data_1IT1 # _model_server_result.job_id yz_mJRcpBwKTdDxn8jCYrw _model_server_result.datetime_utc '2024-11-22 09:50:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1it1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 1IT1 # _exptl.entry_id 1IT1 _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 30 A CYS 30 1_555 B CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? covale ? covale2 A SG CYS 33 A CYS 33 1_555 B CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.812 ? covale ? covale3 A SG CYS 46 A CYS 46 1_555 C CAB HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? covale ? covale4 A SG CYS 51 A CYS 51 1_555 C CAC HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.809 ? covale ? covale5 A SG CYS 79 A CYS 79 1_555 D CAB HEC . A HEC 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? covale ? covale6 A SG CYS 82 A CYS 82 1_555 D CAC HEC . A HEC 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? covale ? covale7 A SG CYS 100 A CYS 100 1_555 E CAB HEC . A HEC 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? covale ? covale8 A SG CYS 105 A CYS 105 1_555 E CAC HEC . A HEC 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? metalc ? metalc1 A NE2 HIS 22 A HIS 22 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc2 A NE2 HIS 25 A HIS 25 1_555 D FE HEC . A HEC 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc3 A NE2 HIS 34 A HIS 34 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc4 A NE2 HIS 35 A HIS 35 1_555 C FE HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc5 A NE2 HIS 52 A HIS 52 1_555 C FE HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc6 A NE2 HIS 70 A HIS 70 1_555 E FE HEC . A HEC 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc7 A NE2 HIS 83 A HIS 83 1_555 D FE HEC . A HEC 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc8 A NE2 HIS 106 A HIS 106 1_555 E FE HEC . A HEC 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 103 n n FE NB HEC sing 104 n n FE NC HEC sing 105 n n FE ND HEC sing 106 n n CHA C1A HEC doub 107 n n CHA C4D HEC sing 108 n n CHA HHA HEC sing 109 n n CHB C4A HEC doub 110 n n CHB C1B HEC sing 111 n n CHB HHB HEC sing 112 n n CHC C4B HEC doub 113 n n CHC C1C HEC sing 114 n n CHC HHC HEC sing 115 n n CHD C4C HEC doub 116 n n CHD C1D HEC sing 117 n n CHD HHD HEC sing 118 n n NA C1A HEC sing 119 n y NA C4A HEC sing 120 n y C1A C2A HEC sing 121 n y C2A C3A HEC doub 122 n y C2A CAA HEC sing 123 n n C3A C4A HEC sing 124 n y C3A CMA HEC sing 125 n n CMA HMA1 HEC sing 126 n n CMA HMA2 HEC sing 127 n n CMA HMA3 HEC sing 128 n n CAA CBA HEC sing 129 n n CAA HAA1 HEC sing 130 n n CAA HAA2 HEC sing 131 n n CBA CGA HEC sing 132 n n CBA HBA1 HEC sing 133 n n CBA HBA2 HEC sing 134 n n CGA O1A HEC doub 135 n n CGA O2A HEC sing 136 n n O2A H2A HEC sing 137 n n NB C1B HEC sing 138 n y NB C4B HEC sing 139 n y C1B C2B HEC doub 140 n y C2B C3B HEC sing 141 n y C2B CMB HEC sing 142 n n C3B C4B HEC sing 143 n y C3B CAB HEC doub 144 e n CMB HMB1 HEC sing 145 n n CMB HMB2 HEC sing 146 n n CMB HMB3 HEC sing 147 n n CAB CBB HEC sing 148 n n CAB HAB HEC sing 149 n n CBB HBB1 HEC sing 150 n n CBB HBB2 HEC sing 151 n n CBB HBB3 HEC sing 152 n n NC C1C HEC sing 153 n y NC C4C HEC sing 154 n y C1C C2C HEC doub 155 n y C2C C3C HEC sing 156 n y C2C CMC HEC sing 157 n n C3C C4C HEC sing 158 n y C3C CAC HEC doub 159 e n CMC HMC1 HEC sing 160 n n CMC HMC2 HEC sing 161 n n CMC HMC3 HEC sing 162 n n CAC CBC HEC sing 163 n n CAC HAC HEC sing 164 n n CBC HBC1 HEC sing 165 n n CBC HBC2 HEC sing 166 n n CBC HBC3 HEC sing 167 n n ND C1D HEC sing 168 n y ND C4D HEC sing 169 n y C1D C2D HEC doub 170 n y C2D C3D HEC sing 171 n y C2D CMD HEC sing 172 n n C3D C4D HEC doub 173 n y C3D CAD HEC sing 174 n n CMD HMD1 HEC sing 175 n n CMD HMD2 HEC sing 176 n n CMD HMD3 HEC sing 177 n n CAD CBD HEC sing 178 n n CAD HAD1 HEC sing 179 n n CAD HAD2 HEC sing 180 n n CBD CGD HEC sing 181 n n CBD HBD1 HEC sing 182 n n CBD HBD2 HEC sing 183 n n CGD O1D HEC doub 184 n n CGD O2D HEC sing 185 n n O2D H2D HEC sing 186 n n # _atom_sites.entry_id 1IT1 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 201 201 HEC HEC . C 2 HEC A 1 202 202 HEC HEC . D 2 HEC A 1 203 203 HEC HEC . E 2 HEC A 1 204 204 HEC HEC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . E 2 -5.837 -1.76 2.077 1 0 ? FE HEC 204 A 1 HETATM 2 C CHA HEC . . . E 2 -6.509 1.232 3.48 1 0 ? CHA HEC 204 A 1 HETATM 3 C CHB HEC . . . E 2 -9.087 -2.175 1.379 1 0 ? CHB HEC 204 A 1 HETATM 4 C CHC HEC . . . E 2 -5.127 -4.835 0.901 1 0 ? CHC HEC 204 A 1 HETATM 5 C CHD HEC . . . E 2 -2.541 -1.192 2.524 1 0 ? CHD HEC 204 A 1 HETATM 6 N NA HEC . . . E 2 -7.439 -0.763 2.459 1 0 ? NA HEC 204 A 1 HETATM 7 C C1A HEC . . . E 2 -7.553 0.46 3.082 1 0 ? C1A HEC 204 A 1 HETATM 8 C C2A HEC . . . E 2 -8.9 0.933 3.128 1 0 ? C2A HEC 204 A 1 HETATM 9 C C3A HEC . . . E 2 -9.648 -0.007 2.518 1 0 ? C3A HEC 204 A 1 HETATM 10 C C4A HEC . . . E 2 -8.735 -1.061 2.106 1 0 ? C4A HEC 204 A 1 HETATM 11 C CMA HEC . . . E 2 -11.14 0.081 2.237 1 0 ? CMA HEC 204 A 1 HETATM 12 C CAA HEC . . . E 2 -9.338 2.278 3.693 1 0 ? CAA HEC 204 A 1 HETATM 13 C CBA HEC . . . E 2 -10.194 3.034 2.679 1 0 ? CBA HEC 204 A 1 HETATM 14 C CGA HEC . . . E 2 -10.518 4.429 3.219 1 0 ? CGA HEC 204 A 1 HETATM 15 O O1A HEC . . . E 2 -10.227 5.393 2.528 1 0 ? O1A HEC 204 A 1 HETATM 16 O O2A HEC . . . E 2 -11.05 4.51 4.313 1 0 ? O2A HEC 204 A 1 HETATM 17 N NB HEC . . . E 2 -6.869 -3.169 1.287 1 0 ? NB HEC 204 A 1 HETATM 18 C C1B HEC . . . E 2 -8.208 -3.152 0.964 1 0 ? C1B HEC 204 A 1 HETATM 19 C C2B HEC . . . E 2 -8.568 -4.299 0.164 1 0 ? C2B HEC 204 A 1 HETATM 20 C C3B HEC . . . E 2 -7.448 -5.04 0.076 1 0 ? C3B HEC 204 A 1 HETATM 21 C C4B HEC . . . E 2 -6.414 -4.358 0.782 1 0 ? C4B HEC 204 A 1 HETATM 22 C CMB HEC . . . E 2 -9.926 -4.604 -0.45 1 0 ? CMB HEC 204 A 1 HETATM 23 C CAB HEC . . . E 2 -7.273 -6.449 -0.425 1 0 ? CAB HEC 204 A 1 HETATM 24 C CBB HEC . . . E 2 -6.796 -6.469 -1.873 1 0 ? CBB HEC 204 A 1 HETATM 25 N NC HEC . . . E 2 -4.212 -2.76 1.73 1 0 ? NC HEC 204 A 1 HETATM 26 C C1C HEC . . . E 2 -4.089 -4.07 1.332 1 0 ? C1C HEC 204 A 1 HETATM 27 C C2C HEC . . . E 2 -2.725 -4.53 1.411 1 0 ? C2C HEC 204 A 1 HETATM 28 C C3C HEC . . . E 2 -2.016 -3.48 1.846 1 0 ? C3C HEC 204 A 1 HETATM 29 C C4C HEC . . . E 2 -2.923 -2.39 2.001 1 0 ? C4C HEC 204 A 1 HETATM 30 C CMC HEC . . . E 2 -2.199 -5.918 1.09 1 0 ? CMC HEC 204 A 1 HETATM 31 C CAC HEC . . . E 2 -0.586 -3.431 2.31 1 0 ? CAC HEC 204 A 1 HETATM 32 C CBC HEC . . . E 2 0.424 -3.306 1.169 1 0 ? CBC HEC 204 A 1 HETATM 33 N ND HEC . . . E 2 -4.771 -0.302 2.786 1 0 ? ND HEC 204 A 1 HETATM 34 C C1D HEC . . . E 2 -3.404 -0.201 2.874 1 0 ? C1D HEC 204 A 1 HETATM 35 C C2D HEC . . . E 2 -2.989 1.055 3.444 1 0 ? C2D HEC 204 A 1 HETATM 36 C C3D HEC . . . E 2 -4.12 1.72 3.72 1 0 ? C3D HEC 204 A 1 HETATM 37 C C4D HEC . . . E 2 -5.207 0.882 3.325 1 0 ? C4D HEC 204 A 1 HETATM 38 C CMD HEC . . . E 2 -1.564 1.532 3.675 1 0 ? CMD HEC 204 A 1 HETATM 39 C CAD HEC . . . E 2 -4.249 3.107 4.307 1 0 ? CAD HEC 204 A 1 HETATM 40 C CBD HEC . . . E 2 -3.875 3.105 5.788 1 0 ? CBD HEC 204 A 1 HETATM 41 C CGD HEC . . . E 2 -4.668 4.196 6.511 1 0 ? CGD HEC 204 A 1 HETATM 42 O O1D HEC . . . E 2 -5.639 3.86 7.165 1 0 ? O1D HEC 204 A 1 HETATM 43 O O2D HEC . . . E 2 -4.287 5.35 6.397 1 0 ? O2D HEC 204 A 1 HETATM 44 H HHA HEC . . . E 2 -6.753 2.207 3.915 1 0 ? HHA HEC 204 A 1 HETATM 45 H HHB HEC . . . E 2 -10.137 -2.295 1.111 1 0 ? HHB HEC 204 A 1 HETATM 46 H HHC HEC . . . E 2 -4.839 -5.901 0.92 1 0 ? HHC HEC 204 A 1 HETATM 47 H HHD HEC . . . E 2 -1.487 -1.054 2.768 1 0 ? HHD HEC 204 A 1 HETATM 48 H HMA1 HEC . . . E 2 -11.672 0.235 3.164 1 0 ? HMA1 HEC 204 A 1 HETATM 49 H HMA2 HEC . . . E 2 -11.475 -0.837 1.779 1 0 ? HMA2 HEC 204 A 1 HETATM 50 H HMA3 HEC . . . E 2 -11.332 0.909 1.569 1 0 ? HMA3 HEC 204 A 1 HETATM 51 H HAA1 HEC . . . E 2 -9.913 2.117 4.592 1 0 ? HAA1 HEC 204 A 1 HETATM 52 H HAA2 HEC . . . E 2 -8.465 2.868 3.931 1 0 ? HAA2 HEC 204 A 1 HETATM 53 H HBA1 HEC . . . E 2 -9.657 3.123 1.744 1 0 ? HBA1 HEC 204 A 1 HETATM 54 H HBA2 HEC . . . E 2 -11.11 2.494 2.515 1 0 ? HBA2 HEC 204 A 1 HETATM 55 H HMB1 HEC . . . E 2 -10.613 -3.802 -0.223 1 0 ? HMB1 HEC 204 A 1 HETATM 56 H HMB2 HEC . . . E 2 -9.824 -4.698 -1.521 1 0 ? HMB2 HEC 204 A 1 HETATM 57 H HMB3 HEC . . . E 2 -10.305 -5.529 -0.042 1 0 ? HMB3 HEC 204 A 1 HETATM 58 H HAB HEC . . . E 2 -6.549 -6.958 0.199 1 0 ? HAB HEC 204 A 1 HETATM 59 H HBB1 HEC . . . E 2 -5.737 -6.255 -1.9 1 0 ? HBB1 HEC 204 A 1 HETATM 60 H HBB2 HEC . . . E 2 -7.33 -5.72 -2.438 1 0 ? HBB2 HEC 204 A 1 HETATM 61 H HBB3 HEC . . . E 2 -6.979 -7.443 -2.3 1 0 ? HBB3 HEC 204 A 1 HETATM 62 H HMC1 HEC . . . E 2 -1.746 -6.345 1.975 1 0 ? HMC1 HEC 204 A 1 HETATM 63 H HMC2 HEC . . . E 2 -3.015 -6.546 0.765 1 0 ? HMC2 HEC 204 A 1 HETATM 64 H HMC3 HEC . . . E 2 -1.462 -5.849 0.305 1 0 ? HMC3 HEC 204 A 1 HETATM 65 H HAC HEC . . . E 2 -0.468 -2.599 2.997 1 0 ? HAC HEC 204 A 1 HETATM 66 H HBC1 HEC . . . E 2 0.443 -4.226 0.602 1 0 ? HBC1 HEC 204 A 1 HETATM 67 H HBC2 HEC . . . E 2 1.406 -3.113 1.576 1 0 ? HBC2 HEC 204 A 1 HETATM 68 H HBC3 HEC . . . E 2 0.137 -2.49 0.521 1 0 ? HBC3 HEC 204 A 1 HETATM 69 H HMD1 HEC . . . E 2 -0.871 0.79 3.306 1 0 ? HMD1 HEC 204 A 1 HETATM 70 H HMD2 HEC . . . E 2 -1.406 2.463 3.151 1 0 ? HMD2 HEC 204 A 1 HETATM 71 H HMD3 HEC . . . E 2 -1.402 1.682 4.731 1 0 ? HMD3 HEC 204 A 1 HETATM 72 H HAD1 HEC . . . E 2 -3.593 3.777 3.777 1 0 ? HAD1 HEC 204 A 1 HETATM 73 H HAD2 HEC . . . E 2 -5.268 3.447 4.202 1 0 ? HAD2 HEC 204 A 1 HETATM 74 H HBD1 HEC . . . E 2 -4.108 2.143 6.216 1 0 ? HBD1 HEC 204 A 1 HETATM 75 H HBD2 HEC . . . E 2 -2.821 3.299 5.891 1 0 ? HBD2 HEC 204 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 287 _model_server_stats.query_time_ms 5496 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 75 #