data_1IT8 # _model_server_result.job_id m5jaJkKDOWsxALJAMjDjkA _model_server_result.datetime_utc '2024-10-18 16:27:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1it8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":602}' # _entry.id 1IT8 # _exptl.entry_id 1IT8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.147 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDINE-5-CARBONITRILE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1IT8 _cell.length_a 100.467 _cell.length_b 100.467 _cell.length_c 366.168 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IT8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 279 A CYS 279 1_555 C ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc2 A SG CYS 281 A CYS 281 1_555 C ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc3 A SG CYS 284 A CYS 284 1_555 C ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc4 A ND1 HIS 307 A HIS 307 1_555 C ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc5 A O ALA 528 A ALA 528 1_555 D MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc6 A O MET 566 A MET 566 1_555 D MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.889 ? metalc ? metalc7 A O ILE 567 A ILE 567 1_555 D MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc8 A O PHE 569 A PHE 569 1_555 D MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc9 A NE2 GLN 570 A GLN 570 1_555 D MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.127 ? metalc ? metalc10 B SG CYS 279 B CYS 279 1_555 F ZN ZN . B ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc11 B SG CYS 281 B CYS 281 1_555 F ZN ZN . B ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc12 B SG CYS 284 B CYS 284 1_555 F ZN ZN . B ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc13 B ND1 HIS 307 B HIS 307 1_555 F ZN ZN . B ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc14 B O ALA 528 B ALA 528 1_555 G MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc15 B O VAL 531 B VAL 531 1_555 G MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.067 ? metalc ? metalc16 B O MET 566 B MET 566 1_555 G MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.116 ? metalc ? metalc17 B O ILE 567 B ILE 567 1_555 G MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc18 B O PHE 569 B PHE 569 1_555 G MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? # _chem_comp.formula 'C7 H5 N5 O' _chem_comp.formula_weight 175.147 _chem_comp.id PQ0 _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDINE-5-CARBONITRILE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 7-DEAZA-7-CYANO-GUANINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PQ0 sing 260 n y N1 C6 PQ0 sing 261 n y N1 HN1 PQ0 sing 262 n n C2 N3 PQ0 doub 263 n y C2 N2 PQ0 sing 264 n n N3 C4 PQ0 sing 265 n y C4 C5 PQ0 doub 266 n y C4 N9 PQ0 sing 267 n y C5 C6 PQ0 sing 268 n y C5 C7 PQ0 sing 269 n y C6 O6 PQ0 doub 270 n n C7 C10 PQ0 sing 271 n n C7 C8 PQ0 doub 272 n y C10 N11 PQ0 trip 273 n n C8 N9 PQ0 sing 274 n y C8 H8 PQ0 sing 275 n n N9 HN9 PQ0 sing 276 n n N2 HN21 PQ0 sing 277 n n N2 HN22 PQ0 sing 278 n n # _atom_sites.entry_id 1IT8 _atom_sites.fract_transf_matrix[1][1] 0.009954 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009954 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002731 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 600 600 ZN ZN . D 3 MG A 1 601 601 MG MG . E 4 PQ0 A 1 602 602 PQ0 PQ0 . F 2 ZN B 1 600 600 ZN ZN . G 3 MG B 1 601 601 MG MG . H 5 HOH A 1 603 1 HOH TIP . H 5 HOH A 2 604 3 HOH TIP . H 5 HOH A 3 605 4 HOH TIP . H 5 HOH A 4 606 6 HOH TIP . H 5 HOH A 5 607 7 HOH TIP . H 5 HOH A 6 608 8 HOH TIP . H 5 HOH A 7 609 9 HOH TIP . H 5 HOH A 8 610 14 HOH TIP . H 5 HOH A 9 611 15 HOH TIP . H 5 HOH A 10 612 17 HOH TIP . H 5 HOH A 11 613 19 HOH TIP . H 5 HOH A 12 614 20 HOH TIP . H 5 HOH A 13 615 21 HOH TIP . H 5 HOH A 14 616 22 HOH TIP . H 5 HOH A 15 617 24 HOH TIP . H 5 HOH A 16 618 26 HOH TIP . H 5 HOH A 17 619 27 HOH TIP . H 5 HOH A 18 620 28 HOH TIP . H 5 HOH A 19 621 30 HOH TIP . H 5 HOH A 20 622 34 HOH TIP . H 5 HOH A 21 623 35 HOH TIP . H 5 HOH A 22 624 36 HOH TIP . H 5 HOH A 23 625 39 HOH TIP . H 5 HOH A 24 626 44 HOH TIP . H 5 HOH A 25 627 46 HOH TIP . H 5 HOH A 26 628 48 HOH TIP . H 5 HOH A 27 629 49 HOH TIP . H 5 HOH A 28 630 50 HOH TIP . H 5 HOH A 29 631 51 HOH TIP . H 5 HOH A 30 632 52 HOH TIP . H 5 HOH A 31 633 54 HOH TIP . H 5 HOH A 32 634 55 HOH TIP . H 5 HOH A 33 635 56 HOH TIP . H 5 HOH A 34 636 57 HOH TIP . H 5 HOH A 35 637 58 HOH TIP . H 5 HOH A 36 638 59 HOH TIP . H 5 HOH A 37 639 60 HOH TIP . H 5 HOH A 38 640 61 HOH TIP . H 5 HOH A 39 641 65 HOH TIP . H 5 HOH A 40 642 66 HOH TIP . H 5 HOH A 41 643 67 HOH TIP . H 5 HOH A 42 644 68 HOH TIP . H 5 HOH A 43 645 71 HOH TIP . H 5 HOH A 44 646 73 HOH TIP . H 5 HOH A 45 647 75 HOH TIP . H 5 HOH A 46 648 78 HOH TIP . H 5 HOH A 47 649 79 HOH TIP . H 5 HOH A 48 650 80 HOH TIP . H 5 HOH A 49 651 81 HOH TIP . H 5 HOH A 50 652 83 HOH TIP . H 5 HOH A 51 653 84 HOH TIP . H 5 HOH A 52 654 87 HOH TIP . H 5 HOH A 53 655 91 HOH TIP . H 5 HOH A 54 656 95 HOH TIP . H 5 HOH A 55 657 96 HOH TIP . H 5 HOH A 56 658 97 HOH TIP . H 5 HOH A 57 659 99 HOH TIP . H 5 HOH A 58 660 100 HOH TIP . H 5 HOH A 59 661 103 HOH TIP . H 5 HOH A 60 662 104 HOH TIP . H 5 HOH A 61 663 105 HOH TIP . H 5 HOH A 62 664 106 HOH TIP . H 5 HOH A 63 665 110 HOH TIP . H 5 HOH A 64 666 111 HOH TIP . H 5 HOH A 65 667 113 HOH TIP . H 5 HOH A 66 668 114 HOH TIP . H 5 HOH A 67 669 115 HOH TIP . H 5 HOH A 68 670 117 HOH TIP . H 5 HOH A 69 671 121 HOH TIP . H 5 HOH A 70 672 123 HOH TIP . H 5 HOH A 71 673 127 HOH TIP . H 5 HOH A 72 674 128 HOH TIP . H 5 HOH A 73 675 129 HOH TIP . H 5 HOH A 74 676 130 HOH TIP . H 5 HOH A 75 677 133 HOH TIP . H 5 HOH A 76 678 137 HOH TIP . I 5 HOH B 1 602 2 HOH TIP . I 5 HOH B 2 603 5 HOH TIP . I 5 HOH B 3 604 10 HOH TIP . I 5 HOH B 4 605 11 HOH TIP . I 5 HOH B 5 606 12 HOH TIP . I 5 HOH B 6 607 13 HOH TIP . I 5 HOH B 7 608 16 HOH TIP . I 5 HOH B 8 609 18 HOH TIP . I 5 HOH B 9 610 23 HOH TIP . I 5 HOH B 10 611 25 HOH TIP . I 5 HOH B 11 612 29 HOH TIP . I 5 HOH B 12 613 31 HOH TIP . I 5 HOH B 13 614 32 HOH TIP . I 5 HOH B 14 615 33 HOH TIP . I 5 HOH B 15 616 37 HOH TIP . I 5 HOH B 16 617 38 HOH TIP . I 5 HOH B 17 618 40 HOH TIP . I 5 HOH B 18 619 41 HOH TIP . I 5 HOH B 19 620 42 HOH TIP . I 5 HOH B 20 621 43 HOH TIP . I 5 HOH B 21 622 45 HOH TIP . I 5 HOH B 22 623 47 HOH TIP . I 5 HOH B 23 624 53 HOH TIP . I 5 HOH B 24 625 62 HOH TIP . I 5 HOH B 25 626 63 HOH TIP . I 5 HOH B 26 627 64 HOH TIP . I 5 HOH B 27 628 69 HOH TIP . I 5 HOH B 28 629 70 HOH TIP . I 5 HOH B 29 630 72 HOH TIP . I 5 HOH B 30 631 74 HOH TIP . I 5 HOH B 31 632 76 HOH TIP . I 5 HOH B 32 633 77 HOH TIP . I 5 HOH B 33 634 82 HOH TIP . I 5 HOH B 34 635 85 HOH TIP . I 5 HOH B 35 636 86 HOH TIP . I 5 HOH B 36 637 88 HOH TIP . I 5 HOH B 37 638 89 HOH TIP . I 5 HOH B 38 639 90 HOH TIP . I 5 HOH B 39 640 92 HOH TIP . I 5 HOH B 40 641 93 HOH TIP . I 5 HOH B 41 642 94 HOH TIP . I 5 HOH B 42 643 98 HOH TIP . I 5 HOH B 43 644 101 HOH TIP . I 5 HOH B 44 645 102 HOH TIP . I 5 HOH B 45 646 107 HOH TIP . I 5 HOH B 46 647 108 HOH TIP . I 5 HOH B 47 648 109 HOH TIP . I 5 HOH B 48 649 112 HOH TIP . I 5 HOH B 49 650 116 HOH TIP . I 5 HOH B 50 651 118 HOH TIP . I 5 HOH B 51 652 119 HOH TIP . I 5 HOH B 52 653 120 HOH TIP . I 5 HOH B 53 654 122 HOH TIP . I 5 HOH B 54 655 124 HOH TIP . I 5 HOH B 55 656 125 HOH TIP . I 5 HOH B 56 657 126 HOH TIP . I 5 HOH B 57 658 131 HOH TIP . I 5 HOH B 58 659 132 HOH TIP . I 5 HOH B 59 660 134 HOH TIP . I 5 HOH B 60 661 135 HOH TIP . I 5 HOH B 61 662 136 HOH TIP . I 5 HOH B 62 663 138 HOH TIP . I 5 HOH B 63 664 139 HOH TIP . I 5 HOH B 64 665 140 HOH TIP . I 5 HOH B 65 666 141 HOH TIP . I 5 HOH B 66 667 142 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PQ0 . . . E 4 34.509 36.982 79.328 1 27.4 ? N1 PQ0 602 A 1 HETATM 2 C C2 PQ0 . . . E 4 35.594 37.844 79.555 1 26.17 ? C2 PQ0 602 A 1 HETATM 3 N N3 PQ0 . . . E 4 36.006 38.645 78.603 1 25.79 ? N3 PQ0 602 A 1 HETATM 4 C C4 PQ0 . . . E 4 35.345 38.659 77.278 1 25.43 ? C4 PQ0 602 A 1 HETATM 5 C C5 PQ0 . . . E 4 34.303 37.845 77.02 1 25.9 ? C5 PQ0 602 A 1 HETATM 6 C C6 PQ0 . . . E 4 33.838 36.938 78.105 1 25.78 ? C6 PQ0 602 A 1 HETATM 7 O O6 PQ0 . . . E 4 32.905 36.208 77.877 1 24.43 ? O6 PQ0 602 A 1 HETATM 8 C C7 PQ0 . . . E 4 33.955 38.164 75.623 1 26.06 ? C7 PQ0 602 A 1 HETATM 9 C C10 PQ0 . . . E 4 32.921 37.581 74.839 1 28.53 ? C10 PQ0 602 A 1 HETATM 10 N N11 PQ0 . . . E 4 32.151 37.026 74.153 1 29.6 ? N11 PQ0 602 A 1 HETATM 11 C C8 PQ0 . . . E 4 34.807 39.097 75.252 1 27.54 ? C8 PQ0 602 A 1 HETATM 12 N N9 PQ0 . . . E 4 35.609 39.371 76.23 1 26.32 ? N9 PQ0 602 A 1 HETATM 13 N N2 PQ0 . . . E 4 36.16 37.82 80.711 1 25.62 ? N2 PQ0 602 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #