data_1IVN # _model_server_result.job_id DFFKpTKS0kVMn7pTYrOS7Q _model_server_result.datetime_utc '2024-11-24 18:20:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ivn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 1IVN # _exptl.entry_id 1IVN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1IVN _cell.length_a 49.936 _cell.length_b 49.936 _cell.length_c 170.364 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IVN _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 49.936 49.936 85.182 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 1IVN _atom_sites.fract_transf_matrix[1][1] 0.020026 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020026 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00587 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 501 SO4 SO4 . C 3 GOL A 1 301 301 GOL GOL . D 4 HOH A 1 502 1 HOH HOH . D 4 HOH A 2 503 2 HOH HOH . D 4 HOH A 3 504 3 HOH HOH . D 4 HOH A 4 505 4 HOH HOH . D 4 HOH A 5 506 5 HOH HOH . D 4 HOH A 6 507 6 HOH HOH . D 4 HOH A 7 508 7 HOH HOH . D 4 HOH A 8 509 8 HOH HOH . D 4 HOH A 9 510 9 HOH HOH . D 4 HOH A 10 511 10 HOH HOH . D 4 HOH A 11 512 11 HOH HOH . D 4 HOH A 12 513 12 HOH HOH . D 4 HOH A 13 514 13 HOH HOH . D 4 HOH A 14 515 14 HOH HOH . D 4 HOH A 15 516 15 HOH HOH . D 4 HOH A 16 517 16 HOH HOH . D 4 HOH A 17 518 17 HOH HOH . D 4 HOH A 18 519 18 HOH HOH . D 4 HOH A 19 520 19 HOH HOH . D 4 HOH A 20 521 20 HOH HOH . D 4 HOH A 21 522 21 HOH HOH . D 4 HOH A 22 523 22 HOH HOH . D 4 HOH A 23 524 23 HOH HOH . D 4 HOH A 24 525 24 HOH HOH . D 4 HOH A 25 526 25 HOH HOH . D 4 HOH A 26 527 26 HOH HOH . D 4 HOH A 27 528 27 HOH HOH . D 4 HOH A 28 529 28 HOH HOH . D 4 HOH A 29 530 29 HOH HOH . D 4 HOH A 30 531 30 HOH HOH . D 4 HOH A 31 532 31 HOH HOH . D 4 HOH A 32 533 32 HOH HOH . D 4 HOH A 33 534 33 HOH HOH . D 4 HOH A 34 535 34 HOH HOH . D 4 HOH A 35 536 35 HOH HOH . D 4 HOH A 36 537 36 HOH HOH . D 4 HOH A 37 538 37 HOH HOH . D 4 HOH A 38 539 38 HOH HOH . D 4 HOH A 39 540 39 HOH HOH . D 4 HOH A 40 541 40 HOH HOH . D 4 HOH A 41 542 41 HOH HOH . D 4 HOH A 42 543 42 HOH HOH . D 4 HOH A 43 544 43 HOH HOH . D 4 HOH A 44 545 44 HOH HOH . D 4 HOH A 45 546 45 HOH HOH . D 4 HOH A 46 547 46 HOH HOH . D 4 HOH A 47 548 47 HOH HOH . D 4 HOH A 48 549 48 HOH HOH . D 4 HOH A 49 550 49 HOH HOH . D 4 HOH A 50 551 50 HOH HOH . D 4 HOH A 51 552 51 HOH HOH . D 4 HOH A 52 553 52 HOH HOH . D 4 HOH A 53 554 53 HOH HOH . D 4 HOH A 54 555 54 HOH HOH . D 4 HOH A 55 556 55 HOH HOH . D 4 HOH A 56 557 56 HOH HOH . D 4 HOH A 57 558 57 HOH HOH . D 4 HOH A 58 559 58 HOH HOH . D 4 HOH A 59 560 59 HOH HOH . D 4 HOH A 60 561 60 HOH HOH . D 4 HOH A 61 562 61 HOH HOH . D 4 HOH A 62 563 62 HOH HOH . D 4 HOH A 63 564 63 HOH HOH . D 4 HOH A 64 565 64 HOH HOH . D 4 HOH A 65 566 65 HOH HOH . D 4 HOH A 66 567 66 HOH HOH . D 4 HOH A 67 568 67 HOH HOH . D 4 HOH A 68 569 68 HOH HOH . D 4 HOH A 69 570 69 HOH HOH . D 4 HOH A 70 571 70 HOH HOH . D 4 HOH A 71 572 71 HOH HOH . D 4 HOH A 72 573 72 HOH HOH . D 4 HOH A 73 574 73 HOH HOH . D 4 HOH A 74 575 74 HOH HOH . D 4 HOH A 75 576 75 HOH HOH . D 4 HOH A 76 577 76 HOH HOH . D 4 HOH A 77 578 77 HOH HOH . D 4 HOH A 78 579 78 HOH HOH . D 4 HOH A 79 580 79 HOH HOH . D 4 HOH A 80 581 80 HOH HOH . D 4 HOH A 81 582 81 HOH HOH . D 4 HOH A 82 583 82 HOH HOH . D 4 HOH A 83 584 83 HOH HOH . D 4 HOH A 84 585 84 HOH HOH . D 4 HOH A 85 586 85 HOH HOH . D 4 HOH A 86 587 86 HOH HOH . D 4 HOH A 87 588 87 HOH HOH . D 4 HOH A 88 589 88 HOH HOH . D 4 HOH A 89 590 89 HOH HOH . D 4 HOH A 90 591 90 HOH HOH . D 4 HOH A 91 592 91 HOH HOH . D 4 HOH A 92 593 92 HOH HOH . D 4 HOH A 93 594 93 HOH HOH . D 4 HOH A 94 595 94 HOH HOH . D 4 HOH A 95 596 95 HOH HOH . D 4 HOH A 96 597 96 HOH HOH . D 4 HOH A 97 598 97 HOH HOH . D 4 HOH A 98 599 98 HOH HOH . D 4 HOH A 99 600 99 HOH HOH . D 4 HOH A 100 601 100 HOH HOH . D 4 HOH A 101 602 101 HOH HOH . D 4 HOH A 102 603 102 HOH HOH . D 4 HOH A 103 604 103 HOH HOH . D 4 HOH A 104 605 104 HOH HOH . D 4 HOH A 105 606 105 HOH HOH . D 4 HOH A 106 607 106 HOH HOH . D 4 HOH A 107 608 107 HOH HOH . D 4 HOH A 108 609 108 HOH HOH . D 4 HOH A 109 610 109 HOH HOH . D 4 HOH A 110 611 110 HOH HOH . D 4 HOH A 111 612 111 HOH HOH . D 4 HOH A 112 613 112 HOH HOH . D 4 HOH A 113 614 113 HOH HOH . D 4 HOH A 114 615 114 HOH HOH . D 4 HOH A 115 616 115 HOH HOH . D 4 HOH A 116 617 116 HOH HOH . D 4 HOH A 117 618 117 HOH HOH . D 4 HOH A 118 619 118 HOH HOH . D 4 HOH A 119 620 119 HOH HOH . D 4 HOH A 120 621 120 HOH HOH . D 4 HOH A 121 622 121 HOH HOH . D 4 HOH A 122 623 122 HOH HOH . D 4 HOH A 123 624 123 HOH HOH . D 4 HOH A 124 625 124 HOH HOH . D 4 HOH A 125 626 125 HOH HOH . D 4 HOH A 126 627 126 HOH HOH . D 4 HOH A 127 628 127 HOH HOH . D 4 HOH A 128 629 128 HOH HOH . D 4 HOH A 129 630 129 HOH HOH . D 4 HOH A 130 631 130 HOH HOH . D 4 HOH A 131 632 131 HOH HOH . D 4 HOH A 132 633 132 HOH HOH . D 4 HOH A 133 634 133 HOH HOH . D 4 HOH A 134 635 134 HOH HOH . D 4 HOH A 135 636 135 HOH HOH . D 4 HOH A 136 637 136 HOH HOH . D 4 HOH A 137 638 137 HOH HOH . D 4 HOH A 138 639 138 HOH HOH . D 4 HOH A 139 640 139 HOH HOH . D 4 HOH A 140 641 140 HOH HOH . D 4 HOH A 141 642 141 HOH HOH . D 4 HOH A 142 643 142 HOH HOH . D 4 HOH A 143 644 143 HOH HOH . D 4 HOH A 144 645 144 HOH HOH . D 4 HOH A 145 646 145 HOH HOH . D 4 HOH A 146 647 146 HOH HOH . D 4 HOH A 147 648 147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 5.298 32.541 53.421 1 56.97 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . C 3 5.934 33.085 52.013 1 58.32 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . C 3 4.69 33.293 54.661 1 56.83 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . C 3 5.334 34.581 54.776 1 59.22 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . C 3 4.913 32.489 55.983 1 56.29 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . C 3 4.617 33.298 57.127 1 54.89 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #