data_1IQF # _model_server_result.job_id RGgLx0N_0JBoBUIpLdIbNg _model_server_result.datetime_utc '2024-11-22 07:10:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1iqf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 1IQF # _exptl.entry_id 1IQF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 571.088 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-4-[(6-CHLORO-2-NAPHTHALENYL)SULFONYL]-6-OXO-1-[[1-(4-PYRIDINYL)-4-PIPERIDINYL]METHYL]-2-PIPERAZINECARBOXYLIC ACID ETHYL ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1IQF _cell.length_a 72.29 _cell.length_b 78.04 _cell.length_c 56.63 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IQF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 12 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 27 A CYS 42 1_555 A SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 A SG CYS 108 A CYS 122 1_555 B SG CYS 89 L CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 A SG CYS 156 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf5 A SG CYS 181 A CYS 191 1_555 A SG CYS 209 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 B SG CYS 46 L CYS 89 1_555 B SG CYS 57 L CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf7 B SG CYS 53 L CYS 96 1_555 B SG CYS 66 L CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 B SG CYS 68 L CYS 111 1_555 B SG CYS 81 L CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc1 A OE1 GLU 63 A GLU 77 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? metalc ? metalc2 A OE1 GLU 66 A GLU 80 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? # _chem_comp.formula 'C28 H31 Cl N4 O5 S' _chem_comp.formula_weight 571.088 _chem_comp.id XMD _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-4-[(6-CHLORO-2-NAPHTHALENYL)SULFONYL]-6-OXO-1-[[1-(4-PYRIDINYL)-4-PIPERIDINYL]METHYL]-2-PIPERAZINECARBOXYLIC ACID ETHYL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 XMD sing 374 n y C1 C6 XMD doub 375 n y C1 H1 XMD sing 376 n n C2 C5 XMD doub 377 n y C2 S12 XMD sing 378 n n C3 C4 XMD doub 379 n y C3 C6 XMD sing 380 n y C3 C9 XMD sing 381 n y C4 C5 XMD sing 382 n y C4 H4 XMD sing 383 n n C5 H5 XMD sing 384 n n C6 C8 XMD sing 385 n y CL7 C11 XMD sing 386 n n C8 C10 XMD doub 387 n y C8 H8 XMD sing 388 n n C9 C11 XMD doub 389 n y C9 H9 XMD sing 390 n n C10 C11 XMD sing 391 n y C10 H10 XMD sing 392 n n S12 O13 XMD doub 393 n n S12 N21 XMD sing 394 n n S12 O26 XMD doub 395 n n C14 C15 XMD sing 396 n n C14 C20 XMD sing 397 n n C14 N25 XMD sing 398 n n C14 H14 XMD sing 399 n n C15 O16 XMD sing 400 n n C15 O19 XMD doub 401 n n O16 C17 XMD sing 402 n n C17 C18 XMD sing 403 n n C17 H171 XMD sing 404 n n C17 H172 XMD sing 405 n n C18 H181 XMD sing 406 n n C18 H182 XMD sing 407 n n C18 H183 XMD sing 408 n n C20 N21 XMD sing 409 n n C20 H201 XMD sing 410 n n C20 H202 XMD sing 411 n n N21 C24 XMD sing 412 n n C22 O23 XMD doub 413 n n C22 C24 XMD sing 414 n n C22 N25 XMD sing 415 n n C24 H241 XMD sing 416 n n C24 H242 XMD sing 417 n n N25 C27 XMD sing 418 n n C27 C35 XMD sing 419 n n C27 H271 XMD sing 420 n n C27 H272 XMD sing 421 n n C28 C31 XMD doub 422 n y C28 N37 XMD sing 423 n y C28 H28 XMD sing 424 n n N29 C30 XMD sing 425 n n N29 C32 XMD sing 426 n n N29 C34 XMD sing 427 n n C30 C31 XMD sing 428 n y C30 C33 XMD doub 429 n y C31 H31 XMD sing 430 n n C32 C36 XMD sing 431 n n C32 H321 XMD sing 432 n n C32 H322 XMD sing 433 n n C33 C38 XMD sing 434 n y C33 H33 XMD sing 435 n n C34 C39 XMD sing 436 n n C34 H341 XMD sing 437 n n C34 H342 XMD sing 438 n n C35 C36 XMD sing 439 n n C35 C39 XMD sing 440 n n C35 H35 XMD sing 441 n n C36 H361 XMD sing 442 n n C36 H362 XMD sing 443 n n N37 C38 XMD doub 444 n y C38 H38 XMD sing 445 n n C39 H391 XMD sing 446 n n C39 H392 XMD sing 447 n n # _atom_sites.entry_id 1IQF _atom_sites.fract_transf_matrix[1][1] 0.013833 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012814 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017658 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 301 301 CA CA . D 4 XMD A 1 401 401 XMD XMD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 XMD . . . D 4 8.195 25.68 8.385 1 7.61 ? C1 XMD 401 A 1 HETATM 2 C C2 XMD . . . D 4 8.772 24.421 7.935 1 11.33 ? C2 XMD 401 A 1 HETATM 3 C C3 XMD . . . D 4 8.163 24.829 10.819 1 3.62 ? C3 XMD 401 A 1 HETATM 4 C C4 XMD . . . D 4 8.746 23.558 10.341 1 6.31 ? C4 XMD 401 A 1 HETATM 5 C C5 XMD . . . D 4 9.037 23.37 8.947 1 9.58 ? C5 XMD 401 A 1 HETATM 6 C C6 XMD . . . D 4 7.878 25.931 9.791 1 3.39 ? C6 XMD 401 A 1 HETATM 7 CL CL7 XMD . . . D 4 6.921 26.645 14.368 1 11.7 ? CL7 XMD 401 A 1 HETATM 8 C C8 XMD . . . D 4 7.299 27.201 10.266 1 3.36 ? C8 XMD 401 A 1 HETATM 9 C C9 XMD . . . D 4 7.85 25.088 12.231 1 5.84 ? C9 XMD 401 A 1 HETATM 10 C C10 XMD . . . D 4 7.015 27.398 11.656 1 4.91 ? C10 XMD 401 A 1 HETATM 11 C C11 XMD . . . D 4 7.283 26.353 12.661 1 8.6 ? C11 XMD 401 A 1 HETATM 12 S S12 XMD . . . D 4 9.148 24.154 6.238 1 13.06 ? S12 XMD 401 A 1 HETATM 13 O O13 XMD . . . D 4 9.204 25.489 5.459 1 10.82 ? O13 XMD 401 A 1 HETATM 14 C C14 XMD . . . D 4 5.565 22.753 4.669 1 31.5 ? C14 XMD 401 A 1 HETATM 15 C C15 XMD . . . D 4 4.124 23.303 4.759 1 38.47 ? C15 XMD 401 A 1 HETATM 16 O O16 XMD . . . D 4 3.831 24.199 3.75 1 42.61 ? O16 XMD 401 A 1 HETATM 17 C C17 XMD . . . D 4 2.627 23.985 2.916 1 43.82 ? C17 XMD 401 A 1 HETATM 18 C C18 XMD . . . D 4 2.951 24.258 1.436 1 42.39 ? C18 XMD 401 A 1 HETATM 19 O O19 XMD . . . D 4 3.333 22.953 5.618 1 47.2 ? O19 XMD 401 A 1 HETATM 20 C C20 XMD . . . D 4 6.512 23.51 5.67 1 25.76 ? C20 XMD 401 A 1 HETATM 21 N N21 XMD . . . D 4 7.957 23.162 5.476 1 18.97 ? N21 XMD 401 A 1 HETATM 22 C C22 XMD . . . D 4 7.128 20.704 4.925 1 22.65 ? C22 XMD 401 A 1 HETATM 23 O O23 XMD . . . D 4 7.424 19.51 4.885 1 22.37 ? O23 XMD 401 A 1 HETATM 24 C C24 XMD . . . D 4 8.259 21.699 5.37 1 20.51 ? C24 XMD 401 A 1 HETATM 25 N N25 XMD . . . D 4 5.82 21.24 4.607 1 26.57 ? N25 XMD 401 A 1 HETATM 26 O O26 XMD . . . D 4 10.512 23.456 6.094 1 13.26 ? O26 XMD 401 A 1 HETATM 27 C C27 XMD . . . D 4 4.709 20.299 4.189 1 30.34 ? C27 XMD 401 A 1 HETATM 28 C C28 XMD . . . D 4 0.187 17.618 10.43 1 38.3 ? C28 XMD 401 A 1 HETATM 29 N N29 XMD . . . D 4 1.523 19.081 7.047 1 38.71 ? N29 XMD 401 A 1 HETATM 30 C C30 XMD . . . D 4 0.758 18.254 8.057 1 38.61 ? C30 XMD 401 A 1 HETATM 31 C C31 XMD . . . D 4 0.939 18.434 9.518 1 37.34 ? C31 XMD 401 A 1 HETATM 32 C C32 XMD . . . D 4 1.356 18.909 5.544 1 38.3 ? C32 XMD 401 A 1 HETATM 33 C C33 XMD . . . D 4 -0.217 17.208 7.644 1 38.45 ? C33 XMD 401 A 1 HETATM 34 C C34 XMD . . . D 4 2.535 20.142 7.445 1 35.95 ? C34 XMD 401 A 1 HETATM 35 C C35 XMD . . . D 4 3.987 19.431 5.279 1 33 ? C35 XMD 401 A 1 HETATM 36 C C36 XMD . . . D 4 2.681 18.696 4.739 1 35.29 ? C36 XMD 401 A 1 HETATM 37 N N37 XMD . . . D 4 -0.713 16.651 10.008 1 38.3 ? N37 XMD 401 A 1 HETATM 38 C C38 XMD . . . D 4 -0.911 16.451 8.653 1 39.7 ? C38 XMD 401 A 1 HETATM 39 C C39 XMD . . . D 4 3.945 20.014 6.77 1 32.68 ? C39 XMD 401 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 39 #