data_1IQM # _model_server_result.job_id ibSwOB13AK4Mh_1vPhjlyQ _model_server_result.datetime_utc '2024-12-21 14:56:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1iqm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 1IQM # _exptl.entry_id 1IQM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 461.02 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[[(1E)-2-(4-CHLOROPHENYL)ETHENYL]SULFONYL]-4-[[1-(4-PYRIDINYL)-4-PIPERIDINYL]METHYL]PIPERAZINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1IQM _cell.length_a 72.18 _cell.length_b 78.12 _cell.length_c 56.89 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IQM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 12 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 27 A CYS 42 1_555 A SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 108 A CYS 122 1_555 B SG CYS 89 L CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 156 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf5 A SG CYS 181 A CYS 191 1_555 A SG CYS 209 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 46 L CYS 89 1_555 B SG CYS 57 L CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 B SG CYS 53 L CYS 96 1_555 B SG CYS 66 L CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 B SG CYS 68 L CYS 111 1_555 B SG CYS 81 L CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc1 A OD1 ASP 56 A ASP 70 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? metalc ? metalc2 A O ASN 58 A ASN 72 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc3 A OE1 GLU 66 A GLU 80 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? metalc ? metalc4 A OE2 GLU 66 A GLU 80 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? # _chem_comp.formula 'C23 H29 Cl N4 O2 S' _chem_comp.formula_weight 461.02 _chem_comp.id XMK _chem_comp.mon_nstd_flag . _chem_comp.name 1-[[(1E)-2-(4-CHLOROPHENYL)ETHENYL]SULFONYL]-4-[[1-(4-PYRIDINYL)-4-PIPERIDINYL]METHYL]PIPERAZINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C9 XMK sing 376 n n C1 N28 XMK sing 377 n n C1 H11 XMK sing 378 n n C1 H12A XMK sing 379 n n C2 C5 XMK doub 380 n y C2 N11 XMK sing 381 n y C2 H2 XMK sing 382 n n N3 C4 XMK sing 383 n n N3 C6 XMK sing 384 n n N3 C8 XMK sing 385 n n C4 C5 XMK sing 386 n y C4 C7 XMK doub 387 n y C5 H5 XMK sing 388 n n C6 C10 XMK sing 389 n n C6 H61 XMK sing 390 n n C6 H62 XMK sing 391 n n C7 C12 XMK sing 392 n y C7 H7 XMK sing 393 n n C8 C13 XMK sing 394 n n C8 H81 XMK sing 395 n n C8 H82 XMK sing 396 n n C9 C10 XMK sing 397 n n C9 C13 XMK sing 398 n n C9 H9 XMK sing 399 n n C10 H101 XMK sing 400 n n C10 H102 XMK sing 401 n n N11 C12 XMK doub 402 n y C12 H12 XMK sing 403 n n C13 H131 XMK sing 404 n n C13 H132 XMK sing 405 n n C14 C15 XMK doub 406 e n C14 C18 XMK sing 407 n n C14 H14 XMK sing 408 n n C15 S17 XMK sing 409 n n C15 H15 XMK sing 410 n n C16 C18 XMK doub 411 n y C16 C27 XMK sing 412 n y C16 H16 XMK sing 413 n n S17 O20 XMK doub 414 n n S17 N23 XMK sing 415 n n S17 O31 XMK doub 416 n n C18 C24 XMK sing 417 n y CL19 C30 XMK sing 418 n n C21 C22 XMK sing 419 n n C21 N28 XMK sing 420 n n C21 H211 XMK sing 421 n n C21 H212 XMK sing 422 n n C22 N23 XMK sing 423 n n C22 H221 XMK sing 424 n n C22 H222 XMK sing 425 n n N23 C26 XMK sing 426 n n C24 C29 XMK doub 427 n y C24 H24 XMK sing 428 n n C25 C26 XMK sing 429 n n C25 N28 XMK sing 430 n n C25 H251 XMK sing 431 n n C25 H252 XMK sing 432 n n C26 H261 XMK sing 433 n n C26 H262 XMK sing 434 n n C27 C30 XMK doub 435 n y C27 H27 XMK sing 436 n n C29 C30 XMK sing 437 n y C29 H29 XMK sing 438 n n # _atom_sites.entry_id 1IQM _atom_sites.fract_transf_matrix[1][1] 0.013854 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012801 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017578 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 301 301 CA CA . D 4 XMK A 1 401 401 XMK XMK . E 5 HOH A 1 501 501 HOH HOH . E 5 HOH A 2 502 502 HOH HOH . E 5 HOH A 3 503 503 HOH HOH . E 5 HOH A 4 504 504 HOH HOH . E 5 HOH A 5 505 505 HOH HOH . E 5 HOH A 6 507 507 HOH HOH . E 5 HOH A 7 508 508 HOH HOH . E 5 HOH A 8 511 511 HOH HOH . E 5 HOH A 9 512 512 HOH HOH . E 5 HOH A 10 514 514 HOH HOH . E 5 HOH A 11 515 515 HOH HOH . E 5 HOH A 12 516 516 HOH HOH . E 5 HOH A 13 519 519 HOH HOH . E 5 HOH A 14 520 520 HOH HOH . E 5 HOH A 15 521 521 HOH HOH . E 5 HOH A 16 522 522 HOH HOH . E 5 HOH A 17 523 523 HOH HOH . E 5 HOH A 18 524 524 HOH HOH . E 5 HOH A 19 525 525 HOH HOH . E 5 HOH A 20 526 526 HOH HOH . E 5 HOH A 21 527 527 HOH HOH . E 5 HOH A 22 528 528 HOH HOH . E 5 HOH A 23 530 530 HOH HOH . E 5 HOH A 24 531 531 HOH HOH . E 5 HOH A 25 532 532 HOH HOH . E 5 HOH A 26 533 533 HOH HOH . E 5 HOH A 27 534 534 HOH HOH . E 5 HOH A 28 535 535 HOH HOH . E 5 HOH A 29 536 536 HOH HOH . E 5 HOH A 30 537 537 HOH HOH . E 5 HOH A 31 538 538 HOH HOH . E 5 HOH A 32 539 539 HOH HOH . E 5 HOH A 33 540 540 HOH HOH . F 5 HOH L 1 506 506 HOH HOH . F 5 HOH L 2 509 509 HOH HOH . F 5 HOH L 3 510 510 HOH HOH . F 5 HOH L 4 513 513 HOH HOH . F 5 HOH L 5 517 517 HOH HOH . F 5 HOH L 6 518 518 HOH HOH . F 5 HOH L 7 529 529 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 XMK . . . D 4 4.735 19.385 5.422 1 46.47 ? C1 XMK 401 A 1 HETATM 2 C C2 XMK . . . D 4 -0.767 17.623 11.509 1 54.83 ? C2 XMK 401 A 1 HETATM 3 N N3 XMK . . . D 4 1.13 18.32 8.102 1 52.83 ? N3 XMK 401 A 1 HETATM 4 C C4 XMK . . . D 4 0.192 17.719 9.147 1 52.48 ? C4 XMK 401 A 1 HETATM 5 C C5 XMK . . . D 4 0.147 18.229 10.555 1 53.27 ? C5 XMK 401 A 1 HETATM 6 C C6 XMK . . . D 4 1.181 17.801 6.638 1 52.65 ? C6 XMK 401 A 1 HETATM 7 C C7 XMK . . . D 4 -0.739 16.589 8.829 1 54.62 ? C7 XMK 401 A 1 HETATM 8 C C8 XMK . . . D 4 2.087 19.497 8.442 1 51.37 ? C8 XMK 401 A 1 HETATM 9 C C9 XMK . . . D 4 3.334 19.249 6.126 1 49.32 ? C9 XMK 401 A 1 HETATM 10 C C10 XMK . . . D 4 2.585 17.872 5.908 1 50.71 ? C10 XMK 401 A 1 HETATM 11 N N11 XMK . . . D 4 -1.618 16.57 11.164 1 56.06 ? N11 XMK 401 A 1 HETATM 12 C C12 XMK . . . D 4 -1.613 16.06 9.866 1 56.1 ? C12 XMK 401 A 1 HETATM 13 C C13 XMK . . . D 4 3.449 19.598 7.661 1 50.57 ? C13 XMK 401 A 1 HETATM 14 C C14 XMK . . . D 4 8.371 25.581 7.919 1 29.81 ? C14 XMK 401 A 1 HETATM 15 C C15 XMK . . . D 4 7.902 24.542 7.168 1 34.38 ? C15 XMK 401 A 1 HETATM 16 C C16 XMK . . . D 4 8.516 24.777 10.452 1 22.95 ? C16 XMK 401 A 1 HETATM 17 S S17 XMK . . . D 4 8.23 24.334 5.438 1 37.67 ? S17 XMK 401 A 1 HETATM 18 C C18 XMK . . . D 4 8.099 25.765 9.417 1 26.54 ? C18 XMK 401 A 1 HETATM 19 CL CL19 XMK . . . D 4 7.202 26.474 14.01 1 27.18 ? CL19 XMK 401 A 1 HETATM 20 O O20 XMK . . . D 4 7.819 25.582 4.64 1 34.63 ? O20 XMK 401 A 1 HETATM 21 C C21 XMK . . . D 4 4.999 21.788 4.708 1 41.96 ? C21 XMK 401 A 1 HETATM 22 C C22 XMK . . . D 4 5.827 23.099 4.869 1 40.29 ? C22 XMK 401 A 1 HETATM 23 N N23 XMK . . . D 4 7.343 22.938 4.889 1 37.66 ? N23 XMK 401 A 1 HETATM 24 C C24 XMK . . . D 4 7.392 26.974 9.877 1 24.39 ? C24 XMK 401 A 1 HETATM 25 C C25 XMK . . . D 4 6.98 20.382 5.311 1 40.18 ? C25 XMK 401 A 1 HETATM 26 C C26 XMK . . . D 4 7.888 21.639 5.444 1 36.83 ? C26 XMK 401 A 1 HETATM 27 C C27 XMK . . . D 4 8.233 25.004 11.858 1 22.27 ? C27 XMK 401 A 1 HETATM 28 N N28 XMK . . . D 4 5.526 20.648 5.551 1 43.39 ? N28 XMK 401 A 1 HETATM 29 C C29 XMK . . . D 4 7.111 27.196 11.3 1 25.53 ? C29 XMK 401 A 1 HETATM 30 C C30 XMK . . . D 4 7.528 26.213 12.311 1 21.76 ? C30 XMK 401 A 1 HETATM 31 O O31 XMK . . . D 4 9.722 24.078 5.197 1 37.56 ? O31 XMK 401 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #