data_1IVQ # _model_server_result.job_id aBo7qfNq9aemV-m_XWbGPA _model_server_result.datetime_utc '2024-10-11 10:25:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ivq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":100}' # _entry.id 1IVQ # _exptl.entry_id 1IVQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 609.799 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N~1~-{(1S,2S,4S)-1-(cyclohexylmethyl)-4-[(2,2-dimethylpropyl)carbamoyl]-2-hydroxy-5-methylhexyl}-N~2~-(quinolin-2-ylcar bonyl)-L-aspartamide' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1IVQ _cell.length_a 32.2 _cell.length_b 46.23 _cell.length_c 135.59 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IVQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C34 H51 N5 O5' _chem_comp.formula_weight 609.799 _chem_comp.id 0PX _chem_comp.mon_nstd_flag . _chem_comp.name 'N~1~-{(1S,2S,4S)-1-(cyclohexylmethyl)-4-[(2,2-dimethylpropyl)carbamoyl]-2-hydroxy-5-methylhexyl}-N~2~-(quinolin-2-ylcar bonyl)-L-aspartamide' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms U92163 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C 0PX doub 1 n n C C2 0PX sing 2 n n N1 C2 0PX doub 3 n y N1 C8A 0PX sing 4 n y C2 C3 0PX sing 5 n y C3 C4 0PX doub 6 n y C3 H3 0PX sing 7 n n C4 C4A 0PX sing 8 n y C4 H4 0PX sing 9 n n C4A C5 0PX doub 10 n y C4A C8A 0PX sing 11 n y C5 C6 0PX sing 12 n y C5 H5 0PX sing 13 n n C6 C7 0PX doub 14 n y C6 H6 0PX sing 15 n n C7 C8 0PX sing 16 n y C7 H7 0PX sing 17 n n C8 C8A 0PX doub 18 n y C8 H8 0PX sing 19 n n N CA 0PX sing 20 n n N H 0PX sing 21 n n CA C1 0PX sing 22 n n CA CB 0PX sing 23 n n CA HA 0PX sing 24 n n C1 O1 0PX doub 25 n n CB CG 0PX sing 26 n n CB HB2 0PX sing 27 n n CB HB3 0PX sing 28 n n CG OD1 0PX doub 29 n n CG ND2 0PX sing 30 n n ND2 HD21 0PX sing 31 n n ND2 HD22 0PX sing 32 n n N2 CA1 0PX sing 33 n n N2 H1 0PX sing 34 n n CA1 CB1 0PX sing 35 n n CA1 CH 0PX sing 36 n n CA1 HA1 0PX sing 37 n n CB1 CG1 0PX sing 38 n n CB1 HB21 0PX sing 39 n n CB1 HB31 0PX sing 40 n n CG1 CD1 0PX sing 41 n n CG1 CD2 0PX sing 42 n n CG1 HG 0PX sing 43 n n CD1 CE1 0PX sing 44 n n CD1 HD12 0PX sing 45 n n CD1 HD13 0PX sing 46 n n CD2 CE2 0PX sing 47 n n CD2 HD23 0PX sing 48 n n CD2 HD24 0PX sing 49 n n CE1 CZ 0PX sing 50 n n CE1 HE12 0PX sing 51 n n CE1 HE13 0PX sing 52 n n CE2 CZ 0PX sing 53 n n CE2 HE23 0PX sing 54 n n CE2 HE22 0PX sing 55 n n CZ HZ2 0PX sing 56 n n CZ HZ3 0PX sing 57 n n CH OH 0PX sing 58 n n CH CB11 0PX sing 59 n n CH HH 0PX sing 60 n n OH HO 0PX sing 61 n n CB11 CA' 0PX sing 62 n n CB11 HB11 0PX sing 63 n n CB11 HB12 0PX sing 64 n n CA' CB' 0PX sing 65 n n CA' C9 0PX sing 66 n n CA' HA' 0PX sing 67 n n CB' CG11 0PX sing 68 n n CB' CG2 0PX sing 69 n n CB' HB' 0PX sing 70 n n CG11 HG11 0PX sing 71 n n CG11 HG12 0PX sing 72 n n CG11 HG13 0PX sing 73 n n CG2 HG21 0PX sing 74 n n CG2 HG22 0PX sing 75 n n CG2 HG23 0PX sing 76 n n C9 O2 0PX doub 77 n n N3 C11 0PX sing 78 n n N3 HN2 0PX sing 79 n n C11 C21 0PX sing 80 n n C11 H11 0PX sing 81 n n C11 H12 0PX sing 82 n n C21 C31 0PX sing 83 n n C21 C41 0PX sing 84 n n C21 C51 0PX sing 85 n n C31 H31 0PX sing 86 n n C31 H32 0PX sing 87 n n C31 H33 0PX sing 88 n n C41 H41 0PX sing 89 n n C41 H42 0PX sing 90 n n C41 H43 0PX sing 91 n n C51 H51 0PX sing 92 n n C51 H52 0PX sing 93 n n C51 H53 0PX sing 94 n n C N 0PX sing 95 n n C1 N2 0PX sing 96 n n C9 N3 0PX sing 97 n n # _atom_sites.entry_id 1IVQ _atom_sites.fract_transf_matrix[1][1] 0.031056 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007375 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 0PX A 1 100 1 0PX QNC . D 3 HOH A 1 300 300 HOH HOH . D 3 HOH A 2 301 301 HOH HOH . D 3 HOH A 3 302 302 HOH HOH . D 3 HOH A 4 303 303 HOH HOH . D 3 HOH A 5 304 304 HOH HOH . D 3 HOH A 6 305 305 HOH HOH . D 3 HOH A 7 306 306 HOH HOH . D 3 HOH A 8 307 307 HOH HOH . D 3 HOH A 9 308 308 HOH HOH . D 3 HOH A 10 309 309 HOH HOH . D 3 HOH A 11 311 311 HOH HOH . D 3 HOH A 12 333 333 HOH HOH . D 3 HOH A 13 334 334 HOH HOH . D 3 HOH A 14 335 335 HOH HOH . D 3 HOH A 15 336 336 HOH HOH . D 3 HOH A 16 337 337 HOH HOH . D 3 HOH A 17 339 339 HOH HOH . D 3 HOH A 18 340 340 HOH HOH . D 3 HOH A 19 341 341 HOH HOH . E 3 HOH B 1 310 310 HOH HOH . E 3 HOH B 2 312 312 HOH HOH . E 3 HOH B 3 313 313 HOH HOH . E 3 HOH B 4 314 314 HOH HOH . E 3 HOH B 5 315 315 HOH HOH . E 3 HOH B 6 316 316 HOH HOH . E 3 HOH B 7 317 317 HOH HOH . E 3 HOH B 8 318 318 HOH HOH . E 3 HOH B 9 319 319 HOH HOH . E 3 HOH B 10 320 320 HOH HOH . E 3 HOH B 11 321 321 HOH HOH . E 3 HOH B 12 322 322 HOH HOH . E 3 HOH B 13 323 323 HOH HOH . E 3 HOH B 14 324 324 HOH HOH . E 3 HOH B 15 325 325 HOH HOH . E 3 HOH B 16 326 326 HOH HOH . E 3 HOH B 17 327 327 HOH HOH . E 3 HOH B 18 328 328 HOH HOH . E 3 HOH B 19 329 329 HOH HOH . E 3 HOH B 20 330 330 HOH HOH . E 3 HOH B 21 331 331 HOH HOH . E 3 HOH B 22 332 332 HOH HOH . E 3 HOH B 23 338 338 HOH HOH . E 3 HOH B 24 342 342 HOH HOH . E 3 HOH B 25 343 343 HOH HOH . E 3 HOH B 26 344 344 HOH HOH . E 3 HOH B 27 345 345 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O 0PX . . . C 2 -0.705 23.855 23.491 1 8.92 ? O 0PX 100 A 1 HETATM 2 C C 0PX . . . C 2 -1.462 22.867 23.443 1 7.96 ? C 0PX 100 A 1 HETATM 3 N N1 0PX . . . C 2 -3.831 21.855 23.018 1 7.33 ? N1 0PX 100 A 1 HETATM 4 C C2 0PX . . . C 2 -2.945 22.989 23.379 1 7.78 ? C2 0PX 100 A 1 HETATM 5 C C3 0PX . . . C 2 -3.773 24.189 23.693 1 7.58 ? C3 0PX 100 A 1 HETATM 6 C C4 0PX . . . C 2 -4.771 24.483 22.821 1 7.02 ? C4 0PX 100 A 1 HETATM 7 C C4A 0PX . . . C 2 -5.635 23.316 22.561 1 6.26 ? C4A 0PX 100 A 1 HETATM 8 C C5 0PX . . . C 2 -6.954 23.493 22.193 1 6.38 ? C5 0PX 100 A 1 HETATM 9 C C6 0PX . . . C 2 -7.78 22.407 21.968 1 6.21 ? C6 0PX 100 A 1 HETATM 10 C C7 0PX . . . C 2 -7.259 21.13 22.065 1 6.37 ? C7 0PX 100 A 1 HETATM 11 C C8 0PX . . . C 2 -5.924 20.95 22.391 1 6.17 ? C8 0PX 100 A 1 HETATM 12 C C8A 0PX . . . C 2 -5.119 22.033 22.65 1 6.27 ? C8A 0PX 100 A 1 HETATM 13 N N 0PX . . . C 2 -1.037 21.628 23.459 1 8.18 ? N 0PX 100 A 1 HETATM 14 C CA 0PX . . . C 2 0.377 21.199 23.522 1 8.29 ? CA 0PX 100 A 1 HETATM 15 C C1 0PX . . . C 2 0.487 20.184 22.363 1 8.77 ? C1 0PX 100 A 1 HETATM 16 O O1 0PX . . . C 2 0.027 19.036 22.464 1 8.06 ? O1 0PX 100 A 1 HETATM 17 C CB 0PX . . . C 2 0.717 20.643 24.889 1 7.92 ? CB 0PX 100 A 1 HETATM 18 C CG 0PX . . . C 2 0.471 21.636 26.009 1 7.93 ? CG 0PX 100 A 1 HETATM 19 O OD1 0PX . . . C 2 1.406 22.393 26.326 1 7.79 ? OD1 0PX 100 A 1 HETATM 20 N ND2 0PX . . . C 2 -0.724 21.637 26.611 1 7.37 ? ND2 0PX 100 A 1 HETATM 21 N N2 0PX . . . C 2 1.058 20.752 21.303 1 9.57 ? N2 0PX 100 A 1 HETATM 22 C CA1 0PX . . . C 2 1.249 20.059 20.024 1 10.23 ? CA1 0PX 100 A 1 HETATM 23 C CB1 0PX . . . C 2 0.577 20.49 18.885 1 10.52 ? CB1 0PX 100 A 1 HETATM 24 C CG1 0PX . . . C 2 -0.883 20.889 18.75 1 10.8 ? CG1 0PX 100 A 1 HETATM 25 C CD1 0PX . . . C 2 -1.298 22.228 19.378 1 11.12 ? CD1 0PX 100 A 1 HETATM 26 C CD2 0PX . . . C 2 -1.963 19.811 18.923 1 10.85 ? CD2 0PX 100 A 1 HETATM 27 C CE1 0PX . . . C 2 -2.719 22.689 19.01 1 11.02 ? CE1 0PX 100 A 1 HETATM 28 C CE2 0PX . . . C 2 -3.341 20.319 18.444 1 10.59 ? CE2 0PX 100 A 1 HETATM 29 C CZ 0PX . . . C 2 -3.775 21.581 19.216 1 10.84 ? CZ 0PX 100 A 1 HETATM 30 C CH 0PX . . . C 2 2.68 19.511 19.899 1 10.44 ? CH 0PX 100 A 1 HETATM 31 O OH 0PX . . . C 2 3.599 20.298 20.219 1 9.92 ? OH 0PX 100 A 1 HETATM 32 C CB11 0PX . . . C 2 2.681 18.185 20.632 1 11.3 ? CB11 0PX 100 A 1 HETATM 33 C CA' 0PX . . . C 2 3.704 17.161 20.034 1 12.67 ? CA' 0PX 100 A 1 HETATM 34 C CB' 0PX . . . C 2 4.339 16.41 21.275 1 12.54 ? CB' 0PX 100 A 1 HETATM 35 C CG11 0PX . . . C 2 5.77 15.921 21.261 1 12.17 ? CG11 0PX 100 A 1 HETATM 36 C CG2 0PX . . . C 2 3.404 15.54 22.086 1 11.95 ? CG2 0PX 100 A 1 HETATM 37 C C9 0PX . . . C 2 2.947 16.158 19.144 1 13.58 ? C9 0PX 100 A 1 HETATM 38 O O2 0PX . . . C 2 1.928 15.552 19.543 1 14.76 ? O2 0PX 100 A 1 HETATM 39 N N3 0PX . . . C 2 3.438 15.924 17.951 1 14.17 ? N3 0PX 100 A 1 HETATM 40 C C11 0PX . . . C 2 2.834 14.96 17.003 1 14.14 ? C11 0PX 100 A 1 HETATM 41 C C21 0PX . . . C 2 1.873 15.72 16.032 1 14.17 ? C21 0PX 100 A 1 HETATM 42 C C31 0PX . . . C 2 2.583 16.856 15.266 1 14.61 ? C31 0PX 100 A 1 HETATM 43 C C41 0PX . . . C 2 0.842 16.372 16.977 1 14.66 ? C41 0PX 100 A 1 HETATM 44 C C51 0PX . . . C 2 1.279 14.773 14.996 1 14.12 ? C51 0PX 100 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #