data_1IYO # _model_server_result.job_id LOcXyWtOnEzXS6HQxT8-xQ _model_server_result.datetime_utc '2024-10-12 03:23:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1iyo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 1IYO # _exptl.entry_id 1IYO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 397.429 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CEFOTAXIME,C3' cleaved,open,bound form" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1IYO _cell.length_a 72.581 _cell.length_b 72.581 _cell.length_c 98.179 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IYO _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 44 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 70 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id C8 _struct_conn.ptnr2_label_comp_id CEF _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CEF _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.351 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H15 N5 O5 S2' _chem_comp.formula_weight 397.429 _chem_comp.id CEF _chem_comp.mon_nstd_flag . _chem_comp.name "CEFOTAXIME, C3' cleaved, open, bound form" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 CEF sing 70 n n S1 C6 CEF sing 71 n n C1 C2 CEF sing 72 n n C1 H1 CEF sing 73 n n C1 H2 CEF sing 74 n n C2 C3 CEF doub 75 n n C2 C4 CEF sing 76 n n C3 H3 CEF sing 77 n n C3 H4 CEF sing 78 n n C4 C5 CEF sing 79 n n C4 N1 CEF doub 80 n n C5 O1 CEF doub 81 n n C5 O2 CEF sing 82 n n O2 H5 CEF sing 83 n n N1 C6 CEF sing 84 n n C6 C7 CEF sing 85 n n C6 H6 CEF sing 86 n n C7 C8 CEF sing 87 n n C7 N2 CEF sing 88 n n C7 H7 CEF sing 89 n n C8 O3 CEF doub 90 n n C8 H8 CEF sing 91 n n N2 C9 CEF sing 92 n n N2 H9 CEF sing 93 n n C9 O4 CEF doub 94 n n C9 C10 CEF sing 95 n n C10 N3 CEF doub 96 z n C10 C12 CEF sing 97 n n N3 O5 CEF sing 98 n n O5 C11 CEF sing 99 n n C11 H10 CEF sing 100 n n C11 H11 CEF sing 101 n n C11 H12 CEF sing 102 n n C12 C13 CEF doub 103 n y C12 N5 CEF sing 104 n y C13 S2 CEF sing 105 n y C13 H13 CEF sing 106 n n S2 C14 CEF sing 107 n y C14 N4 CEF sing 108 n n C14 N5 CEF doub 109 n y N4 H14 CEF sing 110 n n N4 H15 CEF sing 111 n n # _atom_sites.entry_id 1IYO _atom_sites.fract_transf_matrix[1][1] 0.013778 _atom_sites.fract_transf_matrix[1][2] 0.007955 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015909 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010185 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 401 SO4 SO4 . C 2 SO4 A 1 402 402 SO4 SO4 . D 2 SO4 A 1 403 403 SO4 SO4 . E 3 CEF A 1 301 301 CEF CEF . F 4 HOH A 1 501 501 HOH HOH . F 4 HOH A 2 502 502 HOH HOH . F 4 HOH A 3 503 503 HOH HOH . F 4 HOH A 4 504 504 HOH HOH . F 4 HOH A 5 505 505 HOH HOH . F 4 HOH A 6 506 506 HOH HOH . F 4 HOH A 7 507 507 HOH HOH . F 4 HOH A 8 508 508 HOH HOH . F 4 HOH A 9 509 509 HOH HOH . F 4 HOH A 10 510 510 HOH HOH . F 4 HOH A 11 511 511 HOH HOH . F 4 HOH A 12 512 512 HOH HOH . F 4 HOH A 13 513 513 HOH HOH . F 4 HOH A 14 514 514 HOH HOH . F 4 HOH A 15 515 515 HOH HOH . F 4 HOH A 16 516 516 HOH HOH . F 4 HOH A 17 517 517 HOH HOH . F 4 HOH A 18 518 518 HOH HOH . F 4 HOH A 19 519 519 HOH HOH . F 4 HOH A 20 520 520 HOH HOH . F 4 HOH A 21 521 521 HOH HOH . F 4 HOH A 22 522 522 HOH HOH . F 4 HOH A 23 523 523 HOH HOH . F 4 HOH A 24 524 524 HOH HOH . F 4 HOH A 25 525 525 HOH HOH . F 4 HOH A 26 526 526 HOH HOH . F 4 HOH A 27 527 527 HOH HOH . F 4 HOH A 28 528 528 HOH HOH . F 4 HOH A 29 529 529 HOH HOH . F 4 HOH A 30 530 530 HOH HOH . F 4 HOH A 31 531 531 HOH HOH . F 4 HOH A 32 532 532 HOH HOH . F 4 HOH A 33 533 533 HOH HOH . F 4 HOH A 34 534 534 HOH HOH . F 4 HOH A 35 535 535 HOH HOH . F 4 HOH A 36 536 536 HOH HOH . F 4 HOH A 37 537 537 HOH HOH . F 4 HOH A 38 538 538 HOH HOH . F 4 HOH A 39 539 539 HOH HOH . F 4 HOH A 40 540 540 HOH HOH . F 4 HOH A 41 541 541 HOH HOH . F 4 HOH A 42 542 542 HOH HOH . F 4 HOH A 43 543 543 HOH HOH . F 4 HOH A 44 544 544 HOH HOH . F 4 HOH A 45 545 545 HOH HOH . F 4 HOH A 46 546 546 HOH HOH . F 4 HOH A 47 547 547 HOH HOH . F 4 HOH A 48 548 548 HOH HOH . F 4 HOH A 49 549 549 HOH HOH . F 4 HOH A 50 550 550 HOH HOH . F 4 HOH A 51 551 551 HOH HOH . F 4 HOH A 52 552 552 HOH HOH . F 4 HOH A 53 553 553 HOH HOH . F 4 HOH A 54 554 554 HOH HOH . F 4 HOH A 55 555 555 HOH HOH . F 4 HOH A 56 556 556 HOH HOH . F 4 HOH A 57 557 557 HOH HOH . F 4 HOH A 58 558 558 HOH HOH . F 4 HOH A 59 559 559 HOH HOH . F 4 HOH A 60 560 560 HOH HOH . F 4 HOH A 61 561 561 HOH HOH . F 4 HOH A 62 562 562 HOH HOH . F 4 HOH A 63 563 563 HOH HOH . F 4 HOH A 64 564 564 HOH HOH . F 4 HOH A 65 565 565 HOH HOH . F 4 HOH A 66 566 566 HOH HOH . F 4 HOH A 67 567 567 HOH HOH . F 4 HOH A 68 568 568 HOH HOH . F 4 HOH A 69 569 569 HOH HOH . F 4 HOH A 70 570 570 HOH HOH . F 4 HOH A 71 571 571 HOH HOH . F 4 HOH A 72 572 572 HOH HOH . F 4 HOH A 73 573 573 HOH HOH . F 4 HOH A 74 574 574 HOH HOH . F 4 HOH A 75 575 575 HOH HOH . F 4 HOH A 76 576 576 HOH HOH . F 4 HOH A 77 577 577 HOH HOH . F 4 HOH A 78 578 578 HOH HOH . F 4 HOH A 79 579 579 HOH HOH . F 4 HOH A 80 580 580 HOH HOH . F 4 HOH A 81 581 581 HOH HOH . F 4 HOH A 82 582 582 HOH HOH . F 4 HOH A 83 583 583 HOH HOH . F 4 HOH A 84 584 584 HOH HOH . F 4 HOH A 85 585 585 HOH HOH . F 4 HOH A 86 586 586 HOH HOH . F 4 HOH A 87 587 587 HOH HOH . F 4 HOH A 88 588 588 HOH HOH . F 4 HOH A 89 589 589 HOH HOH . F 4 HOH A 90 590 590 HOH HOH . F 4 HOH A 91 591 591 HOH HOH . F 4 HOH A 92 592 592 HOH HOH . F 4 HOH A 93 593 593 HOH HOH . F 4 HOH A 94 594 594 HOH HOH . F 4 HOH A 95 595 595 HOH HOH . F 4 HOH A 96 596 596 HOH HOH . F 4 HOH A 97 597 597 HOH HOH . F 4 HOH A 98 598 598 HOH HOH . F 4 HOH A 99 599 599 HOH HOH . F 4 HOH A 100 600 600 HOH HOH . F 4 HOH A 101 601 601 HOH HOH . F 4 HOH A 102 602 602 HOH HOH . F 4 HOH A 103 603 603 HOH HOH . F 4 HOH A 104 604 604 HOH HOH . F 4 HOH A 105 605 605 HOH HOH . F 4 HOH A 106 606 606 HOH HOH . F 4 HOH A 107 607 607 HOH HOH . F 4 HOH A 108 608 608 HOH HOH . F 4 HOH A 109 609 609 HOH HOH . F 4 HOH A 110 610 610 HOH HOH . F 4 HOH A 111 611 611 HOH HOH . F 4 HOH A 112 612 612 HOH HOH . F 4 HOH A 113 613 613 HOH HOH . F 4 HOH A 114 614 614 HOH HOH . F 4 HOH A 115 615 615 HOH HOH . F 4 HOH A 116 616 616 HOH HOH . F 4 HOH A 117 617 617 HOH HOH . F 4 HOH A 118 618 618 HOH HOH . F 4 HOH A 119 619 619 HOH HOH . F 4 HOH A 120 620 620 HOH HOH . F 4 HOH A 121 621 621 HOH HOH . F 4 HOH A 122 622 622 HOH HOH . F 4 HOH A 123 623 623 HOH HOH . F 4 HOH A 124 624 624 HOH HOH . F 4 HOH A 125 625 625 HOH HOH . F 4 HOH A 126 626 626 HOH HOH . F 4 HOH A 127 627 627 HOH HOH . F 4 HOH A 128 628 628 HOH HOH . F 4 HOH A 129 629 629 HOH HOH . F 4 HOH A 130 630 630 HOH HOH . F 4 HOH A 131 631 631 HOH HOH . F 4 HOH A 132 632 632 HOH HOH . F 4 HOH A 133 633 633 HOH HOH . F 4 HOH A 134 634 634 HOH HOH . F 4 HOH A 135 635 635 HOH HOH . F 4 HOH A 136 636 636 HOH HOH . F 4 HOH A 137 637 637 HOH HOH . F 4 HOH A 138 638 638 HOH HOH . F 4 HOH A 139 639 639 HOH HOH . F 4 HOH A 140 640 640 HOH HOH . F 4 HOH A 141 641 641 HOH HOH . F 4 HOH A 142 642 642 HOH HOH . F 4 HOH A 143 643 643 HOH HOH . F 4 HOH A 144 644 644 HOH HOH . F 4 HOH A 145 645 645 HOH HOH . F 4 HOH A 146 646 646 HOH HOH . F 4 HOH A 147 647 647 HOH HOH . F 4 HOH A 148 648 648 HOH HOH . F 4 HOH A 149 649 649 HOH HOH . F 4 HOH A 150 650 650 HOH HOH . F 4 HOH A 151 651 651 HOH HOH . F 4 HOH A 152 652 652 HOH HOH . F 4 HOH A 153 653 653 HOH HOH . F 4 HOH A 154 654 654 HOH HOH . F 4 HOH A 155 655 655 HOH HOH . F 4 HOH A 156 656 656 HOH HOH . F 4 HOH A 157 657 657 HOH HOH . F 4 HOH A 158 658 658 HOH HOH . F 4 HOH A 159 659 659 HOH HOH . F 4 HOH A 160 660 660 HOH HOH . F 4 HOH A 161 661 661 HOH HOH . F 4 HOH A 162 662 662 HOH HOH . F 4 HOH A 163 663 663 HOH HOH . F 4 HOH A 164 664 664 HOH HOH . F 4 HOH A 165 665 665 HOH HOH . F 4 HOH A 166 666 666 HOH HOH . F 4 HOH A 167 667 667 HOH HOH . F 4 HOH A 168 668 668 HOH HOH . F 4 HOH A 169 669 669 HOH HOH . F 4 HOH A 170 670 670 HOH HOH . F 4 HOH A 171 671 671 HOH HOH . F 4 HOH A 172 672 672 HOH HOH . F 4 HOH A 173 673 673 HOH HOH . F 4 HOH A 174 674 674 HOH HOH . F 4 HOH A 175 675 675 HOH HOH . F 4 HOH A 176 676 676 HOH HOH . F 4 HOH A 177 677 677 HOH HOH . F 4 HOH A 178 678 678 HOH HOH . F 4 HOH A 179 679 679 HOH HOH . F 4 HOH A 180 680 680 HOH HOH . F 4 HOH A 181 681 681 HOH HOH . F 4 HOH A 182 682 682 HOH HOH . F 4 HOH A 183 683 683 HOH HOH . F 4 HOH A 184 684 684 HOH HOH . F 4 HOH A 185 685 685 HOH HOH . F 4 HOH A 186 686 686 HOH HOH . F 4 HOH A 187 687 687 HOH HOH . F 4 HOH A 188 688 688 HOH HOH . F 4 HOH A 189 689 689 HOH HOH . F 4 HOH A 190 690 690 HOH HOH . F 4 HOH A 191 691 691 HOH HOH . F 4 HOH A 192 692 692 HOH HOH . F 4 HOH A 193 693 693 HOH HOH . F 4 HOH A 194 694 694 HOH HOH . F 4 HOH A 195 695 695 HOH HOH . F 4 HOH A 196 696 696 HOH HOH . F 4 HOH A 197 697 697 HOH HOH . F 4 HOH A 198 698 698 HOH HOH . F 4 HOH A 199 699 699 HOH HOH . F 4 HOH A 200 700 700 HOH HOH . F 4 HOH A 201 701 701 HOH HOH . F 4 HOH A 202 702 702 HOH HOH . F 4 HOH A 203 703 703 HOH HOH . F 4 HOH A 204 704 704 HOH HOH . F 4 HOH A 205 705 705 HOH HOH . F 4 HOH A 206 706 706 HOH HOH . F 4 HOH A 207 707 707 HOH HOH . F 4 HOH A 208 708 708 HOH HOH . F 4 HOH A 209 709 709 HOH HOH . F 4 HOH A 210 710 710 HOH HOH . F 4 HOH A 211 711 711 HOH HOH . F 4 HOH A 212 712 712 HOH HOH . F 4 HOH A 213 713 713 HOH HOH . F 4 HOH A 214 714 714 HOH HOH . F 4 HOH A 215 715 715 HOH HOH . F 4 HOH A 216 716 716 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 CEF . . . E 3 -5.072 -45.329 60.965 1 14.08 ? S1 CEF 301 A 1 HETATM 2 C C1 CEF . . . E 3 -3.941 -44.764 62.249 1 21.24 ? C1 CEF 301 A 1 HETATM 3 C C2 CEF . . . E 3 -2.523 -44.993 62.196 1 20.25 ? C2 CEF 301 A 1 HETATM 4 C C3 CEF . . . E 3 -1.789 -44.887 63.321 1 25.46 ? C3 CEF 301 A 1 HETATM 5 C C4 CEF . . . E 3 -1.812 -45.329 60.911 1 15.75 ? C4 CEF 301 A 1 HETATM 6 C C5 CEF . . . E 3 -0.266 -45.561 60.745 1 12.33 ? C5 CEF 301 A 1 HETATM 7 O O1 CEF . . . E 3 0.265 -46.602 61.179 1 16.3 ? O1 CEF 301 A 1 HETATM 8 O O2 CEF . . . E 3 0.364 -44.647 60.168 1 14.35 ? O2 CEF 301 A 1 HETATM 9 N N1 CEF . . . E 3 -2.501 -45.415 59.769 1 5.22 ? N1 CEF 301 A 1 HETATM 10 C C6 CEF . . . E 3 -3.94 -45.408 59.563 1 9.37 ? C6 CEF 301 A 1 HETATM 11 C C7 CEF . . . E 3 -4.348 -46.545 58.459 1 8.34 ? C7 CEF 301 A 1 HETATM 12 C C8 CEF . . . E 3 -3.184 -46.599 57.453 1 5.8 ? C8 CEF 301 A 1 HETATM 13 O O3 CEF . . . E 3 -2.51 -47.604 57.297 1 8.7 ? O3 CEF 301 A 1 HETATM 14 N N2 CEF . . . E 3 -4.629 -47.814 59.166 1 4.51 ? N2 CEF 301 A 1 HETATM 15 C C9 CEF . . . E 3 -5.909 -48.117 59.478 1 3.39 ? C9 CEF 301 A 1 HETATM 16 O O4 CEF . . . E 3 -6.82 -47.269 59.327 1 8.17 ? O4 CEF 301 A 1 HETATM 17 C C10 CEF . . . E 3 -6.092 -49.48 59.976 1 12.7 ? C10 CEF 301 A 1 HETATM 18 N N3 CEF . . . E 3 -5.409 -50.053 61.016 1 19.14 ? N3 CEF 301 A 1 HETATM 19 O O5 CEF . . . E 3 -4.45 -49.172 61.654 1 23.06 ? O5 CEF 301 A 1 HETATM 20 C C11 CEF . . . E 3 -4.284 -49.678 62.964 1 15.19 ? C11 CEF 301 A 1 HETATM 21 C C12 CEF . . . E 3 -7.074 -50.416 59.358 1 16.24 ? C12 CEF 301 A 1 HETATM 22 C C13 CEF . . . E 3 -8.107 -50.044 58.398 1 21.72 ? C13 CEF 301 A 1 HETATM 23 S S2 CEF . . . E 3 -8.998 -51.356 57.864 1 35.32 ? S2 CEF 301 A 1 HETATM 24 C C14 CEF . . . E 3 -8.148 -52.394 58.868 1 33.22 ? C14 CEF 301 A 1 HETATM 25 N N4 CEF . . . E 3 -8.393 -53.779 58.961 1 42.29 ? N4 CEF 301 A 1 HETATM 26 N N5 CEF . . . E 3 -7.208 -51.751 59.558 1 33.98 ? N5 CEF 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #