data_1IRA # _model_server_result.job_id ziEvoVtig_ekeHqGz3JbyQ _model_server_result.datetime_utc '2024-10-24 04:25:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ira # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 1IRA # _exptl.entry_id 1IRA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1IRA _cell.length_a 47.2 _cell.length_b 84.6 _cell.length_c 140.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IRA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 69 X CYS 69 1_555 A SG CYS 116 X CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 6 Y CYS 3 1_555 B SG CYS 87 Y CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 B SG CYS 27 Y CYS 24 1_555 B SG CYS 79 Y CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 104 Y CYS 101 1_555 B SG CYS 147 Y CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 B SG CYS 125 Y CYS 122 1_555 B SG CYS 179 Y CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 B SG CYS 231 Y CYS 228 1_555 B SG CYS 295 Y CYS 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? covale ? covale1 B ND2 ASN 176 Y ASN 173 1_555 C C1 NAG . Y NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale2 B ND2 ASN 216 Y ASN 213 1_555 D C1 NAG . Y NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale3 B ND2 ASN 232 Y ASN 229 1_555 E C1 NAG . Y NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale4 B ND2 ASN 246 Y ASN 243 1_555 F C1 NAG . Y NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1IRA _atom_sites.fract_transf_matrix[1][1] 0.021186 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007133 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG Y 1 401 401 NAG NAG . D 3 NAG Y 1 402 402 NAG NAG . E 3 NAG Y 1 403 403 NAG NAG . F 3 NAG Y 1 404 404 NAG NAG . G 4 HOH X 1 153 2 HOH HOH . G 4 HOH X 2 154 6 HOH HOH . G 4 HOH X 3 155 8 HOH HOH . G 4 HOH X 4 156 9 HOH HOH . G 4 HOH X 5 157 10 HOH HOH . G 4 HOH X 6 158 12 HOH HOH . G 4 HOH X 7 159 13 HOH HOH . G 4 HOH X 8 160 14 HOH HOH . G 4 HOH X 9 161 15 HOH HOH . G 4 HOH X 10 162 18 HOH HOH . G 4 HOH X 11 163 19 HOH HOH . G 4 HOH X 12 164 24 HOH HOH . G 4 HOH X 13 165 27 HOH HOH . G 4 HOH X 14 166 29 HOH HOH . G 4 HOH X 15 167 32 HOH HOH . G 4 HOH X 16 168 35 HOH HOH . G 4 HOH X 17 169 36 HOH HOH . G 4 HOH X 18 170 37 HOH HOH . G 4 HOH X 19 171 38 HOH HOH . G 4 HOH X 20 172 39 HOH HOH . G 4 HOH X 21 173 40 HOH HOH . G 4 HOH X 22 174 41 HOH HOH . G 4 HOH X 23 175 43 HOH HOH . G 4 HOH X 24 176 50 HOH HOH . G 4 HOH X 25 177 51 HOH HOH . G 4 HOH X 26 178 52 HOH HOH . G 4 HOH X 27 179 68 HOH HOH . G 4 HOH X 28 180 74 HOH HOH . G 4 HOH X 29 181 75 HOH HOH . G 4 HOH X 30 182 78 HOH HOH . G 4 HOH X 31 183 79 HOH HOH . G 4 HOH X 32 184 84 HOH HOH . H 4 HOH Y 1 405 1 HOH HOH . H 4 HOH Y 2 406 3 HOH HOH . H 4 HOH Y 3 407 4 HOH HOH . H 4 HOH Y 4 408 5 HOH HOH . H 4 HOH Y 5 409 7 HOH HOH . H 4 HOH Y 6 410 11 HOH HOH . H 4 HOH Y 7 411 16 HOH HOH . H 4 HOH Y 8 412 17 HOH HOH . H 4 HOH Y 9 413 20 HOH HOH . H 4 HOH Y 10 414 21 HOH HOH . H 4 HOH Y 11 415 22 HOH HOH . H 4 HOH Y 12 416 23 HOH HOH . H 4 HOH Y 13 417 25 HOH HOH . H 4 HOH Y 14 418 26 HOH HOH . H 4 HOH Y 15 419 28 HOH HOH . H 4 HOH Y 16 420 30 HOH HOH . H 4 HOH Y 17 421 31 HOH HOH . H 4 HOH Y 18 422 33 HOH HOH . H 4 HOH Y 19 423 34 HOH HOH . H 4 HOH Y 20 424 42 HOH HOH . H 4 HOH Y 21 425 44 HOH HOH . H 4 HOH Y 22 426 45 HOH HOH . H 4 HOH Y 23 427 46 HOH HOH . H 4 HOH Y 24 428 47 HOH HOH . H 4 HOH Y 25 429 48 HOH HOH . H 4 HOH Y 26 430 49 HOH HOH . H 4 HOH Y 27 431 53 HOH HOH . H 4 HOH Y 28 432 54 HOH HOH . H 4 HOH Y 29 433 55 HOH HOH . H 4 HOH Y 30 434 56 HOH HOH . H 4 HOH Y 31 435 57 HOH HOH . H 4 HOH Y 32 436 58 HOH HOH . H 4 HOH Y 33 437 59 HOH HOH . H 4 HOH Y 34 438 60 HOH HOH . H 4 HOH Y 35 439 61 HOH HOH . H 4 HOH Y 36 440 62 HOH HOH . H 4 HOH Y 37 441 63 HOH HOH . H 4 HOH Y 38 442 64 HOH HOH . H 4 HOH Y 39 443 65 HOH HOH . H 4 HOH Y 40 444 66 HOH HOH . H 4 HOH Y 41 445 67 HOH HOH . H 4 HOH Y 42 446 69 HOH HOH . H 4 HOH Y 43 447 70 HOH HOH . H 4 HOH Y 44 448 71 HOH HOH . H 4 HOH Y 45 449 72 HOH HOH . H 4 HOH Y 46 450 73 HOH HOH . H 4 HOH Y 47 451 76 HOH HOH . H 4 HOH Y 48 452 77 HOH HOH . H 4 HOH Y 49 453 80 HOH HOH . H 4 HOH Y 50 454 81 HOH HOH . H 4 HOH Y 51 455 82 HOH HOH . H 4 HOH Y 52 456 83 HOH HOH . H 4 HOH Y 53 457 85 HOH HOH . H 4 HOH Y 54 458 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 51.853 4.487 55.857 1 38.11 ? C1 NAG 401 Y 1 HETATM 2 C C2 NAG . . . C 3 52.846 5.432 56.54 1 48.61 ? C2 NAG 401 Y 1 HETATM 3 C C3 NAG . . . C 3 53.681 6.177 55.495 1 54.01 ? C3 NAG 401 Y 1 HETATM 4 C C4 NAG . . . C 3 54.315 5.197 54.518 1 51.02 ? C4 NAG 401 Y 1 HETATM 5 C C5 NAG . . . C 3 53.224 4.331 53.901 1 57.34 ? C5 NAG 401 Y 1 HETATM 6 C C6 NAG . . . C 3 53.761 3.298 52.927 1 59.49 ? C6 NAG 401 Y 1 HETATM 7 C C7 NAG . . . C 3 52.565 6.759 58.543 1 52.37 ? C7 NAG 401 Y 1 HETATM 8 C C8 NAG . . . C 3 51.728 7.784 59.292 1 43.5 ? C8 NAG 401 Y 1 HETATM 9 N N2 NAG . . . C 3 52.115 6.395 57.346 1 51.45 ? N2 NAG 401 Y 1 HETATM 10 O O3 NAG . . . C 3 54.702 6.928 56.134 1 64.38 ? O3 NAG 401 Y 1 HETATM 11 O O4 NAG . . . C 3 55.005 5.915 53.505 1 49.91 ? O4 NAG 401 Y 1 HETATM 12 O O5 NAG . . . C 3 52.53 3.617 54.941 1 62.25 ? O5 NAG 401 Y 1 HETATM 13 O O6 NAG . . . C 3 52.899 2.17 52.85 1 70.81 ? O6 NAG 401 Y 1 HETATM 14 O O7 NAG . . . C 3 53.587 6.288 59.038 1 55.95 ? O7 NAG 401 Y 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #