data_1IVB # _model_server_result.job_id 7bc1o64o1Bh4pF42hPlWtg _model_server_result.datetime_utc '2024-11-08 01:52:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ivb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":471}' # _entry.id 1IVB # _exptl.entry_id 1IVB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 240.17 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(ACETYLAMINO)-3-HYDROXY-5-NITROBENZOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1IVB _cell.length_a 124.54 _cell.length_b 124.54 _cell.length_c 71.82 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IVB _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 124.54 0 0 3 'crystal symmetry operation' 3_545 -y+1/2,x-1/2,z 0 -1 0 1 0 0 0 0 1 62.27 -62.27 0 4 'crystal symmetry operation' 4_555 y+1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 62.27 62.27 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 87 1_555 A SG CYS 344 A CYS 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 A SG CYS 46 A CYS 122 1_555 A SG CYS 51 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 106 A CYS 182 1_555 A SG CYS 153 A CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf4 A SG CYS 155 A CYS 231 1_555 A SG CYS 160 A CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 A SG CYS 201 A CYS 277 1_555 A SG CYS 215 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 A SG CYS 203 A CYS 279 1_555 A SG CYS 213 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 A SG CYS 242 A CYS 318 1_555 A SG CYS 261 A CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf8 A SG CYS 348 A CYS 424 1_555 A SG CYS 371 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? covale ? covale1 A ND2 ASN 208 A ASN 284 1_555 B C1 NAG . A NAG 467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.482 ? metalc ? metalc1 A OE1 GLU 92 A GLU 168 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc2 A OE1 GLU 92 A GLU 168 2_655 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc3 A OE1 GLU 92 A GLU 168 4_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc4 A OE1 GLU 92 A GLU 168 3_545 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc5 A O ASP 217 A ASP 293 1_555 C CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc6 A O THR 221 A THR 297 1_555 C CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc7 A OD2 ASP 248 A ASP 324 1_555 C CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc8 A O TRP 268 A TRP 344 1_555 C CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.37 ? metalc ? metalc9 A O GLY 270 A GLY 346 1_555 C CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? # _chem_comp.formula 'C9 H8 N2 O6' _chem_comp.formula_weight 240.17 _chem_comp.id ST1 _chem_comp.mon_nstd_flag . _chem_comp.name '4-(ACETYLAMINO)-3-HYDROXY-5-NITROBENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C' O1' ST1 doub 318 n n C' O2' ST1 sing 319 n n C' C1 ST1 sing 320 n n O2' HO2' ST1 sing 321 n n C1 C2 ST1 doub 322 n y C1 C6 ST1 sing 323 n y C2 C3 ST1 sing 324 n y C2 H2 ST1 sing 325 n n C3 O3 ST1 sing 326 n n C3 C4 ST1 doub 327 n y O3 HO3 ST1 sing 328 n n C4 N4 ST1 sing 329 n n C4 C5 ST1 sing 330 n y N4 C4' ST1 sing 331 n n N4 HN4 ST1 sing 332 n n C4' O4' ST1 doub 333 n n C4' CM4 ST1 sing 334 n n CM4 HM41 ST1 sing 335 n n CM4 HM42 ST1 sing 336 n n CM4 HM43 ST1 sing 337 n n C5 N5 ST1 sing 338 n n C5 C6 ST1 doub 339 n y N5 ON1 ST1 doub 340 n n N5 ON2 ST1 sing 341 n n C6 H6 ST1 sing 342 n n # _atom_sites.entry_id 1IVB _atom_sites.fract_transf_matrix[1][1] 0.00803 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00803 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013924 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 467 467 NAG NAG . C 3 CA A 1 500 500 CA CA . D 3 CA A 1 501 501 CA CA . E 4 ST1 A 1 471 471 ST1 ST1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C' ST1 . . . E 4 33.392 -12.762 66.347 1 15 ? C' ST1 471 A 1 HETATM 2 O O1' ST1 . . . E 4 32.567 -13.678 66.246 1 15 ? O1' ST1 471 A 1 HETATM 3 O O2' ST1 . . . E 4 34.423 -12.907 67.023 1 15 ? O2' ST1 471 A 1 HETATM 4 C C1 ST1 . . . E 4 33.12 -11.566 65.679 1 15 ? C1 ST1 471 A 1 HETATM 5 C C2 ST1 . . . E 4 34.105 -10.621 65.46 1 15 ? C2 ST1 471 A 1 HETATM 6 C C3 ST1 . . . E 4 33.838 -9.46 64.754 1 15 ? C3 ST1 471 A 1 HETATM 7 O O3 ST1 . . . E 4 34.828 -8.499 64.599 1 15 ? O3 ST1 471 A 1 HETATM 8 C C4 ST1 . . . E 4 32.564 -9.228 64.235 1 15 ? C4 ST1 471 A 1 HETATM 9 N N4 ST1 . . . E 4 32.374 -8.11 63.37 1 15 ? N4 ST1 471 A 1 HETATM 10 C C4' ST1 . . . E 4 31.434 -7.24 63.745 1 15 ? C4' ST1 471 A 1 HETATM 11 O O4' ST1 . . . E 4 31.376 -6.775 64.885 1 15 ? O4' ST1 471 A 1 HETATM 12 C CM4 ST1 . . . E 4 30.491 -6.714 62.693 1 15 ? CM4 ST1 471 A 1 HETATM 13 C C5 ST1 . . . E 4 31.54 -10.225 64.478 1 15 ? C5 ST1 471 A 1 HETATM 14 N N5 ST1 . . . E 4 30.285 -10.157 63.891 1 15 ? N5 ST1 471 A 1 HETATM 15 O ON1 ST1 . . . E 4 30.229 -10.862 62.908 1 15 ? ON1 ST1 471 A 1 HETATM 16 O ON2 ST1 . . . E 4 29.52 -9.433 64.519 1 15 ? ON2 ST1 471 A 1 HETATM 17 C C6 ST1 . . . E 4 31.856 -11.336 65.186 1 15 ? C6 ST1 471 A 1 HETATM 18 H HO3 ST1 . . . E 4 34.448 -7.712 64.195 1 15 ? HO3 ST1 471 A 1 HETATM 19 H HN4 ST1 . . . E 4 32.9 -7.982 62.557 1 15 ? HN4 ST1 471 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 19 #