data_1IO9 # _model_server_result.job_id r-hwt9p_rop05j6hJqWvhQ _model_server_result.datetime_utc '2024-11-18 02:33:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1io9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":901}' # _entry.id 1IO9 # _exptl.entry_id 1IO9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1IO9 _cell.length_a 87.587 _cell.length_b 87.587 _cell.length_c 223.151 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IO9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 A,C,E 3 1 B,D,F 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 87.587 87.587 111.5755 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 317 A CYS 317 1_555 C FE HEM . A HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc2 C FE HEM . A HEM 401 1_555 E O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.846 ? metalc ? metalc3 B SG CYS 317 B CYS 817 1_555 D FE HEM . B HEM 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc4 D FE HEM . B HEM 901 1_555 F O HOH . B HOH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.849 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 1IO9 _atom_sites.fract_transf_matrix[1][1] 0.011417 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011417 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004481 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 401 401 HEM HEM . D 2 HEM B 1 901 901 HEM HEM . E 3 HOH A 1 402 402 HOH HOH . E 3 HOH A 2 403 1 HOH HOH . E 3 HOH A 3 404 4 HOH HOH . E 3 HOH A 4 405 6 HOH HOH . E 3 HOH A 5 406 7 HOH HOH . E 3 HOH A 6 407 9 HOH HOH . E 3 HOH A 7 408 11 HOH HOH . E 3 HOH A 8 409 13 HOH HOH . E 3 HOH A 9 410 15 HOH HOH . E 3 HOH A 10 411 16 HOH HOH . E 3 HOH A 11 412 17 HOH HOH . E 3 HOH A 12 413 19 HOH HOH . E 3 HOH A 13 414 21 HOH HOH . E 3 HOH A 14 415 23 HOH HOH . E 3 HOH A 15 416 24 HOH HOH . E 3 HOH A 16 417 27 HOH HOH . E 3 HOH A 17 418 35 HOH HOH . E 3 HOH A 18 419 36 HOH HOH . E 3 HOH A 19 420 37 HOH HOH . E 3 HOH A 20 421 40 HOH HOH . E 3 HOH A 21 422 41 HOH HOH . E 3 HOH A 22 423 42 HOH HOH . E 3 HOH A 23 424 44 HOH HOH . E 3 HOH A 24 425 48 HOH HOH . E 3 HOH A 25 426 49 HOH HOH . E 3 HOH A 26 427 53 HOH HOH . E 3 HOH A 27 428 54 HOH HOH . E 3 HOH A 28 429 55 HOH HOH . E 3 HOH A 29 430 56 HOH HOH . E 3 HOH A 30 431 57 HOH HOH . E 3 HOH A 31 432 59 HOH HOH . E 3 HOH A 32 433 60 HOH HOH . E 3 HOH A 33 434 61 HOH HOH . E 3 HOH A 34 435 64 HOH HOH . E 3 HOH A 35 436 67 HOH HOH . E 3 HOH A 36 437 68 HOH HOH . E 3 HOH A 37 438 69 HOH HOH . E 3 HOH A 38 439 70 HOH HOH . E 3 HOH A 39 440 71 HOH HOH . E 3 HOH A 40 441 73 HOH HOH . E 3 HOH A 41 442 76 HOH HOH . E 3 HOH A 42 443 77 HOH HOH . E 3 HOH A 43 444 78 HOH HOH . E 3 HOH A 44 445 79 HOH HOH . E 3 HOH A 45 446 81 HOH HOH . E 3 HOH A 46 447 82 HOH HOH . E 3 HOH A 47 448 84 HOH HOH . E 3 HOH A 48 449 85 HOH HOH . E 3 HOH A 49 450 86 HOH HOH . E 3 HOH A 50 451 88 HOH HOH . E 3 HOH A 51 452 92 HOH HOH . E 3 HOH A 52 453 94 HOH HOH . E 3 HOH A 53 454 95 HOH HOH . E 3 HOH A 54 455 98 HOH HOH . E 3 HOH A 55 456 100 HOH HOH . E 3 HOH A 56 457 101 HOH HOH . E 3 HOH A 57 458 102 HOH HOH . E 3 HOH A 58 459 106 HOH HOH . E 3 HOH A 59 460 107 HOH HOH . E 3 HOH A 60 461 109 HOH HOH . E 3 HOH A 61 462 111 HOH HOH . F 3 HOH B 1 2 2 HOH HOH . F 3 HOH B 2 3 3 HOH HOH . F 3 HOH B 3 5 5 HOH HOH . F 3 HOH B 4 8 8 HOH HOH . F 3 HOH B 5 10 10 HOH HOH . F 3 HOH B 6 12 12 HOH HOH . F 3 HOH B 7 14 14 HOH HOH . F 3 HOH B 8 18 18 HOH HOH . F 3 HOH B 9 20 20 HOH HOH . F 3 HOH B 10 22 22 HOH HOH . F 3 HOH B 11 25 25 HOH HOH . F 3 HOH B 12 26 26 HOH HOH . F 3 HOH B 13 28 28 HOH HOH . F 3 HOH B 14 29 29 HOH HOH . F 3 HOH B 15 30 30 HOH HOH . F 3 HOH B 16 31 31 HOH HOH . F 3 HOH B 17 32 32 HOH HOH . F 3 HOH B 18 33 33 HOH HOH . F 3 HOH B 19 34 34 HOH HOH . F 3 HOH B 20 38 38 HOH HOH . F 3 HOH B 21 39 39 HOH HOH . F 3 HOH B 22 43 43 HOH HOH . F 3 HOH B 23 45 45 HOH HOH . F 3 HOH B 24 46 46 HOH HOH . F 3 HOH B 25 47 47 HOH HOH . F 3 HOH B 26 50 50 HOH HOH . F 3 HOH B 27 51 51 HOH HOH . F 3 HOH B 28 52 52 HOH HOH . F 3 HOH B 29 58 58 HOH HOH . F 3 HOH B 30 62 62 HOH HOH . F 3 HOH B 31 63 63 HOH HOH . F 3 HOH B 32 65 65 HOH HOH . F 3 HOH B 33 66 66 HOH HOH . F 3 HOH B 34 72 72 HOH HOH . F 3 HOH B 35 74 74 HOH HOH . F 3 HOH B 36 75 75 HOH HOH . F 3 HOH B 37 80 80 HOH HOH . F 3 HOH B 38 83 83 HOH HOH . F 3 HOH B 39 87 87 HOH HOH . F 3 HOH B 40 89 89 HOH HOH . F 3 HOH B 41 90 90 HOH HOH . F 3 HOH B 42 91 91 HOH HOH . F 3 HOH B 43 93 93 HOH HOH . F 3 HOH B 44 96 96 HOH HOH . F 3 HOH B 45 97 97 HOH HOH . F 3 HOH B 46 99 99 HOH HOH . F 3 HOH B 47 103 103 HOH HOH . F 3 HOH B 48 104 104 HOH HOH . F 3 HOH B 49 105 105 HOH HOH . F 3 HOH B 50 108 108 HOH HOH . F 3 HOH B 51 110 110 HOH HOH . F 3 HOH B 52 112 112 HOH HOH . F 3 HOH B 53 113 113 HOH HOH . F 3 HOH B 54 114 114 HOH HOH . F 3 HOH B 55 115 115 HOH HOH . F 3 HOH B 56 902 902 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 2 35.254 42.238 86.78 1 24.99 ? CHA HEM 901 B 1 HETATM 2 C CHB HEM . . . D 2 33.878 39.815 90.761 1 25.83 ? CHB HEM 901 B 1 HETATM 3 C CHC HEM . . . D 2 32.235 36.213 87.952 1 25.49 ? CHC HEM 901 B 1 HETATM 4 C CHD HEM . . . D 2 34.185 38.395 83.98 1 24 ? CHD HEM 901 B 1 HETATM 5 C C1A HEM . . . D 2 34.854 41.946 88.086 1 23.39 ? C1A HEM 901 B 1 HETATM 6 C C2A HEM . . . D 2 35.031 42.844 89.231 1 19.79 ? C2A HEM 901 B 1 HETATM 7 C C3A HEM . . . D 2 34.711 42.132 90.359 1 21.75 ? C3A HEM 901 B 1 HETATM 8 C C4A HEM . . . D 2 34.305 40.811 89.897 1 20.11 ? C4A HEM 901 B 1 HETATM 9 C CMA HEM . . . D 2 34.723 42.631 91.797 1 15.04 ? CMA HEM 901 B 1 HETATM 10 C CAA HEM . . . D 2 35.429 44.305 89.176 1 16.51 ? CAA HEM 901 B 1 HETATM 11 C CBA HEM . . . D 2 36.925 44.413 89.331 1 17.87 ? CBA HEM 901 B 1 HETATM 12 C CGA HEM . . . D 2 37.395 45.843 89.513 1 23.1 ? CGA HEM 901 B 1 HETATM 13 O O1A HEM . . . D 2 36.577 46.771 89.368 1 28.09 ? O1A HEM 901 B 1 HETATM 14 O O2A HEM . . . D 2 38.593 46.047 89.801 1 28.12 ? O2A HEM 901 B 1 HETATM 15 C C1B HEM . . . D 2 33.407 38.57 90.376 1 24.73 ? C1B HEM 901 B 1 HETATM 16 C C2B HEM . . . D 2 32.701 37.672 91.331 1 25.01 ? C2B HEM 901 B 1 HETATM 17 C C3B HEM . . . D 2 32.255 36.667 90.499 1 24.96 ? C3B HEM 901 B 1 HETATM 18 C C4B HEM . . . D 2 32.592 36.972 89.08 1 22.11 ? C4B HEM 901 B 1 HETATM 19 C CMB HEM . . . D 2 32.307 37.906 92.813 1 21.24 ? CMB HEM 901 B 1 HETATM 20 C CAB HEM . . . D 2 31.688 35.482 90.915 1 28.35 ? CAB HEM 901 B 1 HETATM 21 C CBB HEM . . . D 2 30.478 35.361 91.593 1 32.24 ? CBB HEM 901 B 1 HETATM 22 C C1C HEM . . . D 2 32.578 36.522 86.62 1 23.02 ? C1C HEM 901 B 1 HETATM 23 C C2C HEM . . . D 2 32.23 35.72 85.443 1 25.62 ? C2C HEM 901 B 1 HETATM 24 C C3C HEM . . . D 2 32.86 36.248 84.335 1 28.63 ? C3C HEM 901 B 1 HETATM 25 C C4C HEM . . . D 2 33.586 37.434 84.837 1 26.41 ? C4C HEM 901 B 1 HETATM 26 C CMC HEM . . . D 2 31.256 34.552 85.394 1 16.8 ? CMC HEM 901 B 1 HETATM 27 C CAC HEM . . . D 2 32.675 35.798 83.017 1 27.17 ? CAC HEM 901 B 1 HETATM 28 C CBC HEM . . . D 2 33.752 35.46 82.188 1 35.42 ? CBC HEM 901 B 1 HETATM 29 C C1D HEM . . . D 2 34.593 39.661 84.384 1 24.44 ? C1D HEM 901 B 1 HETATM 30 C C2D HEM . . . D 2 35.19 40.644 83.501 1 27.2 ? C2D HEM 901 B 1 HETATM 31 C C3D HEM . . . D 2 35.535 41.688 84.312 1 25.21 ? C3D HEM 901 B 1 HETATM 32 C C4D HEM . . . D 2 35.138 41.368 85.681 1 25.34 ? C4D HEM 901 B 1 HETATM 33 C CMD HEM . . . D 2 35.483 40.523 82.007 1 21.12 ? CMD HEM 901 B 1 HETATM 34 C CAD HEM . . . D 2 36.172 42.988 83.868 1 22.15 ? CAD HEM 901 B 1 HETATM 35 C CBD HEM . . . D 2 35.021 43.906 83.517 1 21.82 ? CBD HEM 901 B 1 HETATM 36 C CGD HEM . . . D 2 35.471 45.329 83.267 1 22.41 ? CGD HEM 901 B 1 HETATM 37 O O1D HEM . . . D 2 34.633 46.138 82.807 1 18.17 ? O1D HEM 901 B 1 HETATM 38 O O2D HEM . . . D 2 36.66 45.634 83.528 1 19.56 ? O2D HEM 901 B 1 HETATM 39 N NA HEM . . . D 2 34.35 40.708 88.495 1 21.77 ? NA HEM 901 B 1 HETATM 40 N NB HEM . . . D 2 33.3 38.14 89.007 1 23.11 ? NB HEM 901 B 1 HETATM 41 N NC HEM . . . D 2 33.341 37.605 86.242 1 22.77 ? NC HEM 901 B 1 HETATM 42 N ND HEM . . . D 2 34.559 40.11 85.729 1 25.89 ? ND HEM 901 B 1 HETATM 43 FE FE HEM . . . D 2 33.821 39.137 87.353 1 20.89 ? FE HEM 901 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 43 #