data_1IQK # _model_server_result.job_id MMELkZCjgMYz4dfX98m0Vg _model_server_result.datetime_utc '2024-12-21 14:50:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1iqk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 1IQK # _exptl.entry_id 1IQK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 499.025 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(6-CHLORO-2-NAPHTHALENYL)SULFONYL]-1-[[1-(4-PYRIDINYL)-4-PIPERIDINYL]METHYL]PIPERAZINONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1IQK _cell.length_a 71.96 _cell.length_b 78.92 _cell.length_c 56.14 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IQK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 12 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 27 A CYS 42 1_555 A SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 A SG CYS 108 A CYS 122 1_555 B SG CYS 89 L CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 A SG CYS 156 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf5 A SG CYS 181 A CYS 191 1_555 A SG CYS 209 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 46 L CYS 89 1_555 B SG CYS 57 L CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf7 B SG CYS 53 L CYS 96 1_555 B SG CYS 66 L CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf8 B SG CYS 68 L CYS 111 1_555 B SG CYS 81 L CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc1 A OD1 ASP 56 A ASP 70 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc2 A O ASN 58 A ASN 72 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? metalc ? metalc3 A OE1 GLU 63 A GLU 77 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.918 ? metalc ? metalc4 A OE1 GLU 66 A GLU 80 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? # _chem_comp.formula 'C25 H27 Cl N4 O3 S' _chem_comp.formula_weight 499.025 _chem_comp.id XMI _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(6-CHLORO-2-NAPHTHALENYL)SULFONYL]-1-[[1-(4-PYRIDINYL)-4-PIPERIDINYL]METHYL]PIPERAZINONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 O2 XMI doub 374 n n S1 N6 XMI sing 375 n n S1 O10 XMI doub 376 n n S1 C25 XMI sing 377 n n C3 O4 XMI doub 378 n n C3 C5 XMI sing 379 n n C3 N9 XMI sing 380 n n C5 N6 XMI sing 381 n n C5 H51 XMI sing 382 n n C5 H52 XMI sing 383 n n N6 C8 XMI sing 384 n n C7 C8 XMI sing 385 n n C7 N9 XMI sing 386 n n C7 H71 XMI sing 387 n n C7 H72 XMI sing 388 n n C8 H81 XMI sing 389 n n C8 H82 XMI sing 390 n n N9 C11 XMI sing 391 n n C11 C19 XMI sing 392 n n C11 H111 XMI sing 393 n n C11 H112 XMI sing 394 n n C12 C15 XMI doub 395 n y C12 N21 XMI sing 396 n y C12 H12 XMI sing 397 n n N13 C14 XMI sing 398 n n N13 C16 XMI sing 399 n n N13 C18 XMI sing 400 n n C14 C15 XMI sing 401 n y C14 C17 XMI doub 402 n y C15 H15 XMI sing 403 n n C16 C20 XMI sing 404 n n C16 H161 XMI sing 405 n n C16 H162 XMI sing 406 n n C17 C22 XMI sing 407 n y C17 H17 XMI sing 408 n n C18 C23 XMI sing 409 n n C18 H181 XMI sing 410 n n C18 H182 XMI sing 411 n n C19 C20 XMI sing 412 n n C19 C23 XMI sing 413 n n C19 H19 XMI sing 414 n n C20 H201 XMI sing 415 n n C20 H202 XMI sing 416 n n N21 C22 XMI doub 417 n y C22 H22 XMI sing 418 n n C23 H231 XMI sing 419 n n C23 H232 XMI sing 420 n n C24 C25 XMI sing 421 n y C24 C29 XMI doub 422 n y C24 H24 XMI sing 423 n n C25 C28 XMI doub 424 n y C26 C27 XMI doub 425 n y C26 C29 XMI sing 426 n y C26 C32 XMI sing 427 n y C27 C28 XMI sing 428 n y C27 H27 XMI sing 429 n n C28 H28 XMI sing 430 n n C29 C31 XMI sing 431 n y CL30 C34 XMI sing 432 n n C31 C33 XMI doub 433 n y C31 H31 XMI sing 434 n n C32 C34 XMI doub 435 n y C32 H32 XMI sing 436 n n C33 C34 XMI sing 437 n y C33 H33 XMI sing 438 n n # _atom_sites.entry_id 1IQK _atom_sites.fract_transf_matrix[1][1] 0.013897 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012671 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017813 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 301 301 CA CA . D 4 XMI A 1 401 401 XMI XMI . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 XMI . . . D 4 9.097 23.773 6.153 1 12.26 ? S1 XMI 401 A 1 HETATM 2 O O2 XMI . . . D 4 9.257 25.065 5.314 1 11.72 ? O2 XMI 401 A 1 HETATM 3 C C3 XMI . . . D 4 5.295 22.91 4.479 1 18.8 ? C3 XMI 401 A 1 HETATM 4 O O4 XMI . . . D 4 4.362 23.592 4.042 1 19.08 ? O4 XMI 401 A 1 HETATM 5 C C5 XMI . . . D 4 6.558 23.673 5.037 1 15.72 ? C5 XMI 401 A 1 HETATM 6 N N6 XMI . . . D 4 7.724 22.877 5.535 1 12.52 ? N6 XMI 401 A 1 HETATM 7 C C7 XMI . . . D 4 6.379 20.72 5.292 1 13.96 ? C7 XMI 401 A 1 HETATM 8 C C8 XMI . . . D 4 7.355 21.57 6.174 1 11.85 ? C8 XMI 401 A 1 HETATM 9 N N9 XMI . . . D 4 5.195 21.497 4.751 1 19.25 ? N9 XMI 401 A 1 HETATM 10 O O10 XMI . . . D 4 10.363 22.916 5.975 1 9.11 ? O10 XMI 401 A 1 HETATM 11 C C11 XMI . . . D 4 3.898 20.774 4.479 1 20.83 ? C11 XMI 401 A 1 HETATM 12 C C12 XMI . . . D 4 -0.945 15.934 9.328 1 31.28 ? C12 XMI 401 A 1 HETATM 13 N N13 XMI . . . D 4 1.331 18.565 7.554 1 25.36 ? N13 XMI 401 A 1 HETATM 14 C C14 XMI . . . D 4 0.45 17.886 8.561 1 26.78 ? C14 XMI 401 A 1 HETATM 15 C C15 XMI . . . D 4 -0.105 16.533 8.329 1 28.44 ? C15 XMI 401 A 1 HETATM 16 C C16 XMI . . . D 4 2.477 19.488 8.01 1 25.85 ? C16 XMI 401 A 1 HETATM 17 C C17 XMI . . . D 4 0.087 18.533 9.844 1 28.35 ? C17 XMI 401 A 1 HETATM 18 C C18 XMI . . . D 4 1.215 18.248 6.046 1 25.71 ? C18 XMI 401 A 1 HETATM 19 C C19 XMI . . . D 4 3.278 19.825 5.549 1 24.18 ? C19 XMI 401 A 1 HETATM 20 C C20 XMI . . . D 4 3.081 20.477 6.964 1 24.9 ? C20 XMI 401 A 1 HETATM 21 N N21 XMI . . . D 4 -1.262 16.567 10.517 1 34.24 ? N21 XMI 401 A 1 HETATM 22 C C22 XMI . . . D 4 -0.759 17.836 10.772 1 33.24 ? C22 XMI 401 A 1 HETATM 23 C C23 XMI . . . D 4 1.92 19.215 5.033 1 25.85 ? C23 XMI 401 A 1 HETATM 24 C C24 XMI . . . D 4 8.009 25.312 8.198 1 12.22 ? C24 XMI 401 A 1 HETATM 25 C C25 XMI . . . D 4 8.822 24.161 7.831 1 13.16 ? C25 XMI 401 A 1 HETATM 26 C C26 XMI . . . D 4 8.33 24.752 10.694 1 11.22 ? C26 XMI 401 A 1 HETATM 27 C C27 XMI . . . D 4 9.155 23.591 10.294 1 12.59 ? C27 XMI 401 A 1 HETATM 28 C C28 XMI . . . D 4 9.385 23.313 8.909 1 13.17 ? C28 XMI 401 A 1 HETATM 29 C C29 XMI . . . D 4 7.737 25.647 9.593 1 10.08 ? C29 XMI 401 A 1 HETATM 30 CL CL30 XMI . . . D 4 6.923 26.574 14.135 1 8.62 ? CL30 XMI 401 A 1 HETATM 31 C C31 XMI . . . D 4 6.912 26.804 9.993 1 10.77 ? C31 XMI 401 A 1 HETATM 32 C C32 XMI . . . D 4 8.051 25.081 12.088 1 11.62 ? C32 XMI 401 A 1 HETATM 33 C C33 XMI . . . D 4 6.676 27.074 11.381 1 11.94 ? C33 XMI 401 A 1 HETATM 34 C C34 XMI . . . D 4 7.239 26.22 12.446 1 11.91 ? C34 XMI 401 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 34 #