data_1IPF # _model_server_result.job_id phPGH61P7AXHs8wWJ7_8Iw _model_server_result.datetime_utc '2025-03-09 04:25:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ipf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":261}' # _entry.id 1IPF # _exptl.entry_id 1IPF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1IPF _cell.length_a 88.6 _cell.length_b 88.6 _cell.length_c 337.2 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IPF _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 A,C,D,G 3 1 B,E,F,H 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+5/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 44.3 76.729851 281 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 1IPF _atom_sites.fract_transf_matrix[1][1] 0.01129 _atom_sites.fract_transf_matrix[1][2] 0.00652 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01303 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00297 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 261 261 NDP NDP . D 3 TNE A 1 262 262 TNE TNE . E 2 NDP B 1 1261 1261 NDP NDP . F 3 TNE B 1 1262 1262 TNE TNE . G 4 HOH A 1 263 1 HOH HOH . G 4 HOH A 2 264 2 HOH HOH . G 4 HOH A 3 265 3 HOH HOH . G 4 HOH A 4 266 4 HOH HOH . G 4 HOH A 5 267 6 HOH HOH . G 4 HOH A 6 268 10 HOH HOH . G 4 HOH A 7 269 15 HOH HOH . G 4 HOH A 8 270 16 HOH HOH . G 4 HOH A 9 271 17 HOH HOH . G 4 HOH A 10 272 18 HOH HOH . G 4 HOH A 11 273 20 HOH HOH . G 4 HOH A 12 274 21 HOH HOH . G 4 HOH A 13 275 22 HOH HOH . G 4 HOH A 14 276 25 HOH HOH . G 4 HOH A 15 277 28 HOH HOH . G 4 HOH A 16 278 29 HOH HOH . G 4 HOH A 17 279 31 HOH HOH . G 4 HOH A 18 280 32 HOH HOH . G 4 HOH A 19 281 34 HOH HOH . G 4 HOH A 20 282 35 HOH HOH . G 4 HOH A 21 283 36 HOH HOH . G 4 HOH A 22 284 38 HOH HOH . G 4 HOH A 23 285 40 HOH HOH . G 4 HOH A 24 286 43 HOH HOH . G 4 HOH A 25 287 44 HOH HOH . G 4 HOH A 26 288 45 HOH HOH . G 4 HOH A 27 289 46 HOH HOH . G 4 HOH A 28 290 48 HOH HOH . G 4 HOH A 29 291 51 HOH HOH . G 4 HOH A 30 292 52 HOH HOH . G 4 HOH A 31 293 55 HOH HOH . G 4 HOH A 32 294 56 HOH HOH . G 4 HOH A 33 295 58 HOH HOH . G 4 HOH A 34 296 59 HOH HOH . G 4 HOH A 35 297 60 HOH HOH . H 4 HOH B 1 1263 5 HOH HOH . H 4 HOH B 2 1264 7 HOH HOH . H 4 HOH B 3 1265 8 HOH HOH . H 4 HOH B 4 1266 9 HOH HOH . H 4 HOH B 5 1267 11 HOH HOH . H 4 HOH B 6 1268 12 HOH HOH . H 4 HOH B 7 1269 13 HOH HOH . H 4 HOH B 8 1270 14 HOH HOH . H 4 HOH B 9 1271 19 HOH HOH . H 4 HOH B 10 1272 23 HOH HOH . H 4 HOH B 11 1273 24 HOH HOH . H 4 HOH B 12 1274 26 HOH HOH . H 4 HOH B 13 1275 27 HOH HOH . H 4 HOH B 14 1276 30 HOH HOH . H 4 HOH B 15 1277 33 HOH HOH . H 4 HOH B 16 1278 37 HOH HOH . H 4 HOH B 17 1279 39 HOH HOH . H 4 HOH B 18 1280 41 HOH HOH . H 4 HOH B 19 1281 42 HOH HOH . H 4 HOH B 20 1282 47 HOH HOH . H 4 HOH B 21 1283 49 HOH HOH . H 4 HOH B 22 1284 50 HOH HOH . H 4 HOH B 23 1285 53 HOH HOH . H 4 HOH B 24 1286 54 HOH HOH . H 4 HOH B 25 1287 57 HOH HOH . H 4 HOH B 26 1288 61 HOH HOH . H 4 HOH B 27 1289 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 2 1.006 24.211 149.207 1 9.53 ? PA NDP 261 A 1 HETATM 2 O O1A NDP . . . C 2 0.588 24.71 150.542 1 17.11 ? O1A NDP 261 A 1 HETATM 3 O O2A NDP . . . C 2 0.067 24.27 148.065 1 11.52 ? O2A NDP 261 A 1 HETATM 4 O O5B NDP . . . C 2 1.568 22.763 149.36 1 9.68 ? O5B NDP 261 A 1 HETATM 5 C C5B NDP . . . C 2 2.604 22.493 150.307 1 6.69 ? C5B NDP 261 A 1 HETATM 6 C C4B NDP . . . C 2 2.628 21.007 150.466 1 11.06 ? C4B NDP 261 A 1 HETATM 7 O O4B NDP . . . C 2 3.686 20.688 151.389 1 11.55 ? O4B NDP 261 A 1 HETATM 8 C C3B NDP . . . C 2 1.359 20.438 151.067 1 15.51 ? C3B NDP 261 A 1 HETATM 9 O O3B NDP . . . C 2 0.979 19.146 150.501 1 25.13 ? O3B NDP 261 A 1 HETATM 10 C C2B NDP . . . C 2 1.684 20.33 152.546 1 10.55 ? C2B NDP 261 A 1 HETATM 11 O O2B NDP . . . C 2 0.816 19.348 153.172 1 24.68 ? O2B NDP 261 A 1 HETATM 12 C C1B NDP . . . C 2 3.139 19.928 152.461 1 15.45 ? C1B NDP 261 A 1 HETATM 13 N N9A NDP . . . C 2 3.751 20.164 153.782 1 15.04 ? N9A NDP 261 A 1 HETATM 14 C C8A NDP . . . C 2 3.952 21.354 154.431 1 10.61 ? C8A NDP 261 A 1 HETATM 15 N N7A NDP . . . C 2 4.535 21.164 155.62 1 14.53 ? N7A NDP 261 A 1 HETATM 16 C C5A NDP . . . C 2 4.689 19.845 155.678 1 11.15 ? C5A NDP 261 A 1 HETATM 17 C C6A NDP . . . C 2 5.265 19.102 156.751 1 16.83 ? C6A NDP 261 A 1 HETATM 18 N N6A NDP . . . C 2 5.726 19.694 157.855 1 17.67 ? N6A NDP 261 A 1 HETATM 19 N N1A NDP . . . C 2 5.315 17.719 156.572 1 22.85 ? N1A NDP 261 A 1 HETATM 20 C C2A NDP . . . C 2 4.842 17.079 155.437 1 19.11 ? C2A NDP 261 A 1 HETATM 21 N N3A NDP . . . C 2 4.293 17.81 154.432 1 10.21 ? N3A NDP 261 A 1 HETATM 22 C C4A NDP . . . C 2 4.205 19.187 154.532 1 13.84 ? C4A NDP 261 A 1 HETATM 23 O O3 NDP . . . C 2 2.328 24.984 148.801 1 12.49 ? O3 NDP 261 A 1 HETATM 24 P PN NDP . . . C 2 3.084 25.256 147.457 1 13.09 ? PN NDP 261 A 1 HETATM 25 O O1N NDP . . . C 2 2.683 26.566 146.954 1 6.62 ? O1N NDP 261 A 1 HETATM 26 O O2N NDP . . . C 2 2.818 24.073 146.617 1 18.99 ? O2N NDP 261 A 1 HETATM 27 O O5D NDP . . . C 2 4.601 25.317 147.89 1 8.49 ? O5D NDP 261 A 1 HETATM 28 C C5D NDP . . . C 2 5.477 24.203 147.79 1 7 ? C5D NDP 261 A 1 HETATM 29 C C4D NDP . . . C 2 6.926 24.669 147.72 1 5.11 ? C4D NDP 261 A 1 HETATM 30 O O4D NDP . . . C 2 6.993 25.729 146.747 1 7.69 ? O4D NDP 261 A 1 HETATM 31 C C3D NDP . . . C 2 7.469 25.278 149.014 1 2.21 ? C3D NDP 261 A 1 HETATM 32 O O3D NDP . . . C 2 8.853 24.946 149.225 1 4.8 ? O3D NDP 261 A 1 HETATM 33 C C2D NDP . . . C 2 7.283 26.786 148.837 1 3.93 ? C2D NDP 261 A 1 HETATM 34 O O2D NDP . . . C 2 8.167 27.486 149.738 1 2.53 ? O2D NDP 261 A 1 HETATM 35 C C1D NDP . . . C 2 7.631 26.896 147.344 1 8.5 ? C1D NDP 261 A 1 HETATM 36 N N1N NDP . . . C 2 7.081 28.085 146.661 1 2.78 ? N1N NDP 261 A 1 HETATM 37 C C2N NDP . . . C 2 5.688 28.193 146.247 1 14.66 ? C2N NDP 261 A 1 HETATM 38 C C3N NDP . . . C 2 5.282 29.314 145.464 1 2 ? C3N NDP 261 A 1 HETATM 39 C C7N NDP . . . C 2 3.845 29.548 144.964 1 8.07 ? C7N NDP 261 A 1 HETATM 40 O O7N NDP . . . C 2 3.514 30.517 144.292 1 9.32 ? O7N NDP 261 A 1 HETATM 41 N N7N NDP . . . C 2 2.911 28.662 145.274 1 13.17 ? N7N NDP 261 A 1 HETATM 42 C C4N NDP . . . C 2 6.297 30.279 145.129 1 7.32 ? C4N NDP 261 A 1 HETATM 43 C C5N NDP . . . C 2 7.642 30.243 145.633 1 8.24 ? C5N NDP 261 A 1 HETATM 44 C C6N NDP . . . C 2 8.04 29.13 146.412 1 6.96 ? C6N NDP 261 A 1 HETATM 45 P P2B NDP . . . C 2 0.154 19.521 154.622 1 10.88 ? P2B NDP 261 A 1 HETATM 46 O O1X NDP . . . C 2 -1.226 18.798 154.47 1 9.83 ? O1X NDP 261 A 1 HETATM 47 O O2X NDP . . . C 2 -0.09 20.939 154.881 1 12.33 ? O2X NDP 261 A 1 HETATM 48 O O3X NDP . . . C 2 0.963 18.751 155.58 1 18.23 ? O3X NDP 261 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #