data_1IPF # _model_server_result.job_id QwJUAH-x13yziak7Q4fzrw _model_server_result.datetime_utc '2025-03-09 04:25:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ipf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1262}' # _entry.id 1IPF # _exptl.entry_id 1IPF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 139.195 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-METHYL-8-AZABICYCLO[3,2,1]OCTAN-3-ONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1IPF _cell.length_a 88.6 _cell.length_b 88.6 _cell.length_c 337.2 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IPF _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 A,C,D,G 3 1 B,E,F,H 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+5/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 44.3 76.729851 281 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C8 H13 N O' _chem_comp.formula_weight 139.195 _chem_comp.id TNE _chem_comp.mon_nstd_flag . _chem_comp.name 8-METHYL-8-AZABICYCLO[3,2,1]OCTAN-3-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms TROPINONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 TNE sing 388 n n C1 C7 TNE sing 389 n n C1 N8 TNE sing 390 n n C1 H1 TNE sing 391 n n C2 C3 TNE sing 392 n n C2 H21 TNE sing 393 n n C2 H22 TNE sing 394 n n C3 O3 TNE doub 395 n n C3 C4 TNE sing 396 n n C4 C5 TNE sing 397 n n C4 H41 TNE sing 398 n n C4 H42 TNE sing 399 n n C5 C6 TNE sing 400 n n C5 N8 TNE sing 401 n n C5 H5 TNE sing 402 n n C6 C7 TNE sing 403 n n C6 H61 TNE sing 404 n n C6 H62 TNE sing 405 n n C7 H71 TNE sing 406 n n C7 H72 TNE sing 407 n n N8 C9 TNE sing 408 n n C9 H91 TNE sing 409 n n C9 H92 TNE sing 410 n n C9 H93 TNE sing 411 n n # _atom_sites.entry_id 1IPF _atom_sites.fract_transf_matrix[1][1] 0.01129 _atom_sites.fract_transf_matrix[1][2] 0.00652 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01303 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00297 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 261 261 NDP NDP . D 3 TNE A 1 262 262 TNE TNE . E 2 NDP B 1 1261 1261 NDP NDP . F 3 TNE B 1 1262 1262 TNE TNE . G 4 HOH A 1 263 1 HOH HOH . G 4 HOH A 2 264 2 HOH HOH . G 4 HOH A 3 265 3 HOH HOH . G 4 HOH A 4 266 4 HOH HOH . G 4 HOH A 5 267 6 HOH HOH . G 4 HOH A 6 268 10 HOH HOH . G 4 HOH A 7 269 15 HOH HOH . G 4 HOH A 8 270 16 HOH HOH . G 4 HOH A 9 271 17 HOH HOH . G 4 HOH A 10 272 18 HOH HOH . G 4 HOH A 11 273 20 HOH HOH . G 4 HOH A 12 274 21 HOH HOH . G 4 HOH A 13 275 22 HOH HOH . G 4 HOH A 14 276 25 HOH HOH . G 4 HOH A 15 277 28 HOH HOH . G 4 HOH A 16 278 29 HOH HOH . G 4 HOH A 17 279 31 HOH HOH . G 4 HOH A 18 280 32 HOH HOH . G 4 HOH A 19 281 34 HOH HOH . G 4 HOH A 20 282 35 HOH HOH . G 4 HOH A 21 283 36 HOH HOH . G 4 HOH A 22 284 38 HOH HOH . G 4 HOH A 23 285 40 HOH HOH . G 4 HOH A 24 286 43 HOH HOH . G 4 HOH A 25 287 44 HOH HOH . G 4 HOH A 26 288 45 HOH HOH . G 4 HOH A 27 289 46 HOH HOH . G 4 HOH A 28 290 48 HOH HOH . G 4 HOH A 29 291 51 HOH HOH . G 4 HOH A 30 292 52 HOH HOH . G 4 HOH A 31 293 55 HOH HOH . G 4 HOH A 32 294 56 HOH HOH . G 4 HOH A 33 295 58 HOH HOH . G 4 HOH A 34 296 59 HOH HOH . G 4 HOH A 35 297 60 HOH HOH . H 4 HOH B 1 1263 5 HOH HOH . H 4 HOH B 2 1264 7 HOH HOH . H 4 HOH B 3 1265 8 HOH HOH . H 4 HOH B 4 1266 9 HOH HOH . H 4 HOH B 5 1267 11 HOH HOH . H 4 HOH B 6 1268 12 HOH HOH . H 4 HOH B 7 1269 13 HOH HOH . H 4 HOH B 8 1270 14 HOH HOH . H 4 HOH B 9 1271 19 HOH HOH . H 4 HOH B 10 1272 23 HOH HOH . H 4 HOH B 11 1273 24 HOH HOH . H 4 HOH B 12 1274 26 HOH HOH . H 4 HOH B 13 1275 27 HOH HOH . H 4 HOH B 14 1276 30 HOH HOH . H 4 HOH B 15 1277 33 HOH HOH . H 4 HOH B 16 1278 37 HOH HOH . H 4 HOH B 17 1279 39 HOH HOH . H 4 HOH B 18 1280 41 HOH HOH . H 4 HOH B 19 1281 42 HOH HOH . H 4 HOH B 20 1282 47 HOH HOH . H 4 HOH B 21 1283 49 HOH HOH . H 4 HOH B 22 1284 50 HOH HOH . H 4 HOH B 23 1285 53 HOH HOH . H 4 HOH B 24 1286 54 HOH HOH . H 4 HOH B 25 1287 57 HOH HOH . H 4 HOH B 26 1288 61 HOH HOH . H 4 HOH B 27 1289 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TNE . . . F 3 38.04 30.966 153.561 1 34.89 ? C1 TNE 1262 B 1 HETATM 2 C C2 TNE . . . F 3 36.595 31.316 153.125 1 36.22 ? C2 TNE 1262 B 1 HETATM 3 C C3 TNE . . . F 3 35.693 31.707 154.369 1 40.8 ? C3 TNE 1262 B 1 HETATM 4 O O3 TNE . . . F 3 34.607 32.268 154.196 1 47.91 ? O3 TNE 1262 B 1 HETATM 5 C C4 TNE . . . F 3 36.202 31.371 155.839 1 40.23 ? C4 TNE 1262 B 1 HETATM 6 C C5 TNE . . . F 3 37.696 30.989 155.856 1 36.22 ? C5 TNE 1262 B 1 HETATM 7 C C6 TNE . . . F 3 38.522 32.27 155.583 1 27.61 ? C6 TNE 1262 B 1 HETATM 8 C C7 TNE . . . F 3 38.769 32.249 154.064 1 30.14 ? C7 TNE 1262 B 1 HETATM 9 N N8 TNE . . . F 3 37.93 30.069 154.732 1 38.99 ? N8 TNE 1262 B 1 HETATM 10 C C9 TNE . . . F 3 39.191 29.307 154.926 1 42.58 ? C9 TNE 1262 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #