data_1IPE
#
_model_server_result.job_id            '_pOhw36UJHS10cRFfPELpA' 
_model_server_result.datetime_utc      '2025-03-09 04:25:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ipe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":262}' 
#
_entry.id    1IPE 
#
_exptl.entry_id    1IPE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1IPE 
_cell.length_a            88.6 
_cell.length_b            88.6 
_cell.length_c            338.9 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1IPE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,B,C,D,E,F 2 1,2 
A,C,E 3 1 
B,D,F 3 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+5/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 44.3 76.729851 282.416667 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 237 n n 
PA O2A NDP sing 238 n n 
PA O5B NDP sing 239 n n 
PA O3 NDP sing 240 n n 
O2A HOA2 NDP sing 241 n n 
O5B C5B NDP sing 242 n n 
C5B C4B NDP sing 243 n n 
C5B H51A NDP sing 244 n n 
C5B H52A NDP sing 245 n n 
C4B O4B NDP sing 246 n n 
C4B C3B NDP sing 247 n n 
C4B H4B NDP sing 248 n n 
O4B C1B NDP sing 249 n n 
C3B O3B NDP sing 250 n n 
C3B C2B NDP sing 251 n n 
C3B H3B NDP sing 252 n n 
O3B HO3A NDP sing 253 n n 
C2B O2B NDP sing 254 n n 
C2B C1B NDP sing 255 n n 
C2B H2B NDP sing 256 n n 
O2B P2B NDP sing 257 n n 
C1B N9A NDP sing 258 n n 
C1B H1B NDP sing 259 n n 
N9A C8A NDP sing 260 n y 
N9A C4A NDP sing 261 n y 
C8A N7A NDP doub 262 n y 
C8A H8A NDP sing 263 n n 
N7A C5A NDP sing 264 n y 
C5A C6A NDP sing 265 n y 
C5A C4A NDP doub 266 n y 
C6A N6A NDP sing 267 n n 
C6A N1A NDP doub 268 n y 
N6A H61A NDP sing 269 n n 
N6A H62A NDP sing 270 n n 
N1A C2A NDP sing 271 n y 
C2A N3A NDP doub 272 n y 
C2A H2A NDP sing 273 n n 
N3A C4A NDP sing 274 n y 
O3 PN NDP sing 275 n n 
PN O1N NDP doub 276 n n 
PN O2N NDP sing 277 n n 
PN O5D NDP sing 278 n n 
O2N H21N NDP sing 279 n n 
O5D C5D NDP sing 280 n n 
C5D C4D NDP sing 281 n n 
C5D H51N NDP sing 282 n n 
C5D H52N NDP sing 283 n n 
C4D O4D NDP sing 284 n n 
C4D C3D NDP sing 285 n n 
C4D H4D NDP sing 286 n n 
O4D C1D NDP sing 287 n n 
C3D O3D NDP sing 288 n n 
C3D C2D NDP sing 289 n n 
C3D H3D NDP sing 290 n n 
O3D HO3N NDP sing 291 n n 
C2D O2D NDP sing 292 n n 
C2D C1D NDP sing 293 n n 
C2D H2D NDP sing 294 n n 
O2D HO2N NDP sing 295 n n 
C1D N1N NDP sing 296 n n 
C1D H1D NDP sing 297 n n 
N1N C2N NDP sing 298 n n 
N1N C6N NDP sing 299 n n 
C2N C3N NDP doub 300 n n 
C2N H2N NDP sing 301 n n 
C3N C7N NDP sing 302 n n 
C3N C4N NDP sing 303 n n 
C7N O7N NDP doub 304 n n 
C7N N7N NDP sing 305 n n 
N7N H71N NDP sing 306 n n 
N7N H72N NDP sing 307 n n 
C4N C5N NDP sing 308 n n 
C4N H41N NDP sing 309 n n 
C4N H42N NDP sing 310 n n 
C5N C6N NDP doub 311 n n 
C5N H5N NDP sing 312 n n 
C6N H6N NDP sing 313 n n 
P2B O1X NDP doub 314 n n 
P2B O2X NDP sing 315 n n 
P2B O3X NDP sing 316 n n 
O2X HOP2 NDP sing 317 n n 
O3X HOP3 NDP sing 318 n n 
#
_atom_sites.entry_id                     1IPE 
_atom_sites.fract_transf_matrix[1][1]    0.01129 
_atom_sites.fract_transf_matrix[1][2]    0.00652 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01303 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00295 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 261 261 NDP NDP . 
D 2 NDP B 1 262 262 NDP NDP . 
E 3 HOH A 1 262 1 HOH HOH . 
E 3 HOH A 2 263 3 HOH HOH . 
E 3 HOH A 3 264 4 HOH HOH . 
E 3 HOH A 4 265 5 HOH HOH . 
E 3 HOH A 5 266 9 HOH HOH . 
E 3 HOH A 6 267 10 HOH HOH . 
E 3 HOH A 7 268 13 HOH HOH . 
E 3 HOH A 8 269 16 HOH HOH . 
E 3 HOH A 9 270 17 HOH HOH . 
E 3 HOH A 10 271 19 HOH HOH . 
E 3 HOH A 11 272 20 HOH HOH . 
E 3 HOH A 12 273 21 HOH HOH . 
E 3 HOH A 13 274 24 HOH HOH . 
E 3 HOH A 14 275 26 HOH HOH . 
E 3 HOH A 15 276 32 HOH HOH . 
E 3 HOH A 16 277 34 HOH HOH . 
E 3 HOH A 17 278 38 HOH HOH . 
E 3 HOH A 18 279 41 HOH HOH . 
E 3 HOH A 19 280 42 HOH HOH . 
E 3 HOH A 20 281 47 HOH HOH . 
E 3 HOH A 21 282 50 HOH HOH . 
E 3 HOH A 22 283 51 HOH HOH . 
E 3 HOH A 23 284 53 HOH HOH . 
E 3 HOH A 24 285 54 HOH HOH . 
E 3 HOH A 25 286 58 HOH HOH . 
E 3 HOH A 26 287 60 HOH HOH . 
F 3 HOH B 1 263 2 HOH HOH . 
F 3 HOH B 2 264 6 HOH HOH . 
F 3 HOH B 3 265 7 HOH HOH . 
F 3 HOH B 4 266 8 HOH HOH . 
F 3 HOH B 5 267 11 HOH HOH . 
F 3 HOH B 6 268 12 HOH HOH . 
F 3 HOH B 7 269 14 HOH HOH . 
F 3 HOH B 8 270 15 HOH HOH . 
F 3 HOH B 9 271 18 HOH HOH . 
F 3 HOH B 10 272 22 HOH HOH . 
F 3 HOH B 11 273 23 HOH HOH . 
F 3 HOH B 12 274 25 HOH HOH . 
F 3 HOH B 13 275 27 HOH HOH . 
F 3 HOH B 14 276 28 HOH HOH . 
F 3 HOH B 15 277 29 HOH HOH . 
F 3 HOH B 16 278 30 HOH HOH . 
F 3 HOH B 17 279 31 HOH HOH . 
F 3 HOH B 18 280 33 HOH HOH . 
F 3 HOH B 19 281 35 HOH HOH . 
F 3 HOH B 20 282 36 HOH HOH . 
F 3 HOH B 21 283 37 HOH HOH . 
F 3 HOH B 22 284 39 HOH HOH . 
F 3 HOH B 23 285 40 HOH HOH . 
F 3 HOH B 24 286 43 HOH HOH . 
F 3 HOH B 25 287 44 HOH HOH . 
F 3 HOH B 26 288 45 HOH HOH . 
F 3 HOH B 27 289 46 HOH HOH . 
F 3 HOH B 28 290 48 HOH HOH . 
F 3 HOH B 29 291 49 HOH HOH . 
F 3 HOH B 30 292 52 HOH HOH . 
F 3 HOH B 31 293 55 HOH HOH . 
F 3 HOH B 32 294 56 HOH HOH . 
F 3 HOH B 33 295 57 HOH HOH . 
F 3 HOH B 34 296 59 HOH HOH . 
F 3 HOH B 35 297 61 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . D 2 37.911 35.557 165.182 1 12.88 ? PA NDP 262 B 1 
HETATM 2 O O1A NDP . . . D 2 37.792 34.141 165.538 1 9.22 ? O1A NDP 262 B 1 
HETATM 3 O O2A NDP . . . D 2 39.256 36.137 164.991 1 7.89 ? O2A NDP 262 B 1 
HETATM 4 O O5B NDP . . . D 2 37.105 36.455 166.214 1 12.56 ? O5B NDP 262 B 1 
HETATM 5 C C5B NDP . . . D 2 35.687 36.31 166.419 1 7.66 ? C5B NDP 262 B 1 
HETATM 6 C C4B NDP . . . D 2 35.303 37.272 167.533 1 9.43 ? C4B NDP 262 B 1 
HETATM 7 O O4B NDP . . . D 2 33.898 37.06 167.858 1 13.87 ? O4B NDP 262 B 1 
HETATM 8 C C3B NDP . . . D 2 36.041 37.053 168.836 1 8.96 ? C3B NDP 262 B 1 
HETATM 9 O O3B NDP . . . D 2 36.33 38.284 169.552 1 5.88 ? O3B NDP 262 B 1 
HETATM 10 C C2B NDP . . . D 2 35.107 36.145 169.624 1 5.44 ? C2B NDP 262 B 1 
HETATM 11 O O2B NDP . . . D 2 35.375 36.207 171.026 1 9.65 ? O2B NDP 262 B 1 
HETATM 12 C C1B NDP . . . D 2 33.778 36.697 169.242 1 10.73 ? C1B NDP 262 B 1 
HETATM 13 N N9A NDP . . . D 2 32.745 35.671 169.541 1 15.04 ? N9A NDP 262 B 1 
HETATM 14 C C8A NDP . . . D 2 32.57 34.446 168.947 1 18.02 ? C8A NDP 262 B 1 
HETATM 15 N N7A NDP . . . D 2 31.534 33.792 169.468 1 14.57 ? N7A NDP 262 B 1 
HETATM 16 C C5A NDP . . . D 2 31.076 34.638 170.389 1 20.56 ? C5A NDP 262 B 1 
HETATM 17 C C6A NDP . . . D 2 29.955 34.43 171.25 1 17.68 ? C6A NDP 262 B 1 
HETATM 18 N N6A NDP . . . D 2 29.232 33.31 171.205 1 17.67 ? N6A NDP 262 B 1 
HETATM 19 N N1A NDP . . . D 2 29.667 35.464 172.134 1 20.99 ? N1A NDP 262 B 1 
HETATM 20 C C2A NDP . . . D 2 30.399 36.627 172.197 1 22.79 ? C2A NDP 262 B 1 
HETATM 21 N N3A NDP . . . D 2 31.46 36.799 171.367 1 20.56 ? N3A NDP 262 B 1 
HETATM 22 C C4A NDP . . . D 2 31.816 35.827 170.46 1 16.68 ? C4A NDP 262 B 1 
HETATM 23 O O3 NDP . . . D 2 37.056 35.774 163.853 1 12.22 ? O3 NDP 262 B 1 
HETATM 24 P PN NDP . . . D 2 37.198 36.672 162.553 1 22.55 ? PN NDP 262 B 1 
HETATM 25 O O1N NDP . . . D 2 38.176 36.023 161.651 1 14.83 ? O1N NDP 262 B 1 
HETATM 26 O O2N NDP . . . D 2 37.506 38.047 163.031 1 23.09 ? O2N NDP 262 B 1 
HETATM 27 O O5D NDP . . . D 2 35.742 36.621 161.903 1 14.54 ? O5D NDP 262 B 1 
HETATM 28 C C5D NDP . . . D 2 34.735 37.579 162.209 1 20.21 ? C5D NDP 262 B 1 
HETATM 29 C C4D NDP . . . D 2 33.547 37.442 161.269 1 16.65 ? C4D NDP 262 B 1 
HETATM 30 O O4D NDP . . . D 2 34.052 37.416 159.91 1 17.14 ? O4D NDP 262 B 1 
HETATM 31 C C3D NDP . . . D 2 32.762 36.154 161.432 1 16.23 ? C3D NDP 262 B 1 
HETATM 32 O O3D NDP . . . D 2 31.342 36.345 161.334 1 18.59 ? O3D NDP 262 B 1 
HETATM 33 C C2D NDP . . . D 2 33.282 35.239 160.317 1 19.02 ? C2D NDP 262 B 1 
HETATM 34 O O2D NDP . . . D 2 32.287 34.267 160.025 1 17.32 ? O2D NDP 262 B 1 
HETATM 35 C C1D NDP . . . D 2 33.534 36.267 159.212 1 16.69 ? C1D NDP 262 B 1 
HETATM 36 N N1N NDP . . . D 2 34.554 35.869 158.221 1 20.9 ? N1N NDP 262 B 1 
HETATM 37 C C2N NDP . . . D 2 35.991 35.747 158.518 1 25.8 ? C2N NDP 262 B 1 
HETATM 38 C C3N NDP . . . D 2 36.91 35.55 157.434 1 26.16 ? C3N NDP 262 B 1 
HETATM 39 C C7N NDP . . . D 2 38.446 35.407 157.574 1 23.21 ? C7N NDP 262 B 1 
HETATM 40 O O7N NDP . . . D 2 39.077 34.476 157.078 1 26.91 ? O7N NDP 262 B 1 
HETATM 41 N N7N NDP . . . D 2 39.116 36.319 158.257 1 16.03 ? N7N NDP 262 B 1 
HETATM 42 C C4N NDP . . . D 2 36.35 35.484 156.11 1 29.37 ? C4N NDP 262 B 1 
HETATM 43 C C5N NDP . . . D 2 34.942 35.446 155.834 1 31.96 ? C5N NDP 262 B 1 
HETATM 44 C C6N NDP . . . D 2 34.028 35.639 156.905 1 27.36 ? C6N NDP 262 B 1 
HETATM 45 P P2B NDP . . . D 2 35.492 34.873 171.894 1 14.22 ? P2B NDP 262 B 1 
HETATM 46 O O1X NDP . . . D 2 36.311 35.315 173.168 1 8 ? O1X NDP 262 B 1 
HETATM 47 O O2X NDP . . . D 2 36.289 33.898 171.163 1 13.64 ? O2X NDP 262 B 1 
HETATM 48 O O3X NDP . . . D 2 34.137 34.503 172.315 1 14.54 ? O3X NDP 262 B 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           48 
#