH HOH . G 6 HOH A 49 549 549 HOH HOH . G 6 HOH A 50 550 550 HOH HOH . G 6 HOH A 51 551 551 HOH HOH . G 6 HOH A 52 552 552 HOH HOH . G 6 HOH A 53 553 553 HOH HOH . G 6 HOH A 54 554 554 HOH HOH . G 6 HOH A 55 555 555 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . A C 3 17.256 18.625 30.045 0.93 2 ? C1 NAG 470 A 1 HETATM 2 C C2 NAG . . A C 3 16.004 18.052 29.331 0.93 54.35 ? C2 NAG 470 A 1 HETATM 3 C C3 NAG . . A C 3 16.545 16.83 28.542 0.93 26.27 ? C3 NAG 470 A 1 HETATM 4 C C4 NAG . . A C 3 17.565 17.288 27.487 0.93 33.78 ? C4 NAG 470 A 1 HETATM 5 C C5 NAG . . A C 3 18.73 18.148 28.184 0.93 62.84 ? C5 NAG 470 A 1 HETATM 6 C C6 NAG . . A C 3 19.593 19.02 27.222 0.93 37.3 ? C6 NAG 470 A 1 HETATM 7 C C7 NAG . . A C 3 13.667 17.517 29.995 0.93 41.04 ? C7 NAG 470 A 1 HETATM 8 C C8 NAG . . A C 3 12.744 17.208 31.148 0.93 44.45 ? C8 NAG 470 A 1 HETATM 9 N N2 NAG . . A C 3 14.945 17.734 30.296 1 33.82 ? N2 NAG 470 A 1 HETATM 10 O O3 NAG . . A C 3 15.542 16.068 27.882 0.34 74.01 ? O3 NAG 470 A 1 HETATM 11 O O4 NAG . . A C 3 18.021 16.095 26.882 0.34 61.97 ? O4 NAG 470 A 1 HETATM 12 O O5 NAG . . A C 3 18.2 19.11 29.114 0.34 80.42 ? O5 NAG 470 A 1 HETATM 13 O O6 NAG . . A C 3 20.206 20.074 27.965 0.34 74.22 ? O6 NAG 470 A 1 HETATM 14 O O7 NAG . . A C 3 13.242 17.543 28.845 0.34 62.47 ? O7 NAG 470 A 1 HETATM 15 H H1 NAG . . A C 3 17.758 17.858 30.666 1 0 ? H1 NAG 470 A 1 HETATM 16 H H2 NAG . . A C 3 15.613 18.805 28.626 1 0 ? H2 NAG 470 A 1 HETATM 17 H H3 NAG . . A C 3 17.071 16.16 29.244 1 0 ? H3 NAG 470 A 1 HETATM 18 H H4 NAG . . A C 3 17.054 17.908 26.73 1 0 ? H4 NAG 470 A 1 HETATM 19 H H5 NAG . . A C 3 19.394 17.465 28.743 1 0 ? H5 NAG 470 A 1 HETATM 20 H H61 NAG . . A C 3 18.963 19.451 26.429 1 0 ? H61 NAG 470 A 1 HETATM 21 H H62 NAG . . A C 3 20.36 18.393 26.734 1 0 ? H62 NAG 470 A 1 HETATM 22 H H81 NAG . . A C 3 13.104 17.659 32.083 1 0 ? H81 NAG 470 A 1 HETATM 23 H H82 NAG . . A C 3 12.664 16.122 31.279 1 0 ? H82 NAG 470 A 1 HETATM 24 H H83 NAG . . A C 3 11.743 17.611 30.939 1 0 ? H83 NAG 470 A 1 HETATM 25 H HN2 NAG . . A C 3 15.208 17.641 31.24 1 0 ? HN2 NAG 470 A 1 HETATM 26 H HO3 NAG . . A C 3 14.7 16.551 27.932 1 0 ? HO3 NAG 470 A 1 HETATM 27 H HO4 NAG . . A C 3 17.261 15.492 26.934 1 0 ? HO4 NAG 470 A 1 HETATM 28 H HO6 NAG . . A C 3 19.755 20.128 28.817 1 0 ? HO6 NAG 470 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #