data_1IPC # _model_server_result.job_id 28rWYwhvuYMJ6FwfZwtIsw _model_server_result.datetime_utc '2024-11-19 12:24:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ipc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1000}' # _entry.id 1IPC # _exptl.entry_id 1IPC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 538.215 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1IPC _cell.length_a 88.19 _cell.length_b 88.19 _cell.length_c 38.28 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IPC _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H19 N5 O14 P3 1' _chem_comp.formula_weight 538.215 _chem_comp.id MGP _chem_comp.mon_nstd_flag . _chem_comp.name "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A MGP sing 237 n n PA O2A MGP doub 238 n n PA O3A MGP sing 239 n n PA O5' MGP sing 240 n n O3A PB MGP sing 241 n n O5' C5' MGP sing 242 n n PB O1B MGP sing 243 n n PB O2B MGP doub 244 n n PB O3B MGP sing 245 n n O3B PC MGP sing 246 n n PC O1C MGP sing 247 n n PC O2C MGP doub 248 n n PC O3C MGP sing 249 n n C5' C4' MGP sing 250 n n C5' H5' MGP sing 251 n n C5' "H5'A" MGP sing 252 n n C4' O4' MGP sing 253 n n C4' C3' MGP sing 254 n n C4' H4' MGP sing 255 n n O4' C1' MGP sing 256 n n C3' O3' MGP sing 257 n n C3' C2' MGP sing 258 n n C3' H3' MGP sing 259 n n O3' HO3' MGP sing 260 n n C2' O2' MGP sing 261 n n C2' C1' MGP sing 262 n n C2' H2' MGP sing 263 n n O2' HO2' MGP sing 264 n n C1' N9 MGP sing 265 n n C1' H1' MGP sing 266 n n N9 C8 MGP sing 267 n y N9 C4 MGP sing 268 n y C8 N7 MGP doub 269 n y C8 H8 MGP sing 270 n n N7 CM7 MGP sing 271 n n N7 C5 MGP sing 272 n y CM7 HM7 MGP sing 273 n n CM7 HM7A MGP sing 274 n n CM7 HM7B MGP sing 275 n n C5 C6 MGP sing 276 n n C5 C4 MGP doub 277 n y C6 O6 MGP doub 278 n n C6 N1 MGP sing 279 n n N1 C2 MGP sing 280 n n N1 HN1 MGP sing 281 n n C2 N2 MGP sing 282 n n C2 N3 MGP doub 283 n n N2 HN2 MGP sing 284 n n N2 HN2A MGP sing 285 n n N3 C4 MGP sing 286 n n O1A H16 MGP sing 287 n n O1B H17 MGP sing 288 n n O1C H18 MGP sing 289 n n O3C H19 MGP sing 290 n n # _atom_sites.entry_id 1IPC _atom_sites.fract_transf_matrix[1][1] 0.011339 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011339 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026123 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MGP A 1 1000 1000 MGP M7G . C 3 HOH A 1 1001 1 HOH TIP . C 3 HOH A 2 1002 2 HOH TIP . C 3 HOH A 3 1003 3 HOH TIP . C 3 HOH A 4 1004 4 HOH TIP . C 3 HOH A 5 1005 5 HOH TIP . C 3 HOH A 6 1006 6 HOH TIP . C 3 HOH A 7 1007 7 HOH TIP . C 3 HOH A 8 1008 8 HOH TIP . C 3 HOH A 9 1009 9 HOH TIP . C 3 HOH A 10 1010 10 HOH TIP . C 3 HOH A 11 1011 11 HOH TIP . C 3 HOH A 12 1012 12 HOH TIP . C 3 HOH A 13 1013 13 HOH TIP . C 3 HOH A 14 1014 14 HOH TIP . C 3 HOH A 15 1015 15 HOH TIP . C 3 HOH A 16 1016 16 HOH TIP . C 3 HOH A 17 1017 17 HOH TIP . C 3 HOH A 18 1018 18 HOH TIP . C 3 HOH A 19 1019 19 HOH TIP . C 3 HOH A 20 1020 20 HOH TIP . C 3 HOH A 21 1021 21 HOH TIP . C 3 HOH A 22 1022 22 HOH TIP . C 3 HOH A 23 1023 23 HOH TIP . C 3 HOH A 24 1024 24 HOH TIP . C 3 HOH A 25 1025 25 HOH TIP . C 3 HOH A 26 1026 26 HOH TIP . C 3 HOH A 27 1027 27 HOH TIP . C 3 HOH A 28 1028 28 HOH TIP . C 3 HOH A 29 1029 29 HOH TIP . C 3 HOH A 30 1030 30 HOH TIP . C 3 HOH A 31 1031 31 HOH TIP . C 3 HOH A 32 1032 32 HOH TIP . C 3 HOH A 33 1033 33 HOH TIP . C 3 HOH A 34 1034 34 HOH TIP . C 3 HOH A 35 1035 35 HOH TIP . C 3 HOH A 36 1036 36 HOH TIP . C 3 HOH A 37 1037 37 HOH TIP . C 3 HOH A 38 1038 38 HOH TIP . C 3 HOH A 39 1039 39 HOH TIP . C 3 HOH A 40 1040 40 HOH TIP . C 3 HOH A 41 1041 41 HOH TIP . C 3 HOH A 42 1042 42 HOH TIP . C 3 HOH A 43 1043 43 HOH TIP . C 3 HOH A 44 1044 44 HOH TIP . C 3 HOH A 45 1045 45 HOH TIP . C 3 HOH A 46 1046 46 HOH TIP . C 3 HOH A 47 1047 47 HOH TIP . C 3 HOH A 48 1048 48 HOH TIP . C 3 HOH A 49 1049 49 HOH TIP . C 3 HOH A 50 1050 50 HOH TIP . C 3 HOH A 51 1051 51 HOH TIP . C 3 HOH A 52 1052 52 HOH TIP . C 3 HOH A 53 1053 53 HOH TIP . C 3 HOH A 54 1054 54 HOH TIP . C 3 HOH A 55 1055 55 HOH TIP . C 3 HOH A 56 1056 56 HOH TIP . C 3 HOH A 57 1057 57 HOH TIP . C 3 HOH A 58 1058 58 HOH TIP . C 3 HOH A 59 1059 59 HOH TIP . C 3 HOH A 60 1060 60 HOH TIP . C 3 HOH A 61 1061 61 HOH TIP . C 3 HOH A 62 1062 62 HOH TIP . C 3 HOH A 63 1063 63 HOH TIP . C 3 HOH A 64 1064 64 HOH TIP . C 3 HOH A 65 1065 65 HOH TIP . C 3 HOH A 66 1066 66 HOH TIP . C 3 HOH A 67 1067 67 HOH TIP . C 3 HOH A 68 1068 68 HOH TIP . C 3 HOH A 69 1069 69 HOH TIP . C 3 HOH A 70 1070 70 HOH TIP . C 3 HOH A 71 1071 71 HOH TIP . C 3 HOH A 72 1072 72 HOH TIP . C 3 HOH A 73 1073 73 HOH TIP . C 3 HOH A 74 1074 74 HOH TIP . C 3 HOH A 75 1075 75 HOH TIP . C 3 HOH A 76 1076 76 HOH TIP . C 3 HOH A 77 1077 77 HOH TIP . C 3 HOH A 78 1078 78 HOH TIP . C 3 HOH A 79 1079 79 HOH TIP . C 3 HOH A 80 1080 80 HOH TIP . C 3 HOH A 81 1081 81 HOH TIP . C 3 HOH A 82 1082 82 HOH TIP . C 3 HOH A 83 1083 83 HOH TIP . C 3 HOH A 84 1084 84 HOH TIP . C 3 HOH A 85 1085 85 HOH TIP . C 3 HOH A 86 1086 86 HOH TIP . C 3 HOH A 87 1087 87 HOH TIP . C 3 HOH A 88 1088 88 HOH TIP . C 3 HOH A 89 1089 89 HOH TIP . C 3 HOH A 90 1090 90 HOH TIP . C 3 HOH A 91 1091 91 HOH TIP . C 3 HOH A 92 1092 92 HOH TIP . C 3 HOH A 93 1093 93 HOH TIP . C 3 HOH A 94 1094 94 HOH TIP . C 3 HOH A 95 1095 95 HOH TIP . C 3 HOH A 96 1096 96 HOH TIP . C 3 HOH A 97 1097 97 HOH TIP . C 3 HOH A 98 1098 98 HOH TIP . C 3 HOH A 99 1099 99 HOH TIP . C 3 HOH A 100 1100 100 HOH TIP . C 3 HOH A 101 1101 101 HOH TIP . C 3 HOH A 102 1102 102 HOH TIP . C 3 HOH A 103 1103 103 HOH TIP . C 3 HOH A 104 1104 104 HOH TIP . C 3 HOH A 105 1105 105 HOH TIP . C 3 HOH A 106 1106 106 HOH TIP . C 3 HOH A 107 1107 107 HOH TIP . C 3 HOH A 108 1108 108 HOH TIP . C 3 HOH A 109 1109 109 HOH TIP . C 3 HOH A 110 1110 110 HOH TIP . C 3 HOH A 111 1111 111 HOH TIP . C 3 HOH A 112 1112 112 HOH TIP . C 3 HOH A 113 1113 113 HOH TIP . C 3 HOH A 114 1114 114 HOH TIP . C 3 HOH A 115 1115 115 HOH TIP . C 3 HOH A 116 1116 116 HOH TIP . C 3 HOH A 117 1117 117 HOH TIP . C 3 HOH A 118 1118 118 HOH TIP . C 3 HOH A 119 1119 119 HOH TIP . C 3 HOH A 120 1120 120 HOH TIP . C 3 HOH A 121 1121 121 HOH TIP . C 3 HOH A 122 1122 122 HOH TIP . C 3 HOH A 123 1123 123 HOH TIP . C 3 HOH A 124 1124 124 HOH TIP . C 3 HOH A 125 1125 125 HOH TIP . C 3 HOH A 126 1126 126 HOH TIP . C 3 HOH A 127 1127 127 HOH TIP . C 3 HOH A 128 1128 128 HOH TIP . C 3 HOH A 129 1129 129 HOH TIP . C 3 HOH A 130 1130 130 HOH TIP . C 3 HOH A 131 1131 131 HOH TIP . C 3 HOH A 132 1132 132 HOH TIP . C 3 HOH A 133 1133 133 HOH TIP . C 3 HOH A 134 1134 134 HOH TIP . C 3 HOH A 135 1135 135 HOH TIP . C 3 HOH A 136 1136 136 HOH TIP . C 3 HOH A 137 1137 137 HOH TIP . C 3 HOH A 138 1138 138 HOH TIP . C 3 HOH A 139 1139 139 HOH TIP . C 3 HOH A 140 1140 140 HOH TIP . C 3 HOH A 141 1141 141 HOH TIP . C 3 HOH A 142 1142 142 HOH TIP . C 3 HOH A 143 1143 143 HOH TIP . C 3 HOH A 144 1144 144 HOH TIP . C 3 HOH A 145 1145 145 HOH TIP . C 3 HOH A 146 1146 146 HOH TIP . C 3 HOH A 147 1147 147 HOH TIP . C 3 HOH A 148 1148 148 HOH TIP . C 3 HOH A 149 1149 149 HOH TIP . C 3 HOH A 150 1150 150 HOH TIP . C 3 HOH A 151 1151 151 HOH TIP . C 3 HOH A 152 1152 152 HOH TIP . C 3 HOH A 153 1153 153 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA MGP . . . B 2 52.836 113.457 -5.797 1 41.98 ? PA MGP 1000 A 1 HETATM 2 O O1A MGP . . . B 2 53.367 112.086 -6.05 1 41.96 ? O1A MGP 1000 A 1 HETATM 3 O O2A MGP . . . B 2 51.671 113.662 -6.717 1 42.46 ? O2A MGP 1000 A 1 HETATM 4 O O3A MGP . . . B 2 52.369 113.597 -4.273 1 44.96 ? O3A MGP 1000 A 1 HETATM 5 O O5' MGP . . . B 2 53.994 114.601 -6.207 1 37.55 ? O5' MGP 1000 A 1 HETATM 6 P PB MGP . . . B 2 53.299 113.461 -2.953 1 47.87 ? PB MGP 1000 A 1 HETATM 7 O O1B MGP . . . B 2 54.383 112.435 -3.072 1 48.16 ? O1B MGP 1000 A 1 HETATM 8 O O2B MGP . . . B 2 52.376 113.143 -1.861 1 47.4 ? O2B MGP 1000 A 1 HETATM 9 O O3B MGP . . . B 2 53.921 114.746 -2.662 1 50.52 ? O3B MGP 1000 A 1 HETATM 10 P PC MGP . . . B 2 53.459 116.261 -2.413 1 54.25 ? PC MGP 1000 A 1 HETATM 11 O O1C MGP . . . B 2 53.465 116.211 -0.777 1 52.45 ? O1C MGP 1000 A 1 HETATM 12 O O2C MGP . . . B 2 52.054 116.454 -2.924 1 53.79 ? O2C MGP 1000 A 1 HETATM 13 O O3C MGP . . . B 2 54.29 117.415 -2.903 1 53.99 ? O3C MGP 1000 A 1 HETATM 14 C C5' MGP . . . B 2 55.374 114.557 -5.788 1 27.36 ? C5' MGP 1000 A 1 HETATM 15 C C4' MGP . . . B 2 56.376 114.982 -6.824 1 22.56 ? C4' MGP 1000 A 1 HETATM 16 O O4' MGP . . . B 2 56.319 113.99 -7.933 1 20.73 ? O4' MGP 1000 A 1 HETATM 17 C C3' MGP . . . B 2 56.133 116.281 -7.602 1 18.6 ? C3' MGP 1000 A 1 HETATM 18 O O3' MGP . . . B 2 56.442 117.496 -6.876 1 17.02 ? O3' MGP 1000 A 1 HETATM 19 C C2' MGP . . . B 2 56.943 116.093 -8.879 1 19.99 ? C2' MGP 1000 A 1 HETATM 20 O O2' MGP . . . B 2 58.357 116.442 -8.694 1 18.18 ? O2' MGP 1000 A 1 HETATM 21 C C1' MGP . . . B 2 56.652 114.639 -9.222 1 18.81 ? C1' MGP 1000 A 1 HETATM 22 N N9 MGP . . . B 2 55.404 114.346 -10.083 1 16.93 ? N9 MGP 1000 A 1 HETATM 23 C C8 MGP . . . B 2 54.149 113.87 -9.804 1 17.45 ? C8 MGP 1000 A 1 HETATM 24 N N7 MGP . . . B 2 53.433 113.801 -10.915 1 18.29 ? N7 MGP 1000 A 1 HETATM 25 C CM7 MGP . . . B 2 52.04 113.335 -10.981 1 16.44 ? CM7 MGP 1000 A 1 HETATM 26 C C5 MGP . . . B 2 54.198 114.255 -12.111 1 17.81 ? C5 MGP 1000 A 1 HETATM 27 C C6 MGP . . . B 2 54.026 114.407 -13.447 1 18.7 ? C6 MGP 1000 A 1 HETATM 28 O O6 MGP . . . B 2 52.926 114.126 -14.059 1 17.68 ? O6 MGP 1000 A 1 HETATM 29 N N1 MGP . . . B 2 55.192 114.922 -14.146 1 17.07 ? N1 MGP 1000 A 1 HETATM 30 C C2 MGP . . . B 2 56.443 115.261 -13.558 1 18.48 ? C2 MGP 1000 A 1 HETATM 31 N N2 MGP . . . B 2 57.429 115.725 -14.322 1 19.07 ? N2 MGP 1000 A 1 HETATM 32 N N3 MGP . . . B 2 56.621 115.103 -12.189 1 17.69 ? N3 MGP 1000 A 1 HETATM 33 C C4 MGP . . . B 2 55.476 114.589 -11.449 1 17.87 ? C4 MGP 1000 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 33 #