data_1IYK # _model_server_result.job_id c5yJBp2ohe-xgPc2urJbUw _model_server_result.datetime_utc '2024-10-24 04:32:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1iyk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 1IYK # _exptl.entry_id 1IYK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 596.804 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[CYCLOHEXYLETHYL]-[[[[4-[2-METHYL-1-IMIDAZOLYL-BUTYL]PHENYL]ACETYL]-SERYL]-LYSINYL]-AMINE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1IYK _cell.length_a 58.696 _cell.length_b 95.334 _cell.length_c 176.549 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IYK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA,PQS dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 A,B,C,D,E,F,G,H 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C33 H52 N6 O4' _chem_comp.formula_weight 596.804 _chem_comp.id MIM _chem_comp.mon_nstd_flag . _chem_comp.name '[CYCLOHEXYLETHYL]-[[[[4-[2-METHYL-1-IMIDAZOLYL-BUTYL]PHENYL]ACETYL]-SERYL]-LYSINYL]-AMINE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CIB CBB MIM sing 237 n n CIB HIB1 MIM sing 238 n n CIB HIB2 MIM sing 239 n n CIB HIB3 MIM sing 240 n n NGB CBB MIM doub 241 n y NGB CDB MIM sing 242 n y CBB NAB MIM sing 243 n y NAB CEB MIM sing 244 n y NAB C9B MIM sing 245 n n CEB CDB MIM doub 246 n y CEB HEB MIM sing 247 n n CDB HDB MIM sing 248 n n C9B C8B MIM sing 249 n n C9B H9B1 MIM sing 250 n n C9B H9B2 MIM sing 251 n n C8B C7B MIM sing 252 n n C8B H8B1 MIM sing 253 n n C8B H8B2 MIM sing 254 n n C7B C6B MIM sing 255 n n C7B H7B1 MIM sing 256 n n C7B H7B2 MIM sing 257 n n C6B C3B MIM sing 258 n n C6B H6B1 MIM sing 259 n n C6B H6B2 MIM sing 260 n n C3B C2B MIM doub 261 n y C3B C4B MIM sing 262 n y C2B C1B MIM sing 263 n y C2B H2B MIM sing 264 n n C1B C0B MIM doub 265 n y C1B H1B MIM sing 266 n n C0B C5B MIM sing 267 n y C0B CAB MIM sing 268 n n C5B C4B MIM doub 269 n y C5B H5B MIM sing 270 n n C4B H4B MIM sing 271 n n CAB CB MIM sing 272 n n CAB HAB1 MIM sing 273 n n CAB HAB2 MIM sing 274 n n CB OB MIM doub 275 n n CB NS MIM sing 276 n n NS CAS MIM sing 277 n n NS HNS MIM sing 278 n n CAS CS MIM sing 279 n n CAS CBS MIM sing 280 n n CAS HAS MIM sing 281 n n CS OS MIM doub 282 n n CS NK MIM sing 283 n n CBS OGS MIM sing 284 n n CBS HBS1 MIM sing 285 n n CBS HBS2 MIM sing 286 n n OGS HOGS MIM sing 287 n n NK CAK MIM sing 288 n n NK HNK MIM sing 289 n n CAK CK MIM sing 290 n n CAK CBK MIM sing 291 n n CAK HAK MIM sing 292 n n CK OK MIM doub 293 n n CK NY MIM sing 294 n n CBK CGK MIM sing 295 n n CBK HBK1 MIM sing 296 n n CBK HBK2 MIM sing 297 n n CGK CDK MIM sing 298 n n CGK HGK1 MIM sing 299 n n CGK HGK2 MIM sing 300 n n CDK CEK MIM sing 301 n n CDK HDK1 MIM sing 302 n n CDK HDK2 MIM sing 303 n n CEK NZK MIM sing 304 n n CEK HEK1 MIM sing 305 n n CEK HEK2 MIM sing 306 n n NZK HNZ1 MIM sing 307 n n NZK HNZ2 MIM sing 308 n n NY CAY MIM sing 309 n n NY HNY MIM sing 310 n n CAY CBY MIM sing 311 n n CAY HAY1 MIM sing 312 n n CAY HAY2 MIM sing 313 n n CBY CGY MIM sing 314 n n CBY HBY1 MIM sing 315 n n CBY HBY2 MIM sing 316 n n CGY CKY MIM sing 317 n n CGY CDY MIM sing 318 n n CGY HGY MIM sing 319 n n CKY CHY MIM sing 320 n n CKY HKY1 MIM sing 321 n n CKY HKY2 MIM sing 322 n n CHY CZY MIM sing 323 n n CHY HHY1 MIM sing 324 n n CHY HHY2 MIM sing 325 n n CZY CEY MIM sing 326 n n CZY HZY1 MIM sing 327 n n CZY HZY2 MIM sing 328 n n CEY CDY MIM sing 329 n n CEY HEY1 MIM sing 330 n n CEY HEY2 MIM sing 331 n n CDY HDY1 MIM sing 332 n n CDY HDY2 MIM sing 333 n n # _atom_sites.entry_id 1IYK _atom_sites.fract_transf_matrix[1][1] 0.017037 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010489 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005664 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MYA A 1 501 501 MYA MYA . D 3 MIM A 1 502 502 MIM MIM . E 2 MYA B 1 1501 501 MYA MYA . F 3 MIM B 1 1502 502 MIM MIM . G 4 HOH A 1 503 1 HOH HOH . G 4 HOH A 2 504 2 HOH HOH . G 4 HOH A 3 505 4 HOH HOH . G 4 HOH A 4 506 5 HOH HOH . G 4 HOH A 5 507 8 HOH HOH . G 4 HOH A 6 508 10 HOH HOH . G 4 HOH A 7 509 18 HOH HOH . G 4 HOH A 8 510 21 HOH HOH . G 4 HOH A 9 511 22 HOH HOH . G 4 HOH A 10 512 24 HOH HOH . G 4 HOH A 11 513 27 HOH HOH . G 4 HOH A 12 514 31 HOH HOH . G 4 HOH A 13 515 34 HOH HOH . G 4 HOH A 14 516 36 HOH HOH . G 4 HOH A 15 517 37 HOH HOH . G 4 HOH A 16 518 41 HOH HOH . G 4 HOH A 17 519 42 HOH HOH . G 4 HOH A 18 520 43 HOH HOH . G 4 HOH A 19 521 45 HOH HOH . G 4 HOH A 20 522 47 HOH HOH . G 4 HOH A 21 523 48 HOH HOH . G 4 HOH A 22 524 49 HOH HOH . G 4 HOH A 23 525 50 HOH HOH . G 4 HOH A 24 526 52 HOH HOH . G 4 HOH A 25 527 53 HOH HOH . G 4 HOH A 26 528 55 HOH HOH . G 4 HOH A 27 529 56 HOH HOH . G 4 HOH A 28 530 59 HOH HOH . G 4 HOH A 29 531 61 HOH HOH . G 4 HOH A 30 532 62 HOH HOH . G 4 HOH A 31 533 63 HOH HOH . G 4 HOH A 32 534 64 HOH HOH . G 4 HOH A 33 535 68 HOH HOH . G 4 HOH A 34 536 71 HOH HOH . G 4 HOH A 35 537 76 HOH HOH . G 4 HOH A 36 538 79 HOH HOH . G 4 HOH A 37 539 81 HOH HOH . G 4 HOH A 38 540 83 HOH HOH . G 4 HOH A 39 541 85 HOH HOH . G 4 HOH A 40 542 90 HOH HOH . G 4 HOH A 41 543 93 HOH HOH . G 4 HOH A 42 544 96 HOH HOH . G 4 HOH A 43 545 97 HOH HOH . G 4 HOH A 44 546 108 HOH HOH . G 4 HOH A 45 547 109 HOH HOH . G 4 HOH A 46 548 114 HOH HOH . G 4 HOH A 47 549 118 HOH HOH . G 4 HOH A 48 550 119 HOH HOH . G 4 HOH A 49 551 121 HOH HOH . G 4 HOH A 50 552 122 HOH HOH . G 4 HOH A 51 553 123 HOH HOH . G 4 HOH A 52 554 132 HOH HOH . G 4 HOH A 53 555 143 HOH HOH . G 4 HOH A 54 556 148 HOH HOH . G 4 HOH A 55 557 149 HOH HOH . G 4 HOH A 56 558 161 HOH HOH . G 4 HOH A 57 559 162 HOH HOH . G 4 HOH A 58 560 163 HOH HOH . G 4 HOH A 59 561 164 HOH HOH . G 4 HOH A 60 562 165 HOH HOH . G 4 HOH A 61 563 169 HOH HOH . G 4 HOH A 62 564 177 HOH HOH . G 4 HOH A 63 565 178 HOH HOH . G 4 HOH A 64 566 180 HOH HOH . G 4 HOH A 65 567 194 HOH HOH . H 4 HOH B 1 1503 6 HOH HOH . H 4 HOH B 2 1504 9 HOH HOH . H 4 HOH B 3 1505 11 HOH HOH . H 4 HOH B 4 1506 12 HOH HOH . H 4 HOH B 5 1507 13 HOH HOH . H 4 HOH B 6 1508 15 HOH HOH . H 4 HOH B 7 1509 16 HOH HOH . H 4 HOH B 8 1510 17 HOH HOH . H 4 HOH B 9 1511 23 HOH HOH . H 4 HOH B 10 1512 25 HOH HOH . H 4 HOH B 11 1513 26 HOH HOH . H 4 HOH B 12 1514 28 HOH HOH . H 4 HOH B 13 1515 29 HOH HOH . H 4 HOH B 14 1516 30 HOH HOH . H 4 HOH B 15 1517 32 HOH HOH . H 4 HOH B 16 1518 33 HOH HOH . H 4 HOH B 17 1519 35 HOH HOH . H 4 HOH B 18 1520 38 HOH HOH . H 4 HOH B 19 1521 39 HOH HOH . H 4 HOH B 20 1522 40 HOH HOH . H 4 HOH B 21 1523 44 HOH HOH . H 4 HOH B 22 1524 51 HOH HOH . H 4 HOH B 23 1525 54 HOH HOH . H 4 HOH B 24 1526 57 HOH HOH . H 4 HOH B 25 1527 58 HOH HOH . H 4 HOH B 26 1528 60 HOH HOH . H 4 HOH B 27 1529 65 HOH HOH . H 4 HOH B 28 1530 66 HOH HOH . H 4 HOH B 29 1531 67 HOH HOH . H 4 HOH B 30 1532 69 HOH HOH . H 4 HOH B 31 1533 72 HOH HOH . H 4 HOH B 32 1534 73 HOH HOH . H 4 HOH B 33 1535 75 HOH HOH . H 4 HOH B 34 1536 77 HOH HOH . H 4 HOH B 35 1537 80 HOH HOH . H 4 HOH B 36 1538 87 HOH HOH . H 4 HOH B 37 1539 94 HOH HOH . H 4 HOH B 38 1540 99 HOH HOH . H 4 HOH B 39 1541 103 HOH HOH . H 4 HOH B 40 1542 104 HOH HOH . H 4 HOH B 41 1543 105 HOH HOH . H 4 HOH B 42 1544 120 HOH HOH . H 4 HOH B 43 1545 124 HOH HOH . H 4 HOH B 44 1546 127 HOH HOH . H 4 HOH B 45 1547 131 HOH HOH . H 4 HOH B 46 1548 134 HOH HOH . H 4 HOH B 47 1549 138 HOH HOH . H 4 HOH B 48 1550 140 HOH HOH . H 4 HOH B 49 1551 141 HOH HOH . H 4 HOH B 50 1552 145 HOH HOH . H 4 HOH B 51 1553 146 HOH HOH . H 4 HOH B 52 1554 156 HOH HOH . H 4 HOH B 53 1555 167 HOH HOH . H 4 HOH B 54 1556 170 HOH HOH . H 4 HOH B 55 1557 183 HOH HOH . H 4 HOH B 56 1558 184 HOH HOH . H 4 HOH B 57 1559 189 HOH HOH . H 4 HOH B 58 1560 196 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CIB MIM . . . D 3 21.282 42.443 31.886 1 45.1 ? CIB MIM 502 A 1 HETATM 2 N NGB MIM . . . D 3 19.804 40.669 30.992 1 40.69 ? NGB MIM 502 A 1 HETATM 3 C CBB MIM . . . D 3 19.972 41.861 31.515 1 42.28 ? CBB MIM 502 A 1 HETATM 4 N NAB MIM . . . D 3 18.755 42.513 31.669 1 42.38 ? NAB MIM 502 A 1 HETATM 5 C CEB MIM . . . D 3 17.79 41.652 31.205 1 42.43 ? CEB MIM 502 A 1 HETATM 6 C CDB MIM . . . D 3 18.475 40.549 30.806 1 42.19 ? CDB MIM 502 A 1 HETATM 7 C C9B MIM . . . D 3 18.396 43.854 32.205 1 40.83 ? C9B MIM 502 A 1 HETATM 8 C C8B MIM . . . D 3 18.174 44.843 31.057 1 34.17 ? C8B MIM 502 A 1 HETATM 9 C C7B MIM . . . D 3 17.395 46.061 31.56 1 32.55 ? C7B MIM 502 A 1 HETATM 10 C C6B MIM . . . D 3 18.027 46.783 32.765 1 27.93 ? C6B MIM 502 A 1 HETATM 11 C C3B MIM . . . D 3 19.45 47.223 32.529 1 25.26 ? C3B MIM 502 A 1 HETATM 12 C C2B MIM . . . D 3 20.476 46.486 33.138 1 21.55 ? C2B MIM 502 A 1 HETATM 13 C C1B MIM . . . D 3 21.795 46.87 32.938 1 23.04 ? C1B MIM 502 A 1 HETATM 14 C C0B MIM . . . D 3 22.106 47.993 32.139 1 24.02 ? C0B MIM 502 A 1 HETATM 15 C C5B MIM . . . D 3 21.069 48.728 31.531 1 21.92 ? C5B MIM 502 A 1 HETATM 16 C C4B MIM . . . D 3 19.74 48.342 31.731 1 22.33 ? C4B MIM 502 A 1 HETATM 17 C CAB MIM . . . D 3 23.561 48.411 31.943 1 24.32 ? CAB MIM 502 A 1 HETATM 18 C CB MIM . . . D 3 24.043 49.349 33.044 1 26.51 ? CB MIM 502 A 1 HETATM 19 O OB MIM . . . D 3 23.546 50.474 33.184 1 28.55 ? OB MIM 502 A 1 HETATM 20 N NS MIM . . . D 3 24.988 48.909 33.812 1 25.49 ? NS MIM 502 A 1 HETATM 21 C CAS MIM . . . D 3 25.476 49.701 34.88 1 24.31 ? CAS MIM 502 A 1 HETATM 22 C CS MIM . . . D 3 26.944 50.034 34.708 1 26.12 ? CS MIM 502 A 1 HETATM 23 O OS MIM . . . D 3 27.664 49.229 34.11 1 23.11 ? OS MIM 502 A 1 HETATM 24 C CBS MIM . . . D 3 25.243 48.935 36.179 1 23.08 ? CBS MIM 502 A 1 HETATM 25 O OGS MIM . . . D 3 25.809 49.643 37.25 1 23.34 ? OGS MIM 502 A 1 HETATM 26 N NK MIM . . . D 3 27.363 51.176 35.205 1 26.48 ? NK MIM 502 A 1 HETATM 27 C CAK MIM . . . D 3 28.765 51.535 35.142 1 27.94 ? CAK MIM 502 A 1 HETATM 28 C CK MIM . . . D 3 29.163 52.054 36.489 1 28.34 ? CK MIM 502 A 1 HETATM 29 O OK MIM . . . D 3 28.285 52.338 37.312 1 28.26 ? OK MIM 502 A 1 HETATM 30 C CBK MIM . . . D 3 29.145 52.491 33.984 1 28.34 ? CBK MIM 502 A 1 HETATM 31 C CGK MIM . . . D 3 28.402 53.856 34.032 1 29.02 ? CGK MIM 502 A 1 HETATM 32 C CDK MIM . . . D 3 28.848 54.741 32.849 1 28.91 ? CDK MIM 502 A 1 HETATM 33 C CEK MIM . . . D 3 28.003 56.007 32.761 1 27.44 ? CEK MIM 502 A 1 HETATM 34 N NZK MIM . . . D 3 26.595 55.605 32.657 1 27.88 ? NZK MIM 502 A 1 HETATM 35 N NY MIM . . . D 3 30.432 52.172 36.702 1 32.21 ? NY MIM 502 A 1 HETATM 36 C CAY MIM . . . D 3 30.998 52.642 37.963 1 33.55 ? CAY MIM 502 A 1 HETATM 37 C CBY MIM . . . D 3 32.264 51.812 38.243 1 36.01 ? CBY MIM 502 A 1 HETATM 38 C CGY MIM . . . D 3 32.914 52.102 39.612 1 39.52 ? CGY MIM 502 A 1 HETATM 39 C CKY MIM . . . D 3 31.921 51.941 40.799 1 39.5 ? CKY MIM 502 A 1 HETATM 40 C CHY MIM . . . D 3 32.652 52.223 42.159 1 39.69 ? CHY MIM 502 A 1 HETATM 41 C CZY MIM . . . D 3 33.873 51.303 42.36 1 37.97 ? CZY MIM 502 A 1 HETATM 42 C CEY MIM . . . D 3 34.851 51.459 41.175 1 38.96 ? CEY MIM 502 A 1 HETATM 43 C CDY MIM . . . D 3 34.144 51.176 39.834 1 38.02 ? CDY MIM 502 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #