data_1IYP # _model_server_result.job_id qTZLsd31CCWrD5liqlpBeQ _model_server_result.datetime_utc '2024-10-12 05:21:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1iyp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 1IYP # _exptl.entry_id 1IYP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.454 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CEPHALOTHIN GROUP' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1IYP _cell.length_a 73.229 _cell.length_b 73.229 _cell.length_c 100.229 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IYP _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 44 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 70 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id C8 _struct_conn.ptnr2_label_comp_id CEP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CEP _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.351 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C16 H18 N2 O6 S2' _chem_comp.formula_weight 398.454 _chem_comp.id CEP _chem_comp.mon_nstd_flag . _chem_comp.name 'CEPHALOTHIN GROUP' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C2 CEP sing 70 n n S1 C6 CEP sing 71 n n C2 C3 CEP sing 72 n n C2 H21 CEP sing 73 n n C2 H22 CEP sing 74 n n C3 C3' CEP sing 75 n n C3 C4 CEP doub 76 n n C3' C2' CEP sing 77 n n C3' "H3'1" CEP sing 78 n n C3' "H3'2" CEP sing 79 n n C2' O1' CEP doub 80 n n C2' O2' CEP sing 81 n n O2' C1' CEP sing 82 n n C1' "H1'1" CEP sing 83 n n C1' "H1'2" CEP sing 84 n n C1' "H1'3" CEP sing 85 n n C4 C4' CEP sing 86 n n C4 N5 CEP sing 87 n n C4' O4A CEP doub 88 n n C4' O4B CEP sing 89 n n O4B HO4 CEP sing 90 n n N5 C6 CEP sing 91 n n C6 C7 CEP sing 92 n n C6 H6 CEP sing 93 n n C7 C8 CEP sing 94 n n C7 N10 CEP sing 95 n n C7 H7 CEP sing 96 n n C8 O9 CEP doub 97 n n C8 H88 CEP sing 98 n n N10 C11 CEP sing 99 n n N10 HN1 CEP sing 100 n n C11 O12 CEP doub 101 n n C11 C13 CEP sing 102 n n C13 C14 CEP sing 103 n n C13 H131 CEP sing 104 n n C13 H132 CEP sing 105 n n C14 C15 CEP doub 106 n y C14 S19 CEP sing 107 n y C15 C16 CEP sing 108 n y C15 H15 CEP sing 109 n n C16 C17 CEP doub 110 n y C16 H16 CEP sing 111 n n C17 S19 CEP sing 112 n y C17 H17 CEP sing 113 n n HN2 N5 CEP sing 114 n n # _atom_sites.entry_id 1IYP _atom_sites.fract_transf_matrix[1][1] 0.013656 _atom_sites.fract_transf_matrix[1][2] 0.007884 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015768 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009977 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 401 SO4 SO4 . C 2 SO4 A 1 402 402 SO4 SO4 . D 2 SO4 A 1 403 403 SO4 SO4 . E 3 CEP A 1 301 301 CEP CEP . F 4 HOH A 1 501 501 HOH HOH . F 4 HOH A 2 502 502 HOH HOH . F 4 HOH A 3 503 503 HOH HOH . F 4 HOH A 4 504 504 HOH HOH . F 4 HOH A 5 505 505 HOH HOH . F 4 HOH A 6 506 506 HOH HOH . F 4 HOH A 7 507 507 HOH HOH . F 4 HOH A 8 508 508 HOH HOH . F 4 HOH A 9 509 509 HOH HOH . F 4 HOH A 10 510 510 HOH HOH . F 4 HOH A 11 511 511 HOH HOH . F 4 HOH A 12 512 512 HOH HOH . F 4 HOH A 13 513 513 HOH HOH . F 4 HOH A 14 514 514 HOH HOH . F 4 HOH A 15 515 515 HOH HOH . F 4 HOH A 16 516 516 HOH HOH . F 4 HOH A 17 517 517 HOH HOH . F 4 HOH A 18 518 518 HOH HOH . F 4 HOH A 19 519 519 HOH HOH . F 4 HOH A 20 520 520 HOH HOH . F 4 HOH A 21 521 521 HOH HOH . F 4 HOH A 22 522 522 HOH HOH . F 4 HOH A 23 523 523 HOH HOH . F 4 HOH A 24 524 524 HOH HOH . F 4 HOH A 25 525 525 HOH HOH . F 4 HOH A 26 526 526 HOH HOH . F 4 HOH A 27 527 527 HOH HOH . F 4 HOH A 28 528 528 HOH HOH . F 4 HOH A 29 529 529 HOH HOH . F 4 HOH A 30 530 530 HOH HOH . F 4 HOH A 31 531 531 HOH HOH . F 4 HOH A 32 532 532 HOH HOH . F 4 HOH A 33 533 533 HOH HOH . F 4 HOH A 34 534 534 HOH HOH . F 4 HOH A 35 535 535 HOH HOH . F 4 HOH A 36 536 536 HOH HOH . F 4 HOH A 37 537 537 HOH HOH . F 4 HOH A 38 538 538 HOH HOH . F 4 HOH A 39 539 539 HOH HOH . F 4 HOH A 40 540 540 HOH HOH . F 4 HOH A 41 541 541 HOH HOH . F 4 HOH A 42 542 542 HOH HOH . F 4 HOH A 43 543 543 HOH HOH . F 4 HOH A 44 544 544 HOH HOH . F 4 HOH A 45 545 545 HOH HOH . F 4 HOH A 46 546 546 HOH HOH . F 4 HOH A 47 547 547 HOH HOH . F 4 HOH A 48 548 548 HOH HOH . F 4 HOH A 49 549 549 HOH HOH . F 4 HOH A 50 550 550 HOH HOH . F 4 HOH A 51 551 551 HOH HOH . F 4 HOH A 52 552 552 HOH HOH . F 4 HOH A 53 553 553 HOH HOH . F 4 HOH A 54 554 554 HOH HOH . F 4 HOH A 55 555 555 HOH HOH . F 4 HOH A 56 556 556 HOH HOH . F 4 HOH A 57 557 557 HOH HOH . F 4 HOH A 58 558 558 HOH HOH . F 4 HOH A 59 559 559 HOH HOH . F 4 HOH A 60 560 560 HOH HOH . F 4 HOH A 61 561 561 HOH HOH . F 4 HOH A 62 562 562 HOH HOH . F 4 HOH A 63 563 563 HOH HOH . F 4 HOH A 64 564 564 HOH HOH . F 4 HOH A 65 565 565 HOH HOH . F 4 HOH A 66 566 566 HOH HOH . F 4 HOH A 67 567 567 HOH HOH . F 4 HOH A 68 568 568 HOH HOH . F 4 HOH A 69 569 569 HOH HOH . F 4 HOH A 70 570 570 HOH HOH . F 4 HOH A 71 571 571 HOH HOH . F 4 HOH A 72 572 572 HOH HOH . F 4 HOH A 73 573 573 HOH HOH . F 4 HOH A 74 574 574 HOH HOH . F 4 HOH A 75 575 575 HOH HOH . F 4 HOH A 76 576 576 HOH HOH . F 4 HOH A 77 577 577 HOH HOH . F 4 HOH A 78 578 578 HOH HOH . F 4 HOH A 79 579 579 HOH HOH . F 4 HOH A 80 580 580 HOH HOH . F 4 HOH A 81 581 581 HOH HOH . F 4 HOH A 82 582 582 HOH HOH . F 4 HOH A 83 583 583 HOH HOH . F 4 HOH A 84 584 584 HOH HOH . F 4 HOH A 85 585 585 HOH HOH . F 4 HOH A 86 586 586 HOH HOH . F 4 HOH A 87 587 587 HOH HOH . F 4 HOH A 88 588 588 HOH HOH . F 4 HOH A 89 589 589 HOH HOH . F 4 HOH A 90 590 590 HOH HOH . F 4 HOH A 91 591 591 HOH HOH . F 4 HOH A 92 592 592 HOH HOH . F 4 HOH A 93 593 593 HOH HOH . F 4 HOH A 94 594 594 HOH HOH . F 4 HOH A 95 595 595 HOH HOH . F 4 HOH A 96 596 596 HOH HOH . F 4 HOH A 97 597 597 HOH HOH . F 4 HOH A 98 598 598 HOH HOH . F 4 HOH A 99 599 599 HOH HOH . F 4 HOH A 100 600 600 HOH HOH . F 4 HOH A 101 601 601 HOH HOH . F 4 HOH A 102 602 602 HOH HOH . F 4 HOH A 103 603 603 HOH HOH . F 4 HOH A 104 604 604 HOH HOH . F 4 HOH A 105 605 605 HOH HOH . F 4 HOH A 106 606 606 HOH HOH . F 4 HOH A 107 607 607 HOH HOH . F 4 HOH A 108 608 608 HOH HOH . F 4 HOH A 109 609 609 HOH HOH . F 4 HOH A 110 610 610 HOH HOH . F 4 HOH A 111 611 611 HOH HOH . F 4 HOH A 112 612 612 HOH HOH . F 4 HOH A 113 613 613 HOH HOH . F 4 HOH A 114 614 614 HOH HOH . F 4 HOH A 115 615 615 HOH HOH . F 4 HOH A 116 616 616 HOH HOH . F 4 HOH A 117 617 617 HOH HOH . F 4 HOH A 118 618 618 HOH HOH . F 4 HOH A 119 619 619 HOH HOH . F 4 HOH A 120 620 620 HOH HOH . F 4 HOH A 121 621 621 HOH HOH . F 4 HOH A 122 622 622 HOH HOH . F 4 HOH A 123 623 623 HOH HOH . F 4 HOH A 124 624 624 HOH HOH . F 4 HOH A 125 625 625 HOH HOH . F 4 HOH A 126 626 626 HOH HOH . F 4 HOH A 127 627 627 HOH HOH . F 4 HOH A 128 628 628 HOH HOH . F 4 HOH A 129 629 629 HOH HOH . F 4 HOH A 130 630 630 HOH HOH . F 4 HOH A 131 631 631 HOH HOH . F 4 HOH A 132 632 632 HOH HOH . F 4 HOH A 133 633 633 HOH HOH . F 4 HOH A 134 634 634 HOH HOH . F 4 HOH A 135 635 635 HOH HOH . F 4 HOH A 136 636 636 HOH HOH . F 4 HOH A 137 637 637 HOH HOH . F 4 HOH A 138 638 638 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 CEP . . . E 3 42.326 18.537 28.886 1 36.31 ? S1 CEP 301 A 1 HETATM 2 C C2 CEP . . . E 3 40.909 18.877 29.983 1 40.99 ? C2 CEP 301 A 1 HETATM 3 C C3 CEP . . . E 3 40.115 20.172 29.823 1 46.55 ? C3 CEP 301 A 1 HETATM 4 C C3' CEP . . . E 3 39.096 20.417 30.628 1 48.58 ? C3' CEP 301 A 1 HETATM 5 C C4 CEP . . . E 3 40.473 21.201 28.734 1 37.04 ? C4 CEP 301 A 1 HETATM 6 C C4' CEP . . . E 3 39.869 22.572 28.531 1 34.46 ? C4' CEP 301 A 1 HETATM 7 O O4A CEP . . . E 3 38.807 22.629 27.875 1 31.76 ? O4A CEP 301 A 1 HETATM 8 O O4B CEP . . . E 3 40.46 23.577 28.99 1 35.03 ? O4B CEP 301 A 1 HETATM 9 N N5 CEP . . . E 3 41.387 20.874 27.846 1 31.01 ? N5 CEP 301 A 1 HETATM 10 C C6 CEP . . . E 3 41.746 19.523 27.49 1 34.62 ? C6 CEP 301 A 1 HETATM 11 C C7 CEP . . . E 3 42.773 19.56 26.329 1 28.28 ? C7 CEP 301 A 1 HETATM 12 C C8 CEP . . . E 3 42.348 20.675 25.364 1 30.66 ? C8 CEP 301 A 1 HETATM 13 O O9 CEP . . . E 3 42.777 21.804 25.26 1 27.99 ? O9 CEP 301 A 1 HETATM 14 N N10 CEP . . . E 3 44.124 19.866 26.879 1 27.59 ? N10 CEP 301 A 1 HETATM 15 C C11 CEP . . . E 3 45.067 18.94 27.117 1 34.14 ? C11 CEP 301 A 1 HETATM 16 O O12 CEP . . . E 3 44.889 17.757 26.898 1 34.95 ? O12 CEP 301 A 1 HETATM 17 C C13 CEP . . . E 3 46.335 19.564 27.693 1 30.33 ? C13 CEP 301 A 1 HETATM 18 C C14 CEP . . . E 3 47.721 19.315 27.186 1 44.28 ? C14 CEP 301 A 1 HETATM 19 C C15 CEP . . . E 3 48.777 20.212 27.328 1 30.07 ? C15 CEP 301 A 1 HETATM 20 C C16 CEP . . . E 3 49.883 19.578 26.624 1 40.2 ? C16 CEP 301 A 1 HETATM 21 C C17 CEP . . . E 3 49.676 18.415 26.111 1 37.46 ? C17 CEP 301 A 1 HETATM 22 S S19 CEP . . . E 3 48.099 17.935 26.398 1 55.43 ? S19 CEP 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #