data_1IRV
#
_model_server_result.job_id            QnK5l-WNZHpLPN_4UHDeTw 
_model_server_result.datetime_utc      '2024-10-14 07:27:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1irv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":104}' 
#
_entry.id    1IRV 
#
_exptl.entry_id    1IRV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1IRV 
_cell.length_a            36.55 
_cell.length_b            36.55 
_cell.length_c            138.59 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1IRV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 19 A CYS 14 1_555 C CAB HEM . A HEM 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.781 ? 
covale ? covale2 A SG CYS 22 A CYS 17 1_555 C CAC HEM . A HEM 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? 
covale ? covale3 A C PRO 76 A PRO 71 1_555 A N M3L 77 A M3L 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale4 A C M3L 77 A M3L 72 1_555 A N LYS 78 A LYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.282 ? 
metalc ? metalc1 A NE2 HIS 23 A HIS 18 1_555 C FE HEM . A HEM 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.863 ? 
metalc ? metalc2 A SD MET 85 A MET 80 1_555 C FE HEM . A HEM 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
_atom_sites.entry_id                     1IRV 
_atom_sites.fract_transf_matrix[1][1]    0.02736 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02736 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007216 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 117 117 SO4 SO4 . 
C 3 HEM A 1 104 104 HEM HEM . 
D 4 HOH A 1 107 107 HOH HOH . 
D 4 HOH A 2 110 110 HOH HOH . 
D 4 HOH A 3 121 121 HOH HOH . 
D 4 HOH A 4 129 129 HOH HOH . 
D 4 HOH A 5 133 133 HOH HOH . 
D 4 HOH A 6 140 140 HOH HOH . 
D 4 HOH A 7 154 154 HOH HOH . 
D 4 HOH A 8 155 155 HOH HOH . 
D 4 HOH A 9 158 158 HOH HOH . 
D 4 HOH A 10 166 166 HOH HOH . 
D 4 HOH A 11 168 168 HOH HOH . 
D 4 HOH A 12 172 172 HOH HOH . 
D 4 HOH A 13 189 189 HOH HOH . 
D 4 HOH A 14 191 191 HOH HOH . 
D 4 HOH A 15 204 204 HOH HOH . 
D 4 HOH A 16 208 208 HOH HOH . 
D 4 HOH A 17 214 214 HOH HOH . 
D 4 HOH A 18 215 215 HOH HOH . 
D 4 HOH A 19 219 219 HOH HOH . 
D 4 HOH A 20 300 300 HOH HOH . 
D 4 HOH A 21 301 301 HOH HOH . 
D 4 HOH A 22 302 302 HOH HOH . 
D 4 HOH A 23 303 303 HOH HOH . 
D 4 HOH A 24 304 304 HOH HOH . 
D 4 HOH A 25 305 305 HOH HOH . 
D 4 HOH A 26 306 306 HOH HOH . 
D 4 HOH A 27 307 307 HOH HOH . 
D 4 HOH A 28 308 308 HOH HOH . 
D 4 HOH A 29 309 309 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 3 4.85 18.769 14.368 1 8.74 ? CHA HEM 104 A 1 
HETATM 2 C CHB HEM . . . C 3 3.882 20.808 10.062 1 9.87 ? CHB HEM 104 A 1 
HETATM 3 C CHC HEM . . . C 3 -0.168 22.587 12.065 1 8.94 ? CHC HEM 104 A 1 
HETATM 4 C CHD HEM . . . C 3 1.762 21.769 16.506 1 12.15 ? CHD HEM 104 A 1 
HETATM 5 C C1A HEM . . . C 3 4.86 19.036 13.019 1 6.87 ? C1A HEM 104 A 1 
HETATM 6 C C2A HEM . . . C 3 5.625 18.321 12.01 1 6.3 ? C2A HEM 104 A 1 
HETATM 7 C C3A HEM . . . C 3 5.277 18.872 10.796 1 8.11 ? C3A HEM 104 A 1 
HETATM 8 C C4A HEM . . . C 3 4.347 19.933 11.026 1 8.16 ? C4A HEM 104 A 1 
HETATM 9 C CMA HEM . . . C 3 5.786 18.433 9.411 1 5.64 ? CMA HEM 104 A 1 
HETATM 10 C CAA HEM . . . C 3 6.54 17.121 12.266 1 4 ? CAA HEM 104 A 1 
HETATM 11 C CBA HEM . . . C 3 7.86 17.519 12.807 1 4.48 ? CBA HEM 104 A 1 
HETATM 12 C CGA HEM . . . C 3 9.214 17 12.701 1 6.63 ? CGA HEM 104 A 1 
HETATM 13 O O1A HEM . . . C 3 10.144 17.894 12.983 1 11.55 ? O1A HEM 104 A 1 
HETATM 14 O O2A HEM . . . C 3 9.599 15.813 12.455 1 7.25 ? O2A HEM 104 A 1 
HETATM 15 C C1B HEM . . . C 3 2.708 21.523 10.27 1 10.85 ? C1B HEM 104 A 1 
HETATM 16 C C2B HEM . . . C 3 1.993 22.261 9.217 1 10.43 ? C2B HEM 104 A 1 
HETATM 17 C C3B HEM . . . C 3 0.845 22.659 9.738 1 8.71 ? C3B HEM 104 A 1 
HETATM 18 C C4B HEM . . . C 3 0.844 22.314 11.156 1 8.58 ? C4B HEM 104 A 1 
HETATM 19 C CMB HEM . . . C 3 2.534 22.356 7.766 1 11.7 ? CMB HEM 104 A 1 
HETATM 20 C CAB HEM . . . C 3 -0.262 23.472 9.065 1 8.63 ? CAB HEM 104 A 1 
HETATM 21 C CBB HEM . . . C 3 -0.891 22.803 7.834 1 10.88 ? CBB HEM 104 A 1 
HETATM 22 C C1C HEM . . . C 3 0.066 22.575 13.461 1 11.33 ? C1C HEM 104 A 1 
HETATM 23 C C2C HEM . . . C 3 -0.648 23.453 14.403 1 12.13 ? C2C HEM 104 A 1 
HETATM 24 C C3C HEM . . . C 3 -0.103 23.284 15.623 1 10.24 ? C3C HEM 104 A 1 
HETATM 25 C C4C HEM . . . C 3 0.966 22.315 15.469 1 11.28 ? C4C HEM 104 A 1 
HETATM 26 C CMC HEM . . . C 3 -1.797 24.396 13.922 1 12.33 ? CMC HEM 104 A 1 
HETATM 27 C CAC HEM . . . C 3 -0.511 23.93 16.967 1 4 ? CAC HEM 104 A 1 
HETATM 28 C CBC HEM . . . C 3 -1.977 24.147 17.291 1 4 ? CBC HEM 104 A 1 
HETATM 29 C C1D HEM . . . C 3 2.737 20.779 16.367 1 10.16 ? C1D HEM 104 A 1 
HETATM 30 C C2D HEM . . . C 3 3.343 19.915 17.406 1 10.33 ? C2D HEM 104 A 1 
HETATM 31 C C3D HEM . . . C 3 4.189 19.089 16.812 1 7.93 ? C3D HEM 104 A 1 
HETATM 32 C C4D HEM . . . C 3 4.079 19.329 15.371 1 9.29 ? C4D HEM 104 A 1 
HETATM 33 C CMD HEM . . . C 3 2.997 20.083 18.9 1 9.59 ? CMD HEM 104 A 1 
HETATM 34 C CAD HEM . . . C 3 5.118 18.031 17.45 1 7.18 ? CAD HEM 104 A 1 
HETATM 35 C CBD HEM . . . C 3 4.534 16.679 17.633 1 6.12 ? CBD HEM 104 A 1 
HETATM 36 C CGD HEM . . . C 3 5.148 15.546 18.423 1 8.33 ? CGD HEM 104 A 1 
HETATM 37 O O1D HEM . . . C 3 6.236 15.632 19.059 1 4.79 ? O1D HEM 104 A 1 
HETATM 38 O O2D HEM . . . C 3 4.391 14.506 18.502 1 6.64 ? O2D HEM 104 A 1 
HETATM 39 N NA HEM . . . C 3 4.164 20.079 12.437 1 7.35 ? NA HEM 104 A 1 
HETATM 40 N NB HEM . . . C 3 1.99 21.649 11.434 1 7.49 ? NB HEM 104 A 1 
HETATM 41 N NC HEM . . . C 3 1.115 22.009 14.122 1 9.44 ? NC HEM 104 A 1 
HETATM 42 N ND HEM . . . C 3 3.204 20.365 15.137 1 7.93 ? ND HEM 104 A 1 
HETATM 43 FE FE HEM . . . C 3 2.735 21.173 13.306 1 8.27 ? FE HEM 104 A 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           441 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#