data_1IQH # _model_server_result.job_id '_hVX6620MCx1r5qz5fxrVg' _model_server_result.datetime_utc '2024-11-22 09:44:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1iqh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 1IQH # _exptl.entry_id 1IQH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 529.051 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(6-CHLORO-2-NAPHTHALENYL)SULFONYL]-1-[[4-HYDROXYMETHYL-1-(4-PYRIDINYL)-4-PIPERIDINYL]METHYL]PIPERAZINONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1IQH _cell.length_a 71.93 _cell.length_b 78.25 _cell.length_c 56.17 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IQH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 12 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 27 A CYS 42 1_555 A SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 108 A CYS 122 1_555 B SG CYS 89 L CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 156 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf5 A SG CYS 181 A CYS 191 1_555 A SG CYS 209 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 B SG CYS 46 L CYS 89 1_555 B SG CYS 57 L CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 B SG CYS 53 L CYS 96 1_555 B SG CYS 66 L CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf8 B SG CYS 68 L CYS 111 1_555 B SG CYS 81 L CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A OD1 ASP 56 A ASP 70 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc2 A O ASN 58 A ASN 72 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? metalc ? metalc3 A OE1 GLU 63 A GLU 77 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc4 A OE1 GLU 66 A GLU 80 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? # _chem_comp.formula 'C26 H29 Cl N4 O4 S' _chem_comp.formula_weight 529.051 _chem_comp.id XMF _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(6-CHLORO-2-NAPHTHALENYL)SULFONYL]-1-[[4-HYDROXYMETHYL-1-(4-PYRIDINYL)-4-PIPERIDINYL]METHYL]PIPERAZINONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 XMF sing 374 n y C1 C6 XMF doub 375 n y C1 H1 XMF sing 376 n n C2 C5 XMF doub 377 n y C2 S12 XMF sing 378 n n C3 C4 XMF doub 379 n y C3 C6 XMF sing 380 n y C3 C9 XMF sing 381 n y C4 C5 XMF sing 382 n y C4 H4 XMF sing 383 n n C5 H5 XMF sing 384 n n C6 C8 XMF sing 385 n y CL7 C11 XMF sing 386 n n C8 C10 XMF doub 387 n y C8 H18 XMF sing 388 n n C9 C11 XMF doub 389 n y C9 H9 XMF sing 390 n n C10 C11 XMF sing 391 n y C10 H10 XMF sing 392 n n S12 O13 XMF doub 393 n n S12 N16 XMF sing 394 n n S12 O21 XMF doub 395 n n C14 C15 XMF sing 396 n n C14 N20 XMF sing 397 n n C14 H141 XMF sing 398 n n C14 H142 XMF sing 399 n n C15 N16 XMF sing 400 n n C15 H151 XMF sing 401 n n C15 H152 XMF sing 402 n n N16 C19 XMF sing 403 n n C17 O18 XMF doub 404 n n C17 C19 XMF sing 405 n n C17 N20 XMF sing 406 n n C19 H191 XMF sing 407 n n C19 H192 XMF sing 408 n n N20 C22 XMF sing 409 n n C22 C30 XMF sing 410 n n C22 H221 XMF sing 411 n n C22 H222 XMF sing 412 n n C23 C26 XMF doub 413 n y C23 N34 XMF sing 414 n y C23 H23 XMF sing 415 n n N24 C25 XMF sing 416 n n N24 C27 XMF sing 417 n n N24 C29 XMF sing 418 n n C25 C26 XMF sing 419 n y C25 C28 XMF doub 420 n y C26 H26 XMF sing 421 n n C27 C33 XMF sing 422 n n C27 H271 XMF sing 423 n n C27 H272 XMF sing 424 n n C28 C35 XMF sing 425 n y C28 H28 XMF sing 426 n n C29 C36 XMF sing 427 n n C29 H291 XMF sing 428 n n C29 H292 XMF sing 429 n n C30 C31 XMF sing 430 n n C30 C33 XMF sing 431 n n C30 C36 XMF sing 432 n n C31 O32 XMF sing 433 n n C31 H311 XMF sing 434 n n C31 H312 XMF sing 435 n n O32 H32 XMF sing 436 n n C33 H331 XMF sing 437 n n C33 H332 XMF sing 438 n n N34 C35 XMF doub 439 n y C35 H35 XMF sing 440 n n C36 H361 XMF sing 441 n n C36 H362 XMF sing 442 n n # _atom_sites.entry_id 1IQH _atom_sites.fract_transf_matrix[1][1] 0.013902 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01278 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017803 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 301 301 CA CA . D 4 XMF A 1 401 401 XMF XMF . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 XMF . . . D 4 7.957 25.16 8.2 1 10.29 ? C1 XMF 401 A 1 HETATM 2 C C2 XMF . . . D 4 8.619 23.925 7.833 1 11.49 ? C2 XMF 401 A 1 HETATM 3 C C3 XMF . . . D 4 8.117 24.527 10.697 1 8.09 ? C3 XMF 401 A 1 HETATM 4 C C4 XMF . . . D 4 8.791 23.271 10.301 1 9.91 ? C4 XMF 401 A 1 HETATM 5 C C5 XMF . . . D 4 9.03 22.987 8.912 1 12.48 ? C5 XMF 401 A 1 HETATM 6 C C6 XMF . . . D 4 7.685 25.507 9.591 1 8.41 ? C6 XMF 401 A 1 HETATM 7 CL CL7 XMF . . . D 4 6.86 26.543 14.082 1 13.91 ? CL7 XMF 401 A 1 HETATM 8 C C8 XMF . . . D 4 7.012 26.76 9.978 1 4.72 ? C8 XMF 401 A 1 HETATM 9 C C9 XMF . . . D 4 7.842 24.887 12.086 1 8.08 ? C9 XMF 401 A 1 HETATM 10 C C10 XMF . . . D 4 6.775 27.051 11.349 1 6.19 ? C10 XMF 401 A 1 HETATM 11 C C11 XMF . . . D 4 7.18 26.132 12.417 1 7.01 ? C11 XMF 401 A 1 HETATM 12 S S12 XMF . . . D 4 8.916 23.568 6.153 1 11.74 ? S12 XMF 401 A 1 HETATM 13 O O13 XMF . . . D 4 8.934 24.872 5.331 1 9.76 ? O13 XMF 401 A 1 HETATM 14 C C14 XMF . . . D 4 5.278 22.208 4.616 1 16.28 ? C14 XMF 401 A 1 HETATM 15 C C15 XMF . . . D 4 6.301 23.131 5.366 1 16.04 ? C15 XMF 401 A 1 HETATM 16 N N16 XMF . . . D 4 7.676 22.54 5.511 1 11.92 ? N16 XMF 401 A 1 HETATM 17 C C17 XMF . . . D 4 6.515 20.175 5.605 1 19.91 ? C17 XMF 401 A 1 HETATM 18 O O18 XMF . . . D 4 6.626 18.983 5.899 1 23.25 ? O18 XMF 401 A 1 HETATM 19 C C19 XMF . . . D 4 7.701 21.13 5.981 1 14.38 ? C19 XMF 401 A 1 HETATM 20 N N20 XMF . . . D 4 5.359 20.737 4.951 1 20.12 ? N20 XMF 401 A 1 HETATM 21 O O21 XMF . . . D 4 10.266 22.862 5.981 1 9.52 ? O21 XMF 401 A 1 HETATM 22 C C22 XMF . . . D 4 4.188 19.875 4.568 1 23.54 ? C22 XMF 401 A 1 HETATM 23 C C23 XMF . . . D 4 -0.51 17.63 11.185 1 41.75 ? C23 XMF 401 A 1 HETATM 24 N N24 XMF . . . D 4 1.561 18.001 7.874 1 38.58 ? N24 XMF 401 A 1 HETATM 25 C C25 XMF . . . D 4 0.558 17.518 8.897 1 40.35 ? C25 XMF 401 A 1 HETATM 26 C C26 XMF . . . D 4 0.46 18.126 10.25 1 40.82 ? C26 XMF 401 A 1 HETATM 27 C C27 XMF . . . D 4 1.654 17.35 6.448 1 35.41 ? C27 XMF 401 A 1 HETATM 28 C C28 XMF . . . D 4 -0.385 16.407 8.614 1 41.72 ? C28 XMF 401 A 1 HETATM 29 C C29 XMF . . . D 4 2.526 19.173 8.219 1 36.73 ? C29 XMF 401 A 1 HETATM 30 C C30 XMF . . . D 4 3.065 19.482 5.611 1 25.84 ? C30 XMF 401 A 1 HETATM 31 C C31 XMF . . . D 4 1.796 20.375 5.276 1 23.67 ? C31 XMF 401 A 1 HETATM 32 O O32 XMF . . . D 4 1.98 21.786 5.349 1 22.83 ? O32 XMF 401 A 1 HETATM 33 C C33 XMF . . . D 4 2.727 17.941 5.434 1 28.1 ? C33 XMF 401 A 1 HETATM 34 N N34 XMF . . . D 4 -1.373 16.591 10.881 1 42.97 ? N34 XMF 401 A 1 HETATM 35 C C35 XMF . . . D 4 -1.316 15.995 9.631 1 43.33 ? C35 XMF 401 A 1 HETATM 36 C C36 XMF . . . D 4 3.562 19.614 7.118 1 30.12 ? C36 XMF 401 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 36 #