data_1IPW # _model_server_result.job_id Dco06yY9jJ9ypcmLesYiXQ _model_server_result.datetime_utc '2024-10-19 09:18:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ipw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":176}' # _entry.id 1IPW # _exptl.entry_id 1IPW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1IPW _cell.length_a 109.4 _cell.length_b 109.4 _cell.length_c 154.3 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IPW _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 65 A ASP 65 1_555 C MG MG . A MG 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc2 A OD1 ASP 102 A ASP 102 1_555 C MG MG . A MG 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc3 C MG MG . A MG 176 1_555 F O HOH . A HOH 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.763 ? metalc ? metalc4 C MG MG . A MG 176 1_555 F O HOH . A HOH 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.733 ? metalc ? metalc5 F O HOH . A HOH 224 1_555 E MG MG . B MG 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc6 F O HOH . A HOH 228 1_555 E MG MG . B MG 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc7 F O HOH . A HOH 229 1_555 E MG MG . B MG 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? metalc ? metalc8 B OD2 ASP 65 B ASP 65 1_555 D MG MG . B MG 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.805 ? metalc ? metalc9 B OD1 ASP 65 B ASP 65 1_555 D MG MG . B MG 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? metalc ? metalc10 B OD1 ASP 102 B ASP 102 1_555 D MG MG . B MG 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc11 D MG MG . B MG 176 1_555 G O HOH . B HOH 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.785 ? metalc ? metalc12 D MG MG . B MG 176 1_555 G O HOH . B HOH 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc13 D MG MG . B MG 176 1_555 G O HOH . B HOH 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.695 ? metalc ? metalc14 D MG MG . B MG 176 1_555 G O HOH . B HOH 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc15 E MG MG . B MG 177 1_555 G O HOH . B HOH 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc16 E MG MG . B MG 177 1_555 G O HOH . B HOH 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc17 E MG MG . B MG 177 1_555 G O HOH . B HOH 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1IPW _atom_sites.fract_transf_matrix[1][1] 0.009141 _atom_sites.fract_transf_matrix[1][2] 0.005277 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010555 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006481 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 176 1 MG MG . D 2 MG B 1 176 2 MG MG . E 2 MG B 1 177 3 MG MG . F 3 HOH A 1 177 1 HOH HOH . F 3 HOH A 2 178 2 HOH HOH . F 3 HOH A 3 179 3 HOH HOH . F 3 HOH A 4 180 4 HOH HOH . F 3 HOH A 5 181 10 HOH HOH . F 3 HOH A 6 182 11 HOH HOH . F 3 HOH A 7 183 12 HOH HOH . F 3 HOH A 8 184 13 HOH HOH . F 3 HOH A 9 185 14 HOH HOH . F 3 HOH A 10 186 15 HOH HOH . F 3 HOH A 11 187 16 HOH HOH . F 3 HOH A 12 188 17 HOH HOH . F 3 HOH A 13 189 18 HOH HOH . F 3 HOH A 14 190 19 HOH HOH . F 3 HOH A 15 191 20 HOH HOH . F 3 HOH A 16 192 21 HOH HOH . F 3 HOH A 17 193 22 HOH HOH . F 3 HOH A 18 194 32 HOH HOH . F 3 HOH A 19 195 33 HOH HOH . F 3 HOH A 20 196 34 HOH HOH . F 3 HOH A 21 197 35 HOH HOH . F 3 HOH A 22 198 37 HOH HOH . F 3 HOH A 23 199 38 HOH HOH . F 3 HOH A 24 200 39 HOH HOH . F 3 HOH A 25 201 42 HOH HOH . F 3 HOH A 26 202 47 HOH HOH . F 3 HOH A 27 203 48 HOH HOH . F 3 HOH A 28 204 49 HOH HOH . F 3 HOH A 29 205 50 HOH HOH . F 3 HOH A 30 206 51 HOH HOH . F 3 HOH A 31 207 56 HOH HOH . F 3 HOH A 32 208 57 HOH HOH . F 3 HOH A 33 209 58 HOH HOH . F 3 HOH A 34 210 59 HOH HOH . F 3 HOH A 35 211 63 HOH HOH . F 3 HOH A 36 212 65 HOH HOH . F 3 HOH A 37 213 66 HOH HOH . F 3 HOH A 38 214 67 HOH HOH . F 3 HOH A 39 215 68 HOH HOH . F 3 HOH A 40 216 69 HOH HOH . F 3 HOH A 41 217 70 HOH HOH . F 3 HOH A 42 218 71 HOH HOH . F 3 HOH A 43 219 72 HOH HOH . F 3 HOH A 44 220 73 HOH HOH . F 3 HOH A 45 221 74 HOH HOH . F 3 HOH A 46 222 75 HOH HOH . F 3 HOH A 47 223 76 HOH HOH . F 3 HOH A 48 224 88 HOH HOH . F 3 HOH A 49 225 89 HOH HOH . F 3 HOH A 50 226 95 HOH HOH . F 3 HOH A 51 227 97 HOH HOH . F 3 HOH A 52 228 101 HOH HOH . F 3 HOH A 53 229 104 HOH HOH . F 3 HOH A 54 230 108 HOH HOH . F 3 HOH A 55 231 109 HOH HOH . G 3 HOH B 1 178 5 HOH HOH . G 3 HOH B 2 179 6 HOH HOH . G 3 HOH B 3 180 7 HOH HOH . G 3 HOH B 4 181 8 HOH HOH . G 3 HOH B 5 182 9 HOH HOH . G 3 HOH B 6 183 23 HOH HOH . G 3 HOH B 7 184 24 HOH HOH . G 3 HOH B 8 185 25 HOH HOH . G 3 HOH B 9 186 26 HOH HOH . G 3 HOH B 10 187 27 HOH HOH . G 3 HOH B 11 188 28 HOH HOH . G 3 HOH B 12 189 29 HOH HOH . G 3 HOH B 13 190 30 HOH HOH . G 3 HOH B 14 191 31 HOH HOH . G 3 HOH B 15 192 36 HOH HOH . G 3 HOH B 16 193 40 HOH HOH . G 3 HOH B 17 194 41 HOH HOH . G 3 HOH B 18 195 43 HOH HOH . G 3 HOH B 19 196 44 HOH HOH . G 3 HOH B 20 197 45 HOH HOH . G 3 HOH B 21 198 46 HOH HOH . G 3 HOH B 22 199 52 HOH HOH . G 3 HOH B 23 200 53 HOH HOH . G 3 HOH B 24 201 54 HOH HOH . G 3 HOH B 25 202 55 HOH HOH . G 3 HOH B 26 203 60 HOH HOH . G 3 HOH B 27 204 61 HOH HOH . G 3 HOH B 28 205 62 HOH HOH . G 3 HOH B 29 206 64 HOH HOH . G 3 HOH B 30 207 77 HOH HOH . G 3 HOH B 31 208 78 HOH HOH . G 3 HOH B 32 209 79 HOH HOH . G 3 HOH B 33 210 80 HOH HOH . G 3 HOH B 34 211 81 HOH HOH . G 3 HOH B 35 212 82 HOH HOH . G 3 HOH B 36 213 83 HOH HOH . G 3 HOH B 37 214 84 HOH HOH . G 3 HOH B 38 215 85 HOH HOH . G 3 HOH B 39 216 86 HOH HOH . G 3 HOH B 40 217 87 HOH HOH . G 3 HOH B 41 218 90 HOH HOH . G 3 HOH B 42 219 91 HOH HOH . G 3 HOH B 43 220 92 HOH HOH . G 3 HOH B 44 221 93 HOH HOH . G 3 HOH B 45 222 94 HOH HOH . G 3 HOH B 46 223 96 HOH HOH . G 3 HOH B 47 224 98 HOH HOH . G 3 HOH B 48 225 99 HOH HOH . G 3 HOH B 49 226 100 HOH HOH . G 3 HOH B 50 227 102 HOH HOH . G 3 HOH B 51 228 103 HOH HOH . G 3 HOH B 52 229 105 HOH HOH . G 3 HOH B 53 230 106 HOH HOH . G 3 HOH B 54 231 107 HOH HOH . G 3 HOH B 55 232 110 HOH HOH . G 3 HOH B 56 233 112 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 16.318 _atom_site.Cartn_y 17.792 _atom_site.Cartn_z 55.227 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 21.76 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 176 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #