data_1IXS # _model_server_result.job_id uPHJEATfmn_Zx8kF8y5gQw _model_server_result.datetime_utc '2024-11-22 16:42:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ixs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":319}' # _entry.id 1IXS # _exptl.entry_id 1IXS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1IXS _cell.length_a 102.06 _cell.length_b 102.06 _cell.length_c 137.75 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IXS _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 1IXS _atom_sites.fract_transf_matrix[1][1] 0.009798 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009798 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00726 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id ANP _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 319 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id ANP _pdbx_nonpoly_scheme.auth_mon_id ANP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 11.367 44.132 37.297 1 59.81 ? PG ANP 319 B 1 HETATM 2 O O1G ANP . . . C 3 12.6 43.272 37.569 1 59.81 ? O1G ANP 319 B 1 HETATM 3 O O2G ANP . . . C 3 10.41 44.231 38.445 1 59.81 ? O2G ANP 319 B 1 HETATM 4 O O3G ANP . . . C 3 11.845 45.558 36.847 1 59.81 ? O3G ANP 319 B 1 HETATM 5 P PB ANP . . . C 3 9.846 41.982 35.71 1 59.81 ? PB ANP 319 B 1 HETATM 6 O O1B ANP . . . C 3 9.138 41.482 36.926 1 59.81 ? O1B ANP 319 B 1 HETATM 7 O O2B ANP . . . C 3 9.009 42.132 34.498 1 59.81 ? O2B ANP 319 B 1 HETATM 8 N N3B ANP . . . C 3 10.604 43.463 35.973 1 59.81 ? N3B ANP 319 B 1 HETATM 9 P PA ANP . . . C 3 12.25 40.356 36.242 1 59.81 ? PA ANP 319 B 1 HETATM 10 O O1A ANP . . . C 3 13.584 40.731 35.768 1 59.81 ? O1A ANP 319 B 1 HETATM 11 O O2A ANP . . . C 3 12.061 40.775 37.627 1 59.81 ? O2A ANP 319 B 1 HETATM 12 O O3A ANP . . . C 3 11.055 41.001 35.337 1 59.81 ? O3A ANP 319 B 1 HETATM 13 O O5' ANP . . . C 3 12.104 38.752 36.137 1 59.81 ? O5' ANP 319 B 1 HETATM 14 C C5' ANP . . . C 3 12.206 37.975 34.856 1 59.81 ? C5' ANP 319 B 1 HETATM 15 C C4' ANP . . . C 3 10.981 37.017 34.795 1 59.81 ? C4' ANP 319 B 1 HETATM 16 O O4' ANP . . . C 3 10.935 36.038 35.878 1 59.81 ? O4' ANP 319 B 1 HETATM 17 C C3' ANP . . . C 3 9.611 37.729 34.843 1 59.81 ? C3' ANP 319 B 1 HETATM 18 O O3' ANP . . . C 3 9.24 38.266 33.588 1 59.81 ? O3' ANP 319 B 1 HETATM 19 C C2' ANP . . . C 3 8.653 36.636 35.355 1 59.81 ? C2' ANP 319 B 1 HETATM 20 O O2' ANP . . . C 3 8.076 35.974 34.241 1 59.81 ? O2' ANP 319 B 1 HETATM 21 C C1' ANP . . . C 3 9.56 35.768 36.232 1 59.81 ? C1' ANP 319 B 1 HETATM 22 N N9 ANP . . . C 3 9.313 36 37.712 1 53.14 ? N9 ANP 319 B 1 HETATM 23 C C8 ANP . . . C 3 9.732 37.045 38.507 1 53.14 ? C8 ANP 319 B 1 HETATM 24 N N7 ANP . . . C 3 9.323 36.911 39.78 1 53.14 ? N7 ANP 319 B 1 HETATM 25 C C5 ANP . . . C 3 8.643 35.788 39.813 1 53.14 ? C5 ANP 319 B 1 HETATM 26 C C6 ANP . . . C 3 7.95 35.101 40.894 1 53.14 ? C6 ANP 319 B 1 HETATM 27 N N6 ANP . . . C 3 7.942 35.615 42.118 1 53.14 ? N6 ANP 319 B 1 HETATM 28 N N1 ANP . . . C 3 7.294 33.89 40.626 1 53.14 ? N1 ANP 319 B 1 HETATM 29 C C2 ANP . . . C 3 7.336 33.394 39.321 1 53.14 ? C2 ANP 319 B 1 HETATM 30 N N3 ANP . . . C 3 7.945 33.947 38.252 1 53.14 ? N3 ANP 319 B 1 HETATM 31 C C4 ANP . . . C 3 8.588 35.154 38.559 1 53.14 ? C4 ANP 319 B 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #