data_1IOE # _model_server_result.job_id t45JoWFFqk6DC43S76RLXw _model_server_result.datetime_utc '2024-12-30 17:18:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ioe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 1IOE # _exptl.entry_id 1IOE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 557.061 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(-)-7-[(6-CHLORO-2-NAPHTHALENYL)SULFONYL]TETRAHYDRO-8A-(METHOXYMETHYL)-1'-(4-PYRIDINYL)-SPIRO[5H-OXAZOLO[3,2-A]PYRAZINE-2(3H),4'-PIPERIDIN]-5-ONE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1IOE _cell.length_a 72.7 _cell.length_b 78.17 _cell.length_c 56.04 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IOE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 12 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 27 A CYS 42 1_555 A SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 108 A CYS 122 1_555 B SG CYS 89 L CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 156 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf5 A SG CYS 181 A CYS 191 1_555 A SG CYS 209 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 B SG CYS 46 L CYS 89 1_555 B SG CYS 57 L CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 B SG CYS 53 L CYS 96 1_555 B SG CYS 66 L CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf8 B SG CYS 68 L CYS 111 1_555 B SG CYS 81 L CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc1 A OD1 ASP 56 A ASP 70 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? metalc ? metalc2 A O ASN 58 A ASN 72 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? metalc ? metalc3 A OE1 GLU 63 A GLU 77 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? # _chem_comp.formula 'C27 H29 Cl N4 O5 S' _chem_comp.formula_weight 557.061 _chem_comp.id XMA _chem_comp.mon_nstd_flag . _chem_comp.name "(-)-7-[(6-CHLORO-2-NAPHTHALENYL)SULFONYL]TETRAHYDRO-8A-(METHOXYMETHYL)-1'-(4-PYRIDINYL)-SPIRO[5H-OXAZOLO[3,2-A]PYRAZINE-2(3H),4'-PIPERIDIN]-5-ONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 XMA doub 374 n y C1 C6 XMA sing 375 n y C1 H1 XMA sing 376 n n C2 C5 XMA sing 377 n y C2 S12 XMA sing 378 n n C3 C4 XMA sing 379 n y C3 C6 XMA doub 380 n y C3 C9 XMA sing 381 n y C4 C5 XMA doub 382 n y C4 H4 XMA sing 383 n n C5 H5 XMA sing 384 n n C6 C8 XMA sing 385 n y CL7 C11 XMA sing 386 n n C8 C10 XMA doub 387 n y C8 H8 XMA sing 388 n n C9 C11 XMA doub 389 n y C9 H9 XMA sing 390 n n C10 C11 XMA sing 391 n y C10 H10 XMA sing 392 n n S12 O13 XMA doub 393 n n S12 O14 XMA doub 394 n n S12 N18 XMA sing 395 n n C15 O16 XMA doub 396 n n C15 C17 XMA sing 397 n n C15 N24 XMA sing 398 n n C17 N18 XMA sing 399 n n C17 H171 XMA sing 400 n n C17 H172 XMA sing 401 n n N18 C23 XMA sing 402 n n C19 C20 XMA sing 403 n n C19 C23 XMA sing 404 n n C19 N24 XMA sing 405 n n C19 O34 XMA sing 406 n n C20 O21 XMA sing 407 n n C20 H201 XMA sing 408 n n C20 H202 XMA sing 409 n n O21 C22 XMA sing 410 n n C22 H221 XMA sing 411 n n C22 H222 XMA sing 412 n n C22 H223 XMA sing 413 n n C23 H231 XMA sing 414 n n C23 H232 XMA sing 415 n n N24 C25 XMA sing 416 n n C25 C33 XMA sing 417 n n C25 H251 XMA sing 418 n n C25 H252 XMA sing 419 n n C26 C29 XMA doub 420 n y C26 N36 XMA sing 421 n y C26 H26 XMA sing 422 n n N27 C28 XMA sing 423 n n N27 C30 XMA sing 424 n n N27 C32 XMA sing 425 n n C28 C29 XMA sing 426 n y C28 C31 XMA doub 427 n y C29 H29 XMA sing 428 n n C30 C35 XMA sing 429 n n C30 H301 XMA sing 430 n n C30 H302 XMA sing 431 n n C31 C37 XMA sing 432 n y C31 H31 XMA sing 433 n n C32 C38 XMA sing 434 n n C32 H321 XMA sing 435 n n C32 H322 XMA sing 436 n n C33 O34 XMA sing 437 n n C33 C35 XMA sing 438 n n C33 C38 XMA sing 439 n n C35 H351 XMA sing 440 n n C35 H352 XMA sing 441 n n N36 C37 XMA doub 442 n y C37 H37 XMA sing 443 n n C38 H381 XMA sing 444 n n C38 H382 XMA sing 445 n n # _atom_sites.entry_id 1IOE _atom_sites.fract_transf_matrix[1][1] 0.013755 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012793 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017844 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 301 301 CA CA . D 4 XMA A 1 401 401 XMA XMA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 XMA . . . D 4 8.347 25.084 7.85 1 28.96 ? C1 XMA 401 A 1 HETATM 2 C C2 XMA . . . D 4 8.94 23.806 7.493 1 27.51 ? C2 XMA 401 A 1 HETATM 3 C C3 XMA . . . D 4 8.431 24.412 10.366 1 26.66 ? C3 XMA 401 A 1 HETATM 4 C C4 XMA . . . D 4 9.031 23.115 9.984 1 26.61 ? C4 XMA 401 A 1 HETATM 5 C C5 XMA . . . D 4 9.279 22.822 8.589 1 28.16 ? C5 XMA 401 A 1 HETATM 6 C C6 XMA . . . D 4 8.075 25.442 9.233 1 28.12 ? C6 XMA 401 A 1 HETATM 7 CL CL7 XMA . . . D 4 7.259 26.541 13.705 1 35.79 ? CL7 XMA 401 A 1 HETATM 8 C C8 XMA . . . D 4 7.481 26.746 9.597 1 28.02 ? C8 XMA 401 A 1 HETATM 9 C C9 XMA . . . D 4 8.158 24.791 11.742 1 28.76 ? C9 XMA 401 A 1 HETATM 10 C C10 XMA . . . D 4 7.242 27.05 10.975 1 29.26 ? C10 XMA 401 A 1 HETATM 11 C C11 XMA . . . D 4 7.573 26.091 12.048 1 30.82 ? C11 XMA 401 A 1 HETATM 12 S S12 XMA . . . D 4 9.12 23.426 5.81 1 22.96 ? S12 XMA 401 A 1 HETATM 13 O O13 XMA . . . D 4 9.193 24.764 5.019 1 18.92 ? O13 XMA 401 A 1 HETATM 14 O O14 XMA . . . D 4 10.368 22.556 5.571 1 21.92 ? O14 XMA 401 A 1 HETATM 15 C C15 XMA . . . D 4 5.3 22.327 4.361 1 30.66 ? C15 XMA 401 A 1 HETATM 16 O O16 XMA . . . D 4 4.254 22.834 3.963 1 34.61 ? O16 XMA 401 A 1 HETATM 17 C C17 XMA . . . D 4 6.475 23.271 4.804 1 28.01 ? C17 XMA 401 A 1 HETATM 18 N N18 XMA . . . D 4 7.735 22.631 5.272 1 25.04 ? N18 XMA 401 A 1 HETATM 19 C C19 XMA . . . D 4 6.819 20.292 4.965 1 33.85 ? C19 XMA 401 A 1 HETATM 20 C C20 XMA . . . D 4 7.864 19.816 3.874 1 39.14 ? C20 XMA 401 A 1 HETATM 21 O O21 XMA . . . D 4 7.347 18.852 2.915 1 48.48 ? O21 XMA 401 A 1 HETATM 22 C C22 XMA . . . D 4 8.22 17.899 2.47 1 46.93 ? C22 XMA 401 A 1 HETATM 23 C C23 XMA . . . D 4 7.586 21.31 5.916 1 28.86 ? C23 XMA 401 A 1 HETATM 24 N N24 XMA . . . D 4 5.539 20.911 4.467 1 31.56 ? N24 XMA 401 A 1 HETATM 25 C C25 XMA . . . D 4 4.475 19.897 4.609 1 33.28 ? C25 XMA 401 A 1 HETATM 26 C C26 XMA . . . D 4 0.222 15.076 8.637 1 50.52 ? C26 XMA 401 A 1 HETATM 27 N N27 XMA . . . D 4 2.477 17.858 7.102 1 45.01 ? N27 XMA 401 A 1 HETATM 28 C C28 XMA . . . D 4 1.531 17.124 8.006 1 46.63 ? C28 XMA 401 A 1 HETATM 29 C C29 XMA . . . D 4 1.131 15.722 7.744 1 47.97 ? C29 XMA 401 A 1 HETATM 30 C C30 XMA . . . D 4 2.885 19.326 7.388 1 41.76 ? C30 XMA 401 A 1 HETATM 31 C C31 XMA . . . D 4 0.944 17.763 9.209 1 48.07 ? C31 XMA 401 A 1 HETATM 32 C C32 XMA . . . D 4 3.084 17.181 5.841 1 43.07 ? C32 XMA 401 A 1 HETATM 33 C C33 XMA . . . D 4 4.977 19.019 5.803 1 37.4 ? C33 XMA 401 A 1 HETATM 34 O O34 XMA . . . D 4 6.428 19.157 5.733 1 38.1 ? O34 XMA 401 A 1 HETATM 35 C C35 XMA . . . D 4 4.423 19.52 7.211 1 38.3 ? C35 XMA 401 A 1 HETATM 36 N N36 XMA . . . D 4 -0.309 15.703 9.753 1 51.74 ? N36 XMA 401 A 1 HETATM 37 C C37 XMA . . . D 4 0.042 17.013 10.033 1 50.99 ? C37 XMA 401 A 1 HETATM 38 C C38 XMA . . . D 4 4.616 17.485 5.699 1 38.28 ? C38 XMA 401 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 38 #