data_1IXJ # _model_server_result.job_id vl2Mymh18HkxCGvSD1sIPA _model_server_result.datetime_utc '2024-11-27 03:35:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ixj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":12}' # _entry.id 1IXJ # _exptl.entry_id 1IXJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 161.116 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT HEXAMMINE(III)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1IXJ _cell.length_a 53.4 _cell.length_b 53.4 _cell.length_c 54 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IXJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B MG MG . A MG 10 1_555 E O HOH . A HOH 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc2 B MG MG . A MG 10 1_555 E O HOH . A HOH 20 7_545 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc3 B MG MG . A MG 10 1_555 E O HOH . A HOH 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc4 B MG MG . A MG 10 1_555 E O HOH . A HOH 21 7_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc5 B MG MG . A MG 10 1_555 E O HOH . A HOH 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc6 B MG MG . A MG 10 1_555 E O HOH . A HOH 22 7_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc7 B MG MG . A MG 10 1_555 E O HOH . A HOH 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc8 B MG MG . A MG 10 1_555 E O HOH . A HOH 23 7_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc9 B MG MG . A MG 10 1_555 E O HOH . A HOH 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc10 B MG MG . A MG 10 1_555 E O HOH . A HOH 24 7_545 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc11 B MG MG . A MG 10 1_555 E O HOH . A HOH 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc12 B MG MG . A MG 10 1_555 E O HOH . A HOH 25 7_545 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc13 C MG MG . A MG 11 1_555 E O HOH . A HOH 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc14 C MG MG . A MG 11 1_555 E O HOH . A HOH 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc15 C MG MG . A MG 11 1_555 E O HOH . A HOH 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc16 C MG MG . A MG 11 1_555 E O HOH . A HOH 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc17 C MG MG . A MG 11 1_555 E O HOH . A HOH 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc18 C MG MG . A MG 11 1_555 E O HOH . A HOH 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? hydrog TYPE_15_PAIR hydrog1 A N4 DC 2 A DC 2 1_555 A O2 DC 2 A DC 2 8_666 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_15_PAIR hydrog2 A O2 DC 2 A DC 2 1_555 A N4 DC 2 A DC 2 8_666 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_4_PAIR hydrog3 A N2 DG 3 A DG 3 1_555 A N3 DG 3 A DG 3 8_666 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_4_PAIR hydrog4 A N3 DG 3 A DG 3 1_555 A N2 DG 3 A DG 3 8_666 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_2_PAIR hydrog5 A N6 DA 4 A DA 4 1_555 A N7 DA 4 A DA 4 8_666 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_2_PAIR hydrog6 A N7 DA 4 A DA 4 1_555 A N6 DA 4 A DA 4 8_666 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_1_PAIR hydrog7 A N1 DA 5 A DA 5 1_555 A N6 DA 5 A DA 5 8_666 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_1_PAIR hydrog8 A N6 DA 5 A DA 5 1_555 A N1 DA 5 A DA 5 8_666 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Co H18 N6 3' _chem_comp.formula_weight 161.116 _chem_comp.id NCO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT HEXAMMINE(III)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CO N1 NCO sing 152 n n CO N2 NCO sing 153 n n CO N3 NCO sing 154 n n CO N4 NCO sing 155 n n CO N5 NCO sing 156 n n CO N6 NCO sing 157 n n N1 HN11 NCO sing 158 n n N1 HN12 NCO sing 159 n n N1 HN13 NCO sing 160 n n N2 HN21 NCO sing 161 n n N2 HN22 NCO sing 162 n n N2 HN23 NCO sing 163 n n N3 HN31 NCO sing 164 n n N3 HN32 NCO sing 165 n n N3 HN33 NCO sing 166 n n N4 HN41 NCO sing 167 n n N4 HN42 NCO sing 168 n n N4 HN43 NCO sing 169 n n N5 HN51 NCO sing 170 n n N5 HN52 NCO sing 171 n n N5 HN53 NCO sing 172 n n N6 HN61 NCO sing 173 n n N6 HN62 NCO sing 174 n n N6 HN63 NCO sing 175 n n # _atom_sites.entry_id 1IXJ _atom_sites.fract_transf_matrix[1][1] 0.018727 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018727 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018519 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 10 9 MG MO6 . C 2 MG A 1 11 10 MG MO6 . D 3 NCO A 1 12 8 NCO NCO . E 4 HOH A 1 13 1 HOH HOH . E 4 HOH A 2 14 2 HOH HOH . E 4 HOH A 3 15 3 HOH HOH . E 4 HOH A 4 16 4 HOH HOH . E 4 HOH A 5 17 5 HOH HOH . E 4 HOH A 6 18 6 HOH HOH . E 4 HOH A 7 19 7 HOH HOH . E 4 HOH A 8 20 9 HOH MO6 . E 4 HOH A 9 21 9 HOH MO6 . E 4 HOH A 10 22 9 HOH MO6 . E 4 HOH A 11 23 9 HOH MO6 . E 4 HOH A 12 24 9 HOH MO6 . E 4 HOH A 13 25 9 HOH MO6 . E 4 HOH A 14 26 10 HOH MO6 . E 4 HOH A 15 27 10 HOH MO6 . E 4 HOH A 16 28 10 HOH MO6 . E 4 HOH A 17 29 10 HOH MO6 . E 4 HOH A 18 30 10 HOH MO6 . E 4 HOH A 19 31 10 HOH MO6 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CO CO NCO . . . D 3 40.07 21.248 20.273 0.5 54.8 ? CO NCO 12 A 1 HETATM 2 N N1 NCO . . . D 3 39.841 21.259 18.335 0.5 53.2 ? N1 NCO 12 A 1 HETATM 3 N N2 NCO . . . D 3 41.437 22.618 20.087 0.5 54.2 ? N2 NCO 12 A 1 HETATM 4 N N3 NCO . . . D 3 41.432 19.872 20.087 0.5 54.8 ? N3 NCO 12 A 1 HETATM 5 N N4 NCO . . . D 3 38.714 19.875 20.424 0.5 54.8 ? N4 NCO 12 A 1 HETATM 6 N N5 NCO . . . D 3 38.709 22.62 20.424 0.5 54.2 ? N5 NCO 12 A 1 HETATM 7 N N6 NCO . . . D 3 40.332 21.247 22.201 0.5 53.2 ? N6 NCO 12 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 7 #