data_1IPB # _model_server_result.job_id iiBLRFbMR39ZyZ-kBPhtTg _model_server_result.datetime_utc '2024-11-19 14:39:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ipb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1000}' # _entry.id 1IPB # _exptl.entry_id 1IPB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 787.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1IPB _cell.length_a 89.26 _cell.length_b 89.26 _cell.length_c 38.51 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IPB _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N10 O17 P3 1' _chem_comp.formula_weight 787.441 _chem_comp.id GTA _chem_comp.mon_nstd_flag . _chem_comp.name "P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 7-METHYL-GPPPA # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C2 GTA sing 129 n n N2 HN21 GTA sing 130 n n N2 HN22 GTA sing 131 n n O6 C6 GTA doub 132 n n C6 C5 GTA sing 133 n n C6 N1 GTA sing 134 n n C5 N7 GTA sing 135 n y C5 C4 GTA doub 136 n y N7 C7 GTA sing 137 n n N7 C8 GTA doub 138 n y C7 H71 GTA sing 139 n n C7 H72 GTA sing 140 n n C7 H73 GTA sing 141 n n C8 N9 GTA sing 142 n y C8 H8 GTA sing 143 n n N9 C4 GTA sing 144 n y N9 C1A GTA sing 145 n n C4 N3 GTA sing 146 n n N3 C2 GTA doub 147 n n C2 N1 GTA sing 148 n n N1 HN1 GTA sing 149 n n O3A C3A GTA sing 150 n n O3A HO3A GTA sing 151 n n C1A C2A GTA sing 152 n n C1A O4A GTA sing 153 n n C1A H1A GTA sing 154 n n C2A C3A GTA sing 155 n n C2A O2A GTA sing 156 n n C2A H2A GTA sing 157 n n C3A C4A GTA sing 158 n n C3A H3A GTA sing 159 n n C4A C5A GTA sing 160 n n C4A O4A GTA sing 161 n n C4A H4A GTA sing 162 n n C5A O15 GTA sing 163 n n C5A H5A1 GTA sing 164 n n C5A H5A2 GTA sing 165 n n O2A HO2A GTA sing 166 n n P1 O11 GTA doub 167 n n P1 O12 GTA sing 168 n n P1 O13 GTA sing 169 n n P1 O15 GTA sing 170 n n O12 H122 GTA sing 171 n n O13 P2 GTA sing 172 n n P2 O22 GTA sing 173 n n P2 O21 GTA doub 174 n n P2 O23 GTA sing 175 n n O22 H222 GTA sing 176 n n O23 P3 GTA sing 177 n n P3 O32 GTA sing 178 n n P3 O31 GTA doub 179 n n P3 O33 GTA sing 180 n n O32 H322 GTA sing 181 n n O33 C5B GTA sing 182 n n C5B C4B GTA sing 183 n n C5B H5B1 GTA sing 184 n n C5B H5B2 GTA sing 185 n n C4B O4B GTA sing 186 n n C4B C3B GTA sing 187 n n C4B H4B GTA sing 188 n n O4B C1B GTA sing 189 n n C3B O3B GTA sing 190 n n C3B C2B GTA sing 191 n n C3B H3B GTA sing 192 n n O3B HO3B GTA sing 193 n n C2B O2B GTA sing 194 n n C2B C1B GTA sing 195 n n C2B H2B GTA sing 196 n n O2B HO2B GTA sing 197 n n C1B N9C GTA sing 198 n n C1B H1B GTA sing 199 n n N9C C8C GTA sing 200 n y N9C C4C GTA sing 201 n y C8C N7C GTA doub 202 n y C8C H8C GTA sing 203 n n N7C C5C GTA sing 204 n y C5C C6C GTA doub 205 n y C5C C4C GTA sing 206 n y C6C N6C GTA sing 207 n n C6C N1C GTA sing 208 n y N6C HN61 GTA sing 209 n n N6C HN62 GTA sing 210 n n N1C C2C GTA doub 211 n y C2C N3C GTA sing 212 n y C2C H2C GTA sing 213 n n N3C C4C GTA doub 214 n y # _atom_sites.entry_id 1IPB _atom_sites.fract_transf_matrix[1][1] 0.011203 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011203 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025967 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GTA A 1 1000 1000 GTA GTA . C 3 HOH A 1 1001 1 HOH TIP . C 3 HOH A 2 1002 2 HOH TIP . C 3 HOH A 3 1003 3 HOH TIP . C 3 HOH A 4 1004 4 HOH TIP . C 3 HOH A 5 1005 5 HOH TIP . C 3 HOH A 6 1006 6 HOH TIP . C 3 HOH A 7 1007 7 HOH TIP . C 3 HOH A 8 1008 8 HOH TIP . C 3 HOH A 9 1009 9 HOH TIP . C 3 HOH A 10 1010 10 HOH TIP . C 3 HOH A 11 1011 11 HOH TIP . C 3 HOH A 12 1012 12 HOH TIP . C 3 HOH A 13 1013 13 HOH TIP . C 3 HOH A 14 1014 14 HOH TIP . C 3 HOH A 15 1015 15 HOH TIP . C 3 HOH A 16 1016 16 HOH TIP . C 3 HOH A 17 1017 17 HOH TIP . C 3 HOH A 18 1018 18 HOH TIP . C 3 HOH A 19 1019 19 HOH TIP . C 3 HOH A 20 1020 20 HOH TIP . C 3 HOH A 21 1021 21 HOH TIP . C 3 HOH A 22 1022 22 HOH TIP . C 3 HOH A 23 1023 23 HOH TIP . C 3 HOH A 24 1024 24 HOH TIP . C 3 HOH A 25 1025 25 HOH TIP . C 3 HOH A 26 1026 26 HOH TIP . C 3 HOH A 27 1027 27 HOH TIP . C 3 HOH A 28 1028 28 HOH TIP . C 3 HOH A 29 1029 29 HOH TIP . C 3 HOH A 30 1030 30 HOH TIP . C 3 HOH A 31 1031 31 HOH TIP . C 3 HOH A 32 1032 32 HOH TIP . C 3 HOH A 33 1033 33 HOH TIP . C 3 HOH A 34 1034 34 HOH TIP . C 3 HOH A 35 1035 35 HOH TIP . C 3 HOH A 36 1036 36 HOH TIP . C 3 HOH A 37 1037 37 HOH TIP . C 3 HOH A 38 1038 38 HOH TIP . C 3 HOH A 39 1039 39 HOH TIP . C 3 HOH A 40 1040 40 HOH TIP . C 3 HOH A 41 1041 41 HOH TIP . C 3 HOH A 42 1042 42 HOH TIP . C 3 HOH A 43 1043 43 HOH TIP . C 3 HOH A 44 1044 44 HOH TIP . C 3 HOH A 45 1045 45 HOH TIP . C 3 HOH A 46 1046 46 HOH TIP . C 3 HOH A 47 1047 47 HOH TIP . C 3 HOH A 48 1048 48 HOH TIP . C 3 HOH A 49 1049 49 HOH TIP . C 3 HOH A 50 1050 50 HOH TIP . C 3 HOH A 51 1051 51 HOH TIP . C 3 HOH A 52 1052 52 HOH TIP . C 3 HOH A 53 1053 53 HOH TIP . C 3 HOH A 54 1054 54 HOH TIP . C 3 HOH A 55 1055 55 HOH TIP . C 3 HOH A 56 1056 56 HOH TIP . C 3 HOH A 57 1057 57 HOH TIP . C 3 HOH A 58 1058 58 HOH TIP . C 3 HOH A 59 1059 59 HOH TIP . C 3 HOH A 60 1060 60 HOH TIP . C 3 HOH A 61 1061 61 HOH TIP . C 3 HOH A 62 1062 62 HOH TIP . C 3 HOH A 63 1063 63 HOH TIP . C 3 HOH A 64 1064 64 HOH TIP . C 3 HOH A 65 1065 65 HOH TIP . C 3 HOH A 66 1066 66 HOH TIP . C 3 HOH A 67 1067 67 HOH TIP . C 3 HOH A 68 1068 68 HOH TIP . C 3 HOH A 69 1069 69 HOH TIP . C 3 HOH A 70 1070 70 HOH TIP . C 3 HOH A 71 1071 71 HOH TIP . C 3 HOH A 72 1072 72 HOH TIP . C 3 HOH A 73 1073 73 HOH TIP . C 3 HOH A 74 1074 74 HOH TIP . C 3 HOH A 75 1075 75 HOH TIP . C 3 HOH A 76 1076 76 HOH TIP . C 3 HOH A 77 1077 77 HOH TIP . C 3 HOH A 78 1078 78 HOH TIP . C 3 HOH A 79 1079 79 HOH TIP . C 3 HOH A 80 1080 80 HOH TIP . C 3 HOH A 81 1081 81 HOH TIP . C 3 HOH A 82 1082 82 HOH TIP . C 3 HOH A 83 1083 83 HOH TIP . C 3 HOH A 84 1084 84 HOH TIP . C 3 HOH A 85 1085 85 HOH TIP . C 3 HOH A 86 1086 86 HOH TIP . C 3 HOH A 87 1087 87 HOH TIP . C 3 HOH A 88 1088 88 HOH TIP . C 3 HOH A 89 1089 89 HOH TIP . C 3 HOH A 90 1090 90 HOH TIP . C 3 HOH A 91 1091 91 HOH TIP . C 3 HOH A 92 1092 92 HOH TIP . C 3 HOH A 93 1093 93 HOH TIP . C 3 HOH A 94 1094 94 HOH TIP . C 3 HOH A 95 1095 95 HOH TIP . C 3 HOH A 96 1096 96 HOH TIP . C 3 HOH A 97 1097 97 HOH TIP . C 3 HOH A 98 1098 98 HOH TIP . C 3 HOH A 99 1099 99 HOH TIP . C 3 HOH A 100 1100 100 HOH TIP . C 3 HOH A 101 1101 101 HOH TIP . C 3 HOH A 102 1102 102 HOH TIP . C 3 HOH A 103 1103 103 HOH TIP . C 3 HOH A 104 1104 104 HOH TIP . C 3 HOH A 105 1105 105 HOH TIP . C 3 HOH A 106 1106 106 HOH TIP . C 3 HOH A 107 1107 107 HOH TIP . C 3 HOH A 108 1108 108 HOH TIP . C 3 HOH A 109 1109 109 HOH TIP . C 3 HOH A 110 1110 111 HOH TIP . C 3 HOH A 111 1111 112 HOH TIP . C 3 HOH A 112 1112 113 HOH TIP . C 3 HOH A 113 1113 114 HOH TIP . C 3 HOH A 114 1114 115 HOH TIP . C 3 HOH A 115 1115 116 HOH TIP . C 3 HOH A 116 1116 117 HOH TIP . C 3 HOH A 117 1117 118 HOH TIP . C 3 HOH A 118 1118 119 HOH TIP . C 3 HOH A 119 1119 120 HOH TIP . C 3 HOH A 120 1120 121 HOH TIP . C 3 HOH A 121 1121 122 HOH TIP . C 3 HOH A 122 1122 123 HOH TIP . C 3 HOH A 123 1123 124 HOH TIP . C 3 HOH A 124 1124 125 HOH TIP . C 3 HOH A 125 1125 126 HOH TIP . C 3 HOH A 126 1126 127 HOH TIP . C 3 HOH A 127 1127 128 HOH TIP . C 3 HOH A 128 1128 129 HOH TIP . C 3 HOH A 129 1129 130 HOH TIP . C 3 HOH A 130 1130 131 HOH TIP . C 3 HOH A 131 1131 132 HOH TIP . C 3 HOH A 132 1132 133 HOH TIP . C 3 HOH A 133 1133 134 HOH TIP . C 3 HOH A 134 1134 135 HOH TIP . C 3 HOH A 135 1135 136 HOH TIP . C 3 HOH A 136 1136 137 HOH TIP . C 3 HOH A 137 1137 138 HOH TIP . C 3 HOH A 138 1138 139 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2 GTA . . . B 2 13.322 -72.566 30.249 1 16.37 ? N2 GTA 1000 A 1 HETATM 2 O O6 GTA . . . B 2 8.888 -70.776 29.82 1 16.4 ? O6 GTA 1000 A 1 HETATM 3 C C6 GTA . . . B 2 9.936 -71.099 29.254 1 14.37 ? C6 GTA 1000 A 1 HETATM 4 C C5 GTA . . . B 2 10.171 -70.958 27.705 1 15.19 ? C5 GTA 1000 A 1 HETATM 5 N N7 GTA . . . B 2 9.313 -70.472 26.711 1 16.16 ? N7 GTA 1000 A 1 HETATM 6 C C7 GTA . . . B 2 7.935 -69.94 26.75 1 19.93 ? C7 GTA 1000 A 1 HETATM 7 C C8 GTA . . . B 2 10.186 -70.654 25.631 1 15.64 ? C8 GTA 1000 A 1 HETATM 8 N N9 GTA . . . B 2 11.522 -71.208 25.823 1 16.71 ? N9 GTA 1000 A 1 HETATM 9 C C4 GTA . . . B 2 11.481 -71.393 27.182 1 13.6 ? C4 GTA 1000 A 1 HETATM 10 N N3 GTA . . . B 2 12.483 -71.926 28.123 1 15 ? N3 GTA 1000 A 1 HETATM 11 C C2 GTA . . . B 2 12.3 -72.05 29.435 1 13.77 ? C2 GTA 1000 A 1 HETATM 12 N N1 GTA . . . B 2 10.997 -71.628 30.01 1 13.9 ? N1 GTA 1000 A 1 HETATM 13 O O3A GTA . . . B 2 12.469 -74.317 22.603 1 16.02 ? O3A GTA 1000 A 1 HETATM 14 C C1A GTA . . . B 2 12.576 -71.497 24.924 1 16.54 ? C1A GTA 1000 A 1 HETATM 15 C C2A GTA . . . B 2 12.797 -72.994 24.624 1 17.78 ? C2A GTA 1000 A 1 HETATM 16 C C3A GTA . . . B 2 12.079 -73.143 23.317 1 16.86 ? C3A GTA 1000 A 1 HETATM 17 C C4A GTA . . . B 2 12.349 -71.781 22.616 1 16.9 ? C4A GTA 1000 A 1 HETATM 18 C C5A GTA . . . B 2 11.567 -71.149 21.414 1 16.81 ? C5A GTA 1000 A 1 HETATM 19 O O4A GTA . . . B 2 12.323 -70.812 23.664 1 17.9 ? O4A GTA 1000 A 1 HETATM 20 O O2A GTA . . . B 2 14.207 -73.212 24.475 1 15.4 ? O2A GTA 1000 A 1 HETATM 21 P P1 GTA . . . B 2 9.097 -69.969 21.613 1 23.6 ? P1 GTA 1000 A 1 HETATM 22 O O11 GTA . . . B 2 7.77 -70.209 22.388 1 24.37 ? O11 GTA 1000 A 1 HETATM 23 O O12 GTA . . . B 2 9.593 -68.48 21.751 1 26.17 ? O12 GTA 1000 A 1 HETATM 24 O O13 GTA . . . B 2 8.595 -70.54 20.423 1 26.58 ? O13 GTA 1000 A 1 HETATM 25 O O15 GTA . . . B 2 10.194 -71.122 21.975 1 21.21 ? O15 GTA 1000 A 1 HETATM 26 P P2 GTA . . . B 2 9.222 -70.159 18.897 1 29.58 ? P2 GTA 1000 A 1 HETATM 27 O O22 GTA . . . B 2 10.388 -69.125 18.959 1 29.22 ? O22 GTA 1000 A 1 HETATM 28 O O21 GTA . . . B 2 8.126 -69.587 17.99 1 29.94 ? O21 GTA 1000 A 1 HETATM 29 O O23 GTA . . . B 2 9.581 -71.031 18.01 1 35.29 ? O23 GTA 1000 A 1 HETATM 30 P P3 GTA . . . B 2 9.563 -72.581 18.036 1 40.97 ? P3 GTA 1000 A 1 HETATM 31 O O32 GTA . . . B 2 10.061 -73.023 16.762 1 38.68 ? O32 GTA 1000 A 1 HETATM 32 O O31 GTA . . . B 2 8.137 -73.138 18.223 1 38.84 ? O31 GTA 1000 A 1 HETATM 33 O O33 GTA . . . B 2 10.213 -73.704 19.015 1 43.21 ? O33 GTA 1000 A 1 HETATM 34 C C5B GTA . . . B 2 9.708 -74.484 20.349 1 46.02 ? C5B GTA 1000 A 1 HETATM 35 C C4B GTA . . . B 2 9.456 -75.778 20.087 1 48.38 ? C4B GTA 1000 A 1 HETATM 36 O O4B GTA . . . B 2 10.593 -76.592 19.564 1 48.7 ? O4B GTA 1000 A 1 HETATM 37 C C3B GTA . . . B 2 8.965 -76.685 21.234 1 49.47 ? C3B GTA 1000 A 1 HETATM 38 O O3B GTA . . . B 2 7.616 -76.365 21.722 1 50.3 ? O3B GTA 1000 A 1 HETATM 39 C C2B GTA . . . B 2 9.1 -78.107 20.69 1 50.02 ? C2B GTA 1000 A 1 HETATM 40 O O2B GTA . . . B 2 7.891 -78.533 19.937 1 50.31 ? O2B GTA 1000 A 1 HETATM 41 C C1B GTA . . . B 2 10.421 -78.017 19.904 1 49.22 ? C1B GTA 1000 A 1 HETATM 42 N N9C GTA . . . B 2 11.732 -78.387 20.675 1 49.13 ? N9C GTA 1000 A 1 HETATM 43 C C8C GTA . . . B 2 12.683 -77.691 21.425 1 49.04 ? C8C GTA 1000 A 1 HETATM 44 N N7C GTA . . . B 2 13.613 -78.521 21.865 1 47.37 ? N7C GTA 1000 A 1 HETATM 45 C C5C GTA . . . B 2 13.368 -79.912 21.436 1 48.25 ? C5C GTA 1000 A 1 HETATM 46 C C6C GTA . . . B 2 13.92 -81.153 21.554 1 48.44 ? C6C GTA 1000 A 1 HETATM 47 N N6C GTA . . . B 2 14.999 -81.413 22.206 1 48.51 ? N6C GTA 1000 A 1 HETATM 48 N N1C GTA . . . B 2 13.174 -82.211 20.864 1 48.71 ? N1C GTA 1000 A 1 HETATM 49 C C2C GTA . . . B 2 11.957 -82.062 20.102 1 48.89 ? C2C GTA 1000 A 1 HETATM 50 N N3C GTA . . . B 2 11.393 -80.799 19.983 1 48.74 ? N3C GTA 1000 A 1 HETATM 51 C C4C GTA . . . B 2 12.107 -79.701 20.66 1 49.23 ? C4C GTA 1000 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 51 #