data_1IO3 # _model_server_result.job_id 5S5w5jH7tEmKvIoaBgpgIA _model_server_result.datetime_utc '2024-11-15 09:05:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1io3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":108}' # _entry.id 1IO3 # _exptl.entry_id 1IO3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1IO3 _cell.length_a 75.97 _cell.length_b 75.97 _cell.length_c 40.37 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IO3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 13 A CYS 13 1_555 B CAB HEC . A HEC 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.773 ? covale ? covale2 A SG CYS 16 A CYS 16 1_555 B CAC HEC . A HEC 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? metalc ? metalc1 A NE2 HIS 17 A HIS 17 1_555 B FE HEC . A HEC 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.884 ? metalc ? metalc2 A SD MET 79 A MET 79 1_555 B FE HEC . A HEC 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 1IO3 _atom_sites.fract_transf_matrix[1][1] 0.013163 _atom_sites.fract_transf_matrix[1][2] 0.0076 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015199 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024771 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 108 108 HEC HEM . C 3 HOH A 1 109 1 HOH HOH . C 3 HOH A 2 110 2 HOH HOH . C 3 HOH A 3 111 3 HOH HOH . C 3 HOH A 4 112 4 HOH HOH . C 3 HOH A 5 113 5 HOH HOH . C 3 HOH A 6 114 6 HOH HOH . C 3 HOH A 7 115 7 HOH HOH . C 3 HOH A 8 116 8 HOH HOH . C 3 HOH A 9 117 9 HOH HOH . C 3 HOH A 10 118 10 HOH HOH . C 3 HOH A 11 119 11 HOH HOH . C 3 HOH A 12 120 12 HOH HOH . C 3 HOH A 13 121 13 HOH HOH . C 3 HOH A 14 122 14 HOH HOH . C 3 HOH A 15 123 15 HOH HOH . C 3 HOH A 16 124 16 HOH HOH . C 3 HOH A 17 125 17 HOH HOH . C 3 HOH A 18 126 18 HOH HOH . C 3 HOH A 19 127 19 HOH HOH . C 3 HOH A 20 128 20 HOH HOH . C 3 HOH A 21 129 21 HOH HOH . C 3 HOH A 22 130 22 HOH HOH . C 3 HOH A 23 131 23 HOH HOH . C 3 HOH A 24 132 24 HOH HOH . C 3 HOH A 25 133 25 HOH HOH . C 3 HOH A 26 134 26 HOH HOH . C 3 HOH A 27 135 27 HOH HOH . C 3 HOH A 28 136 28 HOH HOH . C 3 HOH A 29 137 29 HOH HOH . C 3 HOH A 30 138 30 HOH HOH . C 3 HOH A 31 139 31 HOH HOH . C 3 HOH A 32 140 32 HOH HOH . C 3 HOH A 33 141 33 HOH HOH . C 3 HOH A 34 142 34 HOH HOH . C 3 HOH A 35 143 35 HOH HOH . C 3 HOH A 36 144 36 HOH HOH . C 3 HOH A 37 145 37 HOH HOH . C 3 HOH A 38 146 38 HOH HOH . C 3 HOH A 39 147 39 HOH HOH . C 3 HOH A 40 148 40 HOH HOH . C 3 HOH A 41 149 41 HOH HOH . C 3 HOH A 42 150 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . B 2 20.641 -19.231 13.775 1 14.31 ? FE HEC 108 A 1 HETATM 2 C CHA HEC . . . B 2 23.233 -21.356 14.202 1 13.19 ? CHA HEC 108 A 1 HETATM 3 C CHB HEC . . . B 2 22.651 -16.612 14.446 1 13.82 ? CHB HEC 108 A 1 HETATM 4 C CHC HEC . . . B 2 18.11 -17.074 12.978 1 14.67 ? CHC HEC 108 A 1 HETATM 5 C CHD HEC . . . B 2 18.514 -21.865 13.519 1 12.83 ? CHD HEC 108 A 1 HETATM 6 N NA HEC . . . B 2 22.566 -19.015 14.053 1 15.08 ? NA HEC 108 A 1 HETATM 7 C C1A HEC . . . B 2 23.524 -20.005 14.202 1 13.74 ? C1A HEC 108 A 1 HETATM 8 C C2A HEC . . . B 2 24.848 -19.442 14.469 1 12.92 ? C2A HEC 108 A 1 HETATM 9 C C3A HEC . . . B 2 24.667 -18.094 14.51 1 14.13 ? C3A HEC 108 A 1 HETATM 10 C C4A HEC . . . B 2 23.243 -17.852 14.336 1 15.88 ? C4A HEC 108 A 1 HETATM 11 C CMA HEC . . . B 2 25.733 -17.019 14.774 1 13.33 ? CMA HEC 108 A 1 HETATM 12 C CAA HEC . . . B 2 26.177 -20.185 14.744 1 14.36 ? CAA HEC 108 A 1 HETATM 13 C CBA HEC . . . B 2 26.225 -20.623 16.203 1 13.97 ? CBA HEC 108 A 1 HETATM 14 C CGA HEC . . . B 2 27.543 -21.261 16.627 1 13.52 ? CGA HEC 108 A 1 HETATM 15 O O1A HEC . . . B 2 28.431 -21.483 15.779 1 14.5 ? O1A HEC 108 A 1 HETATM 16 O O2A HEC . . . B 2 27.669 -21.546 17.83 1 16.9 ? O2A HEC 108 A 1 HETATM 17 N NB HEC . . . B 2 20.424 -17.245 13.742 1 14.53 ? NB HEC 108 A 1 HETATM 18 C C1B HEC . . . B 2 21.349 -16.308 14.151 1 14.62 ? C1B HEC 108 A 1 HETATM 19 C C2B HEC . . . B 2 20.827 -14.965 14.089 1 14.93 ? C2B HEC 108 A 1 HETATM 20 C C3B HEC . . . B 2 19.554 -15.077 13.589 1 15.11 ? C3B HEC 108 A 1 HETATM 21 C C4B HEC . . . B 2 19.312 -16.503 13.378 1 15.92 ? C4B HEC 108 A 1 HETATM 22 C CMB HEC . . . B 2 21.569 -13.697 14.511 1 11.78 ? CMB HEC 108 A 1 HETATM 23 C CAB HEC . . . B 2 18.432 -14.068 13.301 1 12.46 ? CAB HEC 108 A 1 HETATM 24 C CBB HEC . . . B 2 18.915 -13.072 12.266 1 11.36 ? CBB HEC 108 A 1 HETATM 25 N NC HEC . . . B 2 18.682 -19.414 13.334 1 15.7 ? NC HEC 108 A 1 HETATM 26 C C1C HEC . . . B 2 17.783 -18.405 12.983 1 15.35 ? C1C HEC 108 A 1 HETATM 27 C C2C HEC . . . B 2 16.469 -18.929 12.709 1 14.16 ? C2C HEC 108 A 1 HETATM 28 C C3C HEC . . . B 2 16.582 -20.276 12.942 1 14.54 ? C3C HEC 108 A 1 HETATM 29 C C4C HEC . . . B 2 17.967 -20.589 13.302 1 16.01 ? C4C HEC 108 A 1 HETATM 30 C CMC HEC . . . B 2 15.231 -18.169 12.215 1 12.56 ? CMC HEC 108 A 1 HETATM 31 C CAC HEC . . . B 2 15.566 -21.426 12.973 1 14.58 ? CAC HEC 108 A 1 HETATM 32 C CBC HEC . . . B 2 14.579 -21.493 11.81 1 10.06 ? CBC HEC 108 A 1 HETATM 33 N ND HEC . . . B 2 20.831 -21.238 13.927 1 15.71 ? ND HEC 108 A 1 HETATM 34 C C1D HEC . . . B 2 19.827 -22.194 13.762 1 14.06 ? C1D HEC 108 A 1 HETATM 35 C C2D HEC . . . B 2 20.404 -23.541 13.761 1 13.71 ? C2D HEC 108 A 1 HETATM 36 C C3D HEC . . . B 2 21.736 -23.398 14.059 1 12.53 ? C3D HEC 108 A 1 HETATM 37 C C4D HEC . . . B 2 22.001 -21.962 14.086 1 12.22 ? C4D HEC 108 A 1 HETATM 38 C CMD HEC . . . B 2 19.718 -24.857 13.457 1 9.08 ? CMD HEC 108 A 1 HETATM 39 C CAD HEC . . . B 2 22.749 -24.525 14.023 1 13.2 ? CAD HEC 108 A 1 HETATM 40 C CBD HEC . . . B 2 23.145 -24.669 12.559 1 12.41 ? CBD HEC 108 A 1 HETATM 41 C CGD HEC . . . B 2 24.045 -25.859 12.299 1 14.5 ? CGD HEC 108 A 1 HETATM 42 O O1D HEC . . . B 2 24.44 -26.068 11.126 1 13.59 ? O1D HEC 108 A 1 HETATM 43 O O2D HEC . . . B 2 24.354 -26.583 13.271 1 16.93 ? O2D HEC 108 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 43 #