data_1IOP # _model_server_result.job_id gGcd9vdqx6dPKgsmVn0DFg _model_server_result.datetime_utc '2025-03-01 15:17:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1iop # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":154}' # _entry.id 1IOP # _exptl.entry_id 1IOP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 536.36 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6,7-DICARBOXYL-1,2,3,4,5,8-HEXAMETHYLHEMIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1IOP _cell.length_a 91.02 _cell.length_b 91.02 _cell.length_c 45.68 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IOP _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 D FE HE6 . A HE6 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc2 D FE HE6 . A HE6 154 1_555 B C CYN . A CYN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.886 ? metalc ? metalc3 D FE HE6 . A HE6 154 1_555 B N CYN . A CYN 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.11 ? # _chem_comp.formula 'C28 H24 Fe N4 O4' _chem_comp.formula_weight 536.36 _chem_comp.id HE6 _chem_comp.mon_nstd_flag . _chem_comp.name 6,7-DICARBOXYL-1,2,3,4,5,8-HEXAMETHYLHEMIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HE6 sing 117 n n FE NB HE6 sing 118 n n FE NC HE6 sing 119 n n FE ND HE6 sing 120 n n NA C1A HE6 sing 121 n n NA C4A HE6 sing 122 n n NB C1B HE6 sing 123 n n NB C4B HE6 doub 124 n n NC C1C HE6 sing 125 n y NC C4C HE6 sing 126 n y ND C4D HE6 sing 127 n n ND C1D HE6 doub 128 n n C1A CHA HE6 doub 129 n n C1A C2A HE6 sing 130 n n CHA C4B HE6 sing 131 n n CHA HHA HE6 sing 132 n n C4D CHC HE6 doub 133 n n C4D C3D HE6 sing 134 n n C1B CHB HE6 doub 135 n n C1B C2B HE6 sing 136 n n CHB C4C HE6 sing 137 n n CHB HHB HE6 sing 138 n n C4A CHD HE6 doub 139 n n C4A C3A HE6 sing 140 n n C1C CHC HE6 sing 141 n n C1C C2C HE6 doub 142 n y CHC HHC HE6 sing 143 n n C4B C3B HE6 sing 144 n n C1D CHD HE6 sing 145 n n C1D C2D HE6 sing 146 n n CHD HHD HE6 sing 147 n n C4C C3C HE6 doub 148 n y C2A CMA HE6 sing 149 n n C2A C3A HE6 doub 150 n n CMA HMA1 HE6 sing 151 n n CMA HMA2 HE6 sing 152 n n CMA HMA3 HE6 sing 153 n n C3A CAA HE6 sing 154 n n CAA O1A HE6 doub 155 n n CAA O2A HE6 sing 156 n n O2A H2A HE6 sing 157 n n C2B CMB HE6 sing 158 n n C2B C3B HE6 doub 159 n n CMB HMB1 HE6 sing 160 n n CMB HMB2 HE6 sing 161 n n CMB HMB3 HE6 sing 162 n n C3B CNB HE6 sing 163 n n CNB HNB1 HE6 sing 164 n n CNB HNB2 HE6 sing 165 n n CNB HNB3 HE6 sing 166 n n C2C CMC HE6 sing 167 n n C2C C3C HE6 sing 168 n y CMC HMC1 HE6 sing 169 n n CMC HMC2 HE6 sing 170 n n CMC HMC3 HE6 sing 171 n n C3C CNC HE6 sing 172 n n CNC HNC1 HE6 sing 173 n n CNC HNC2 HE6 sing 174 n n CNC HNC3 HE6 sing 175 n n C2D C3D HE6 doub 176 n n C2D CAD HE6 sing 177 n n CMD C3D HE6 sing 178 n n CMD HMD1 HE6 sing 179 n n CMD HMD2 HE6 sing 180 n n CMD HMD3 HE6 sing 181 n n CAD O1D HE6 doub 182 n n CAD O2D HE6 sing 183 n n O2D H2D HE6 sing 184 n n # _atom_sites.entry_id 1IOP _atom_sites.fract_transf_matrix[1][1] 0.010987 _atom_sites.fract_transf_matrix[1][2] 0.006343 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012686 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021891 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CYN A 1 155 155 CYN CYN . C 3 SO4 A 1 300 300 SO4 SO4 . D 4 HE6 A 1 154 154 HE6 HE6 . E 5 HOH A 1 156 156 HOH HOH . E 5 HOH A 2 157 157 HOH HOH . E 5 HOH A 3 158 158 HOH HOH . E 5 HOH A 4 159 159 HOH HOH . E 5 HOH A 5 160 160 HOH HOH . E 5 HOH A 6 161 161 HOH HOH . E 5 HOH A 7 162 162 HOH HOH . E 5 HOH A 8 163 163 HOH HOH . E 5 HOH A 9 164 164 HOH HOH . E 5 HOH A 10 165 165 HOH HOH . E 5 HOH A 11 166 166 HOH HOH . E 5 HOH A 12 167 167 HOH HOH . E 5 HOH A 13 168 168 HOH HOH . E 5 HOH A 14 169 169 HOH HOH . E 5 HOH A 15 170 170 HOH HOH . E 5 HOH A 16 171 171 HOH HOH . E 5 HOH A 17 172 172 HOH HOH . E 5 HOH A 18 173 173 HOH HOH . E 5 HOH A 19 174 174 HOH HOH . E 5 HOH A 20 175 175 HOH HOH . E 5 HOH A 21 176 176 HOH HOH . E 5 HOH A 22 177 177 HOH HOH . E 5 HOH A 23 178 178 HOH HOH . E 5 HOH A 24 179 179 HOH HOH . E 5 HOH A 25 180 180 HOH HOH . E 5 HOH A 26 181 181 HOH HOH . E 5 HOH A 27 182 182 HOH HOH . E 5 HOH A 28 183 183 HOH HOH . E 5 HOH A 29 184 184 HOH HOH . E 5 HOH A 30 185 185 HOH HOH . E 5 HOH A 31 186 186 HOH HOH . E 5 HOH A 32 187 187 HOH HOH . E 5 HOH A 33 188 188 HOH HOH . E 5 HOH A 34 189 189 HOH HOH . E 5 HOH A 35 190 190 HOH HOH . E 5 HOH A 36 191 191 HOH HOH . E 5 HOH A 37 192 192 HOH HOH . E 5 HOH A 38 193 193 HOH HOH . E 5 HOH A 39 194 194 HOH HOH . E 5 HOH A 40 195 195 HOH HOH . E 5 HOH A 41 196 196 HOH HOH . E 5 HOH A 42 197 197 HOH HOH . E 5 HOH A 43 198 198 HOH HOH . E 5 HOH A 44 199 199 HOH HOH . E 5 HOH A 45 200 200 HOH HOH . E 5 HOH A 46 201 201 HOH HOH . E 5 HOH A 47 202 202 HOH HOH . E 5 HOH A 48 203 203 HOH HOH . E 5 HOH A 49 204 204 HOH HOH . E 5 HOH A 50 205 205 HOH HOH . E 5 HOH A 51 206 206 HOH HOH . E 5 HOH A 52 207 207 HOH HOH . E 5 HOH A 53 208 208 HOH HOH . E 5 HOH A 54 209 209 HOH HOH . E 5 HOH A 55 210 210 HOH HOH . E 5 HOH A 56 211 211 HOH HOH . E 5 HOH A 57 212 212 HOH HOH . E 5 HOH A 58 213 213 HOH HOH . E 5 HOH A 59 214 214 HOH HOH . E 5 HOH A 60 215 215 HOH HOH . E 5 HOH A 61 216 216 HOH HOH . E 5 HOH A 62 217 217 HOH HOH . E 5 HOH A 63 218 218 HOH HOH . E 5 HOH A 64 219 219 HOH HOH . E 5 HOH A 65 220 220 HOH HOH . E 5 HOH A 66 221 221 HOH HOH . E 5 HOH A 67 222 222 HOH HOH . E 5 HOH A 68 223 223 HOH HOH . E 5 HOH A 69 224 224 HOH HOH . E 5 HOH A 70 225 225 HOH HOH . E 5 HOH A 71 226 226 HOH HOH . E 5 HOH A 72 227 227 HOH HOH . E 5 HOH A 73 228 228 HOH HOH . E 5 HOH A 74 229 229 HOH HOH . E 5 HOH A 75 230 230 HOH HOH . E 5 HOH A 76 231 231 HOH HOH . E 5 HOH A 77 232 232 HOH HOH . E 5 HOH A 78 233 233 HOH HOH . E 5 HOH A 79 234 234 HOH HOH . E 5 HOH A 80 235 235 HOH HOH . E 5 HOH A 81 236 236 HOH HOH . E 5 HOH A 82 237 237 HOH HOH . E 5 HOH A 83 238 238 HOH HOH . E 5 HOH A 84 239 239 HOH HOH . E 5 HOH A 85 240 240 HOH HOH . E 5 HOH A 86 241 241 HOH HOH . E 5 HOH A 87 242 242 HOH HOH . E 5 HOH A 88 243 243 HOH HOH . E 5 HOH A 89 244 244 HOH HOH . E 5 HOH A 90 245 245 HOH HOH . E 5 HOH A 91 246 246 HOH HOH . E 5 HOH A 92 247 247 HOH HOH . E 5 HOH A 93 248 248 HOH HOH . E 5 HOH A 94 249 249 HOH HOH . E 5 HOH A 95 250 250 HOH HOH . E 5 HOH A 96 251 251 HOH HOH . E 5 HOH A 97 252 252 HOH HOH . E 5 HOH A 98 253 253 HOH HOH . E 5 HOH A 99 254 254 HOH HOH . E 5 HOH A 100 255 255 HOH HOH . E 5 HOH A 101 256 256 HOH HOH . E 5 HOH A 102 257 257 HOH HOH . E 5 HOH A 103 258 258 HOH HOH . E 5 HOH A 104 259 259 HOH HOH . E 5 HOH A 105 260 260 HOH HOH . E 5 HOH A 106 261 261 HOH HOH . E 5 HOH A 107 262 262 HOH HOH . E 5 HOH A 108 263 263 HOH HOH . E 5 HOH A 109 264 264 HOH HOH . E 5 HOH A 110 265 265 HOH HOH . E 5 HOH A 111 266 266 HOH HOH . E 5 HOH A 112 267 267 HOH HOH . E 5 HOH A 113 268 268 HOH HOH . E 5 HOH A 114 269 269 HOH HOH . E 5 HOH A 115 270 270 HOH HOH . E 5 HOH A 116 271 271 HOH HOH . E 5 HOH A 117 272 272 HOH HOH . E 5 HOH A 118 273 273 HOH HOH . E 5 HOH A 119 274 274 HOH HOH . E 5 HOH A 120 275 275 HOH HOH . E 5 HOH A 121 276 276 HOH HOH . E 5 HOH A 122 277 277 HOH HOH . E 5 HOH A 123 278 278 HOH HOH . E 5 HOH A 124 279 279 HOH HOH . E 5 HOH A 125 280 280 HOH HOH . E 5 HOH A 126 281 281 HOH HOH . E 5 HOH A 127 282 282 HOH HOH . E 5 HOH A 128 283 283 HOH HOH . E 5 HOH A 129 284 284 HOH HOH . E 5 HOH A 130 285 285 HOH HOH . E 5 HOH A 131 286 286 HOH HOH . E 5 HOH A 132 287 287 HOH HOH . E 5 HOH A 133 288 288 HOH HOH . E 5 HOH A 134 289 289 HOH HOH . E 5 HOH A 135 290 290 HOH HOH . E 5 HOH A 136 291 291 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HE6 . . . D 4 24.907 24.797 6.074 1 15.59 ? FE HE6 154 A 1 HETATM 2 N NA HE6 . . . D 4 25.898 26.398 6.57 1 14.57 ? NA HE6 154 A 1 HETATM 3 N NB HE6 . . . D 4 25.704 23.898 7.59 1 12.73 ? NB HE6 154 A 1 HETATM 4 N NC HE6 . . . D 4 23.981 23.145 5.488 1 13.81 ? NC HE6 154 A 1 HETATM 5 N ND HE6 . . . D 4 24.192 25.688 4.453 1 15.76 ? ND HE6 154 A 1 HETATM 6 C C1A HE6 . . . D 4 26.688 26.631 7.678 1 14.26 ? C1A HE6 154 A 1 HETATM 7 C CHA HE6 . . . D 4 26.931 25.714 8.656 1 12.79 ? CHA HE6 154 A 1 HETATM 8 C C4D HE6 . . . D 4 23.334 25.184 3.496 1 15.88 ? C4D HE6 154 A 1 HETATM 9 C C1B HE6 . . . D 4 25.534 22.569 7.948 1 12.56 ? C1B HE6 154 A 1 HETATM 10 C CHB HE6 . . . D 4 24.876 21.614 7.193 1 12.71 ? CHB HE6 154 A 1 HETATM 11 C C4A HE6 . . . D 4 25.947 27.585 5.847 1 15.81 ? C4A HE6 154 A 1 HETATM 12 C C1C HE6 . . . D 4 23.28 22.914 4.325 1 13.33 ? C1C HE6 154 A 1 HETATM 13 C CHC HE6 . . . D 4 22.91 23.874 3.424 1 13.81 ? CHC HE6 154 A 1 HETATM 14 C C4B HE6 . . . D 4 26.449 24.443 8.606 1 12.18 ? C4B HE6 154 A 1 HETATM 15 C C1D HE6 . . . D 4 24.415 26.989 4.033 1 15.35 ? C1D HE6 154 A 1 HETATM 16 C CHD HE6 . . . D 4 25.254 27.854 4.694 1 14.88 ? CHD HE6 154 A 1 HETATM 17 C C4C HE6 . . . D 4 24.137 21.889 6.046 1 13.17 ? C4C HE6 154 A 1 HETATM 18 C C2A HE6 . . . D 4 27.221 27.877 7.61 1 15.4 ? C2A HE6 154 A 1 HETATM 19 C CMA HE6 . . . D 4 28.01 28.555 8.708 1 14.12 ? CMA HE6 154 A 1 HETATM 20 C C3A HE6 . . . D 4 26.765 28.474 6.471 1 16.93 ? C3A HE6 154 A 1 HETATM 21 C CAA HE6 . . . D 4 27.043 29.92 6.029 1 19.12 ? CAA HE6 154 A 1 HETATM 22 O O1A HE6 . . . D 4 26.742 30.772 6.888 1 22.26 ? O1A HE6 154 A 1 HETATM 23 O O2A HE6 . . . D 4 27.064 30.195 4.811 1 21.9 ? O2A HE6 154 A 1 HETATM 24 C C2B HE6 . . . D 4 26.18 22.35 9.112 1 13.17 ? C2B HE6 154 A 1 HETATM 25 C CMB HE6 . . . D 4 26.425 21.011 9.781 1 12.85 ? CMB HE6 154 A 1 HETATM 26 C C3B HE6 . . . D 4 26.727 23.511 9.524 1 12.52 ? C3B HE6 154 A 1 HETATM 27 C CNB HE6 . . . D 4 27.619 23.678 10.747 1 14.11 ? CNB HE6 154 A 1 HETATM 28 C C2C HE6 . . . D 4 23.083 21.587 4.151 1 14.35 ? C2C HE6 154 A 1 HETATM 29 C CMC HE6 . . . D 4 22.471 20.903 2.916 1 13.62 ? CMC HE6 154 A 1 HETATM 30 C C3C HE6 . . . D 4 23.559 20.978 5.247 1 13.15 ? C3C HE6 154 A 1 HETATM 31 C CNC HE6 . . . D 4 23.392 19.513 5.566 1 13.48 ? CNC HE6 154 A 1 HETATM 32 C C2D HE6 . . . D 4 23.774 27.231 2.878 1 16.03 ? C2D HE6 154 A 1 HETATM 33 C CMD HE6 . . . D 4 22.01 25.954 1.484 1 15.65 ? CMD HE6 154 A 1 HETATM 34 C C3D HE6 . . . D 4 23.06 26.127 2.579 1 15.17 ? C3D HE6 154 A 1 HETATM 35 C CAD HE6 . . . D 4 23.744 28.546 2.091 1 18.62 ? CAD HE6 154 A 1 HETATM 36 O O1D HE6 . . . D 4 24.329 29.517 2.591 1 23.38 ? O1D HE6 154 A 1 HETATM 37 O O2D HE6 . . . D 4 23.56 28.498 0.864 1 22.57 ? O2D HE6 154 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 37 #