data_1IRW # _model_server_result.job_id gTBfSeA5CzGWGbUT_o7PCw _model_server_result.datetime_utc '2024-11-24 08:39:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1irw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":104}' # _entry.id 1IRW # _exptl.entry_id 1IRW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1IRW _cell.length_a 36.52 _cell.length_b 36.52 _cell.length_c 137.39 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IRW _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 19 A CYS 14 1_555 C CAB HEM . A HEM 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.744 ? covale ? covale2 A SG CYS 22 A CYS 17 1_555 C CAC HEM . A HEM 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.833 ? covale ? covale3 A C PRO 76 A PRO 71 1_555 A N M3L 77 A M3L 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C M3L 77 A M3L 72 1_555 A N LYS 78 A LYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.284 ? metalc ? metalc1 A NE2 HIS 23 A HIS 18 1_555 C FE HEM . A HEM 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc2 A SD MET 85 A MET 80 1_555 C FE HEM . A HEM 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 1IRW _atom_sites.fract_transf_matrix[1][1] 0.027382 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027382 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007279 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 117 117 SO4 SO4 . C 3 HEM A 1 104 104 HEM HEM . D 4 HOH A 1 106 106 HOH HOH . D 4 HOH A 2 107 107 HOH HOH . D 4 HOH A 3 110 110 HOH HOH . D 4 HOH A 4 111 111 HOH HOH . D 4 HOH A 5 112 112 HOH HOH . D 4 HOH A 6 113 113 HOH HOH . D 4 HOH A 7 119 119 HOH HOH . D 4 HOH A 8 121 121 HOH HOH . D 4 HOH A 9 122 122 HOH HOH . D 4 HOH A 10 128 128 HOH HOH . D 4 HOH A 11 129 129 HOH HOH . D 4 HOH A 12 131 131 HOH HOH . D 4 HOH A 13 133 133 HOH HOH . D 4 HOH A 14 140 140 HOH HOH . D 4 HOH A 15 141 141 HOH HOH . D 4 HOH A 16 144 144 HOH HOH . D 4 HOH A 17 148 148 HOH HOH . D 4 HOH A 18 149 149 HOH HOH . D 4 HOH A 19 150 150 HOH HOH . D 4 HOH A 20 153 153 HOH HOH . D 4 HOH A 21 156 156 HOH HOH . D 4 HOH A 22 158 158 HOH HOH . D 4 HOH A 23 160 160 HOH HOH . D 4 HOH A 24 163 163 HOH HOH . D 4 HOH A 25 164 164 HOH HOH . D 4 HOH A 26 166 166 HOH HOH . D 4 HOH A 27 167 167 HOH HOH . D 4 HOH A 28 168 168 HOH HOH . D 4 HOH A 29 181 181 HOH HOH . D 4 HOH A 30 182 182 HOH HOH . D 4 HOH A 31 183 183 HOH HOH . D 4 HOH A 32 195 195 HOH HOH . D 4 HOH A 33 197 197 HOH HOH . D 4 HOH A 34 204 204 HOH HOH . D 4 HOH A 35 209 209 HOH HOH . D 4 HOH A 36 214 214 HOH HOH . D 4 HOH A 37 300 300 HOH HOH . D 4 HOH A 38 301 301 HOH HOH . D 4 HOH A 39 302 302 HOH HOH . D 4 HOH A 40 303 303 HOH HOH . D 4 HOH A 41 304 304 HOH HOH . D 4 HOH A 42 305 305 HOH HOH . D 4 HOH A 43 306 306 HOH HOH . D 4 HOH A 44 307 307 HOH HOH . D 4 HOH A 45 308 308 HOH HOH . D 4 HOH A 46 309 309 HOH HOH . D 4 HOH A 47 310 310 HOH HOH . D 4 HOH A 48 311 311 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 3 5.062 18.671 14.262 1 11.19 ? CHA HEM 104 A 1 HETATM 2 C CHB HEM . . . C 3 4.009 20.799 10.002 1 9.38 ? CHB HEM 104 A 1 HETATM 3 C CHC HEM . . . C 3 0.159 22.792 12.124 1 8.6 ? CHC HEM 104 A 1 HETATM 4 C CHD HEM . . . C 3 2.27 21.957 16.371 1 11.57 ? CHD HEM 104 A 1 HETATM 5 C C1A HEM . . . C 3 5.112 19.022 12.914 1 10.99 ? C1A HEM 104 A 1 HETATM 6 C C2A HEM . . . C 3 5.865 18.365 11.867 1 10.16 ? C2A HEM 104 A 1 HETATM 7 C C3A HEM . . . C 3 5.523 18.897 10.688 1 10.27 ? C3A HEM 104 A 1 HETATM 8 C C4A HEM . . . C 3 4.543 19.941 10.943 1 10.18 ? C4A HEM 104 A 1 HETATM 9 C CMA HEM . . . C 3 5.985 18.597 9.234 1 5.44 ? CMA HEM 104 A 1 HETATM 10 C CAA HEM . . . C 3 6.823 17.193 12.131 1 11.19 ? CAA HEM 104 A 1 HETATM 11 C CBA HEM . . . C 3 8.261 17.658 11.846 1 14.1 ? CBA HEM 104 A 1 HETATM 12 C CGA HEM . . . C 3 9.431 16.944 12.448 1 13.04 ? CGA HEM 104 A 1 HETATM 13 O O1A HEM . . . C 3 10.36 17.648 12.911 1 13.01 ? O1A HEM 104 A 1 HETATM 14 O O2A HEM . . . C 3 9.45 15.698 12.381 1 14.21 ? O2A HEM 104 A 1 HETATM 15 C C1B HEM . . . C 3 2.872 21.549 10.224 1 10.45 ? C1B HEM 104 A 1 HETATM 16 C C2B HEM . . . C 3 2.134 22.295 9.188 1 10.56 ? C2B HEM 104 A 1 HETATM 17 C C3B HEM . . . C 3 1.066 22.844 9.772 1 9.68 ? C3B HEM 104 A 1 HETATM 18 C C4B HEM . . . C 3 1.113 22.453 11.184 1 7.89 ? C4B HEM 104 A 1 HETATM 19 C CMB HEM . . . C 3 2.678 22.426 7.757 1 11.1 ? CMB HEM 104 A 1 HETATM 20 C CAB HEM . . . C 3 -0.065 23.729 9.212 1 9.97 ? CAB HEM 104 A 1 HETATM 21 C CBB HEM . . . C 3 -1.246 23.088 8.467 1 12.9 ? CBB HEM 104 A 1 HETATM 22 C C1C HEM . . . C 3 0.456 22.853 13.468 1 8.81 ? C1C HEM 104 A 1 HETATM 23 C C2C HEM . . . C 3 -0.279 23.562 14.457 1 9.27 ? C2C HEM 104 A 1 HETATM 24 C C3C HEM . . . C 3 0.239 23.275 15.664 1 8.34 ? C3C HEM 104 A 1 HETATM 25 C C4C HEM . . . C 3 1.414 22.449 15.418 1 9.42 ? C4C HEM 104 A 1 HETATM 26 C CMC HEM . . . C 3 -1.553 24.415 14.096 1 8.78 ? CMC HEM 104 A 1 HETATM 27 C CAC HEM . . . C 3 -0.096 23.837 17.072 1 6.53 ? CAC HEM 104 A 1 HETATM 28 C CBC HEM . . . C 3 -1.478 23.82 17.683 1 5.97 ? CBC HEM 104 A 1 HETATM 29 C C1D HEM . . . C 3 3.122 20.881 16.239 1 11.81 ? C1D HEM 104 A 1 HETATM 30 C C2D HEM . . . C 3 3.687 20.067 17.291 1 12.06 ? C2D HEM 104 A 1 HETATM 31 C C3D HEM . . . C 3 4.5 19.147 16.704 1 12.02 ? C3D HEM 104 A 1 HETATM 32 C C4D HEM . . . C 3 4.397 19.352 15.258 1 12.31 ? C4D HEM 104 A 1 HETATM 33 C CMD HEM . . . C 3 3.428 20.167 18.806 1 11.44 ? CMD HEM 104 A 1 HETATM 34 C CAD HEM . . . C 3 5.269 18.005 17.373 1 10.03 ? CAD HEM 104 A 1 HETATM 35 C CBD HEM . . . C 3 4.728 16.61 17.531 1 8.07 ? CBD HEM 104 A 1 HETATM 36 C CGD HEM . . . C 3 5.415 15.644 18.453 1 9.92 ? CGD HEM 104 A 1 HETATM 37 O O1D HEM . . . C 3 6.554 15.919 18.982 1 10.05 ? O1D HEM 104 A 1 HETATM 38 O O2D HEM . . . C 3 4.83 14.551 18.713 1 8.28 ? O2D HEM 104 A 1 HETATM 39 N NA HEM . . . C 3 4.293 19.966 12.329 1 10.29 ? NA HEM 104 A 1 HETATM 40 N NB HEM . . . C 3 2.159 21.623 11.394 1 6.82 ? NB HEM 104 A 1 HETATM 41 N NC HEM . . . C 3 1.505 22.191 14.078 1 8.37 ? NC HEM 104 A 1 HETATM 42 N ND HEM . . . C 3 3.55 20.443 15.021 1 10.73 ? ND HEM 104 A 1 HETATM 43 FE FE HEM . . . C 3 2.811 20.966 13.176 1 8.75 ? FE HEM 104 A 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 448 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #