data_1IYQ # _model_server_result.job_id 96VAUeTuVcIC4MNhSj736w _model_server_result.datetime_utc '2024-10-12 05:23:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1iyq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 1IYQ # _exptl.entry_id 1IYQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 336.406 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OPEN FORM - PENICILLIN G' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1IYQ _cell.length_a 72.799 _cell.length_b 72.799 _cell.length_c 99.467 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IYQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 44 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 70 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id C7 _struct_conn.ptnr2_label_comp_id PNM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PNM _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.373 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C16 H20 N2 O4 S' _chem_comp.formula_weight 336.406 _chem_comp.id PNM _chem_comp.mon_nstd_flag . _chem_comp.name 'OPEN FORM - PENICILLIN G' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O8 C7 PNM doub 260 n n C7 C6 PNM sing 261 n n C7 HC7 PNM sing 262 n n N4 C3 PNM sing 263 n n N4 C5 PNM sing 264 n n N4 H4 PNM sing 265 n n C3 C11 PNM sing 266 n n C3 C2 PNM sing 267 n n C3 HC3 PNM sing 268 n n C11 O13 PNM sing 269 n n C11 O12 PNM doub 270 n n O13 HXT PNM sing 271 n n C2 C10 PNM sing 272 n n C2 C9 PNM sing 273 n n C2 S1 PNM sing 274 n n C10 H101 PNM sing 275 n n C10 H102 PNM sing 276 n n C10 H103 PNM sing 277 n n C9 HC91 PNM sing 278 n n C9 HC92 PNM sing 279 n n C9 HC93 PNM sing 280 n n S1 C5 PNM sing 281 n n C5 C6 PNM sing 282 n n C5 HC5 PNM sing 283 n n C6 N14 PNM sing 284 n n C6 HC6 PNM sing 285 n n N14 C15 PNM sing 286 n n N14 H14 PNM sing 287 n n C15 O16 PNM doub 288 n n C15 C17 PNM sing 289 n n C17 C18 PNM sing 290 n n C17 H171 PNM sing 291 n n C17 H172 PNM sing 292 n n C18 C19 PNM doub 293 n y C18 C23 PNM sing 294 n y C19 C20 PNM sing 295 n y C19 H19 PNM sing 296 n n C20 C21 PNM doub 297 n y C20 H20 PNM sing 298 n n C21 C22 PNM sing 299 n y C21 H21 PNM sing 300 n n C22 C23 PNM doub 301 n y C22 H22 PNM sing 302 n n C23 H23 PNM sing 303 n n # _atom_sites.entry_id 1IYQ _atom_sites.fract_transf_matrix[1][1] 0.013736 _atom_sites.fract_transf_matrix[1][2] 0.007931 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015861 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010054 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 401 SO4 SO4 . C 2 SO4 A 1 402 402 SO4 SO4 . D 2 SO4 A 1 403 403 SO4 SO4 . E 3 PNM A 1 301 301 PNM PNM . F 4 HOH A 1 501 501 HOH HOH . F 4 HOH A 2 502 502 HOH HOH . F 4 HOH A 3 503 503 HOH HOH . F 4 HOH A 4 504 504 HOH HOH . F 4 HOH A 5 505 505 HOH HOH . F 4 HOH A 6 506 506 HOH HOH . F 4 HOH A 7 507 507 HOH HOH . F 4 HOH A 8 508 508 HOH HOH . F 4 HOH A 9 509 509 HOH HOH . F 4 HOH A 10 510 510 HOH HOH . F 4 HOH A 11 511 511 HOH HOH . F 4 HOH A 12 512 512 HOH HOH . F 4 HOH A 13 513 513 HOH HOH . F 4 HOH A 14 514 514 HOH HOH . F 4 HOH A 15 515 515 HOH HOH . F 4 HOH A 16 516 516 HOH HOH . F 4 HOH A 17 517 517 HOH HOH . F 4 HOH A 18 518 518 HOH HOH . F 4 HOH A 19 519 519 HOH HOH . F 4 HOH A 20 520 520 HOH HOH . F 4 HOH A 21 521 521 HOH HOH . F 4 HOH A 22 522 522 HOH HOH . F 4 HOH A 23 523 523 HOH HOH . F 4 HOH A 24 524 524 HOH HOH . F 4 HOH A 25 525 525 HOH HOH . F 4 HOH A 26 526 526 HOH HOH . F 4 HOH A 27 527 527 HOH HOH . F 4 HOH A 28 528 528 HOH HOH . F 4 HOH A 29 529 529 HOH HOH . F 4 HOH A 30 530 530 HOH HOH . F 4 HOH A 31 531 531 HOH HOH . F 4 HOH A 32 532 532 HOH HOH . F 4 HOH A 33 533 533 HOH HOH . F 4 HOH A 34 534 534 HOH HOH . F 4 HOH A 35 535 535 HOH HOH . F 4 HOH A 36 536 536 HOH HOH . F 4 HOH A 37 537 537 HOH HOH . F 4 HOH A 38 538 538 HOH HOH . F 4 HOH A 39 539 539 HOH HOH . F 4 HOH A 40 540 540 HOH HOH . F 4 HOH A 41 541 541 HOH HOH . F 4 HOH A 42 542 542 HOH HOH . F 4 HOH A 43 543 543 HOH HOH . F 4 HOH A 44 544 544 HOH HOH . F 4 HOH A 45 545 545 HOH HOH . F 4 HOH A 46 546 546 HOH HOH . F 4 HOH A 47 547 547 HOH HOH . F 4 HOH A 48 548 548 HOH HOH . F 4 HOH A 49 549 549 HOH HOH . F 4 HOH A 50 550 550 HOH HOH . F 4 HOH A 51 551 551 HOH HOH . F 4 HOH A 52 552 552 HOH HOH . F 4 HOH A 53 553 553 HOH HOH . F 4 HOH A 54 554 554 HOH HOH . F 4 HOH A 55 555 555 HOH HOH . F 4 HOH A 56 556 556 HOH HOH . F 4 HOH A 57 557 557 HOH HOH . F 4 HOH A 58 558 558 HOH HOH . F 4 HOH A 59 559 559 HOH HOH . F 4 HOH A 60 560 560 HOH HOH . F 4 HOH A 61 561 561 HOH HOH . F 4 HOH A 62 562 562 HOH HOH . F 4 HOH A 63 563 563 HOH HOH . F 4 HOH A 64 564 564 HOH HOH . F 4 HOH A 65 565 565 HOH HOH . F 4 HOH A 66 566 566 HOH HOH . F 4 HOH A 67 567 567 HOH HOH . F 4 HOH A 68 568 568 HOH HOH . F 4 HOH A 69 569 569 HOH HOH . F 4 HOH A 70 570 570 HOH HOH . F 4 HOH A 71 571 571 HOH HOH . F 4 HOH A 72 572 572 HOH HOH . F 4 HOH A 73 573 573 HOH HOH . F 4 HOH A 74 574 574 HOH HOH . F 4 HOH A 75 575 575 HOH HOH . F 4 HOH A 76 576 576 HOH HOH . F 4 HOH A 77 577 577 HOH HOH . F 4 HOH A 78 578 578 HOH HOH . F 4 HOH A 79 579 579 HOH HOH . F 4 HOH A 80 580 580 HOH HOH . F 4 HOH A 81 581 581 HOH HOH . F 4 HOH A 82 582 582 HOH HOH . F 4 HOH A 83 583 583 HOH HOH . F 4 HOH A 84 584 584 HOH HOH . F 4 HOH A 85 585 585 HOH HOH . F 4 HOH A 86 586 586 HOH HOH . F 4 HOH A 87 587 587 HOH HOH . F 4 HOH A 88 588 588 HOH HOH . F 4 HOH A 89 589 589 HOH HOH . F 4 HOH A 90 590 590 HOH HOH . F 4 HOH A 91 591 591 HOH HOH . F 4 HOH A 92 592 592 HOH HOH . F 4 HOH A 93 593 593 HOH HOH . F 4 HOH A 94 594 594 HOH HOH . F 4 HOH A 95 595 595 HOH HOH . F 4 HOH A 96 596 596 HOH HOH . F 4 HOH A 97 597 597 HOH HOH . F 4 HOH A 98 598 598 HOH HOH . F 4 HOH A 99 599 599 HOH HOH . F 4 HOH A 100 600 600 HOH HOH . F 4 HOH A 101 601 601 HOH HOH . F 4 HOH A 102 602 602 HOH HOH . F 4 HOH A 103 603 603 HOH HOH . F 4 HOH A 104 604 604 HOH HOH . F 4 HOH A 105 605 605 HOH HOH . F 4 HOH A 106 606 606 HOH HOH . F 4 HOH A 107 607 607 HOH HOH . F 4 HOH A 108 608 608 HOH HOH . F 4 HOH A 109 609 609 HOH HOH . F 4 HOH A 110 610 610 HOH HOH . F 4 HOH A 111 611 611 HOH HOH . F 4 HOH A 112 612 612 HOH HOH . F 4 HOH A 113 613 613 HOH HOH . F 4 HOH A 114 614 614 HOH HOH . F 4 HOH A 115 615 615 HOH HOH . F 4 HOH A 116 616 616 HOH HOH . F 4 HOH A 117 617 617 HOH HOH . F 4 HOH A 118 618 618 HOH HOH . F 4 HOH A 119 619 619 HOH HOH . F 4 HOH A 120 620 620 HOH HOH . F 4 HOH A 121 621 621 HOH HOH . F 4 HOH A 122 622 622 HOH HOH . F 4 HOH A 123 623 623 HOH HOH . F 4 HOH A 124 624 624 HOH HOH . F 4 HOH A 125 625 625 HOH HOH . F 4 HOH A 126 626 626 HOH HOH . F 4 HOH A 127 627 627 HOH HOH . F 4 HOH A 128 628 628 HOH HOH . F 4 HOH A 129 629 629 HOH HOH . F 4 HOH A 130 630 630 HOH HOH . F 4 HOH A 131 631 631 HOH HOH . F 4 HOH A 132 632 632 HOH HOH . F 4 HOH A 133 633 633 HOH HOH . F 4 HOH A 134 634 634 HOH HOH . F 4 HOH A 135 635 635 HOH HOH . F 4 HOH A 136 636 636 HOH HOH . F 4 HOH A 137 637 637 HOH HOH . F 4 HOH A 138 638 638 HOH HOH . F 4 HOH A 139 639 639 HOH HOH . F 4 HOH A 140 640 640 HOH HOH . F 4 HOH A 141 641 641 HOH HOH . F 4 HOH A 142 642 642 HOH HOH . F 4 HOH A 143 643 643 HOH HOH . F 4 HOH A 144 644 644 HOH HOH . F 4 HOH A 145 645 645 HOH HOH . F 4 HOH A 146 646 646 HOH HOH . F 4 HOH A 147 647 647 HOH HOH . F 4 HOH A 148 648 648 HOH HOH . F 4 HOH A 149 649 649 HOH HOH . F 4 HOH A 150 650 650 HOH HOH . F 4 HOH A 151 651 651 HOH HOH . F 4 HOH A 152 652 652 HOH HOH . F 4 HOH A 153 653 653 HOH HOH . F 4 HOH A 154 654 654 HOH HOH . F 4 HOH A 155 655 655 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O8 PNM . . . E 3 42.196 21.395 24.912 1 14.23 ? O8 PNM 301 A 1 HETATM 2 C C7 PNM . . . E 3 41.637 20.296 25.035 1 17.13 ? C7 PNM 301 A 1 HETATM 3 N N4 PNM . . . E 3 40.372 20.589 26.994 1 16.3 ? N4 PNM 301 A 1 HETATM 4 C C3 PNM . . . E 3 40.798 21.479 28.106 1 29.24 ? C3 PNM 301 A 1 HETATM 5 C C11 PNM . . . E 3 39.864 22.668 28.26 1 31.19 ? C11 PNM 301 A 1 HETATM 6 O O13 PNM . . . E 3 40.299 23.698 28.817 1 29.41 ? O13 PNM 301 A 1 HETATM 7 O O12 PNM . . . E 3 38.695 22.563 27.823 1 27.38 ? O12 PNM 301 A 1 HETATM 8 C C2 PNM . . . E 3 40.899 20.617 29.373 1 20.04 ? C2 PNM 301 A 1 HETATM 9 C C10 PNM . . . E 3 41.694 21.342 30.458 1 28.49 ? C10 PNM 301 A 1 HETATM 10 C C9 PNM . . . E 3 39.504 20.263 29.911 1 28.39 ? C9 PNM 301 A 1 HETATM 11 S S1 PNM . . . E 3 41.808 19.132 28.796 1 25.85 ? S1 PNM 301 A 1 HETATM 12 C C5 PNM . . . E 3 41.109 19.315 27.126 1 13.28 ? C5 PNM 301 A 1 HETATM 13 C C6 PNM . . . E 3 42.166 19.306 26.03 1 18.47 ? C6 PNM 301 A 1 HETATM 14 N N14 PNM . . . E 3 43.48 19.722 26.53 1 22.24 ? N14 PNM 301 A 1 HETATM 15 C C15 PNM . . . E 3 44.398 18.85 26.934 1 27.82 ? C15 PNM 301 A 1 HETATM 16 O O16 PNM . . . E 3 44.272 17.636 26.796 1 40.55 ? O16 PNM 301 A 1 HETATM 17 C C17 PNM . . . E 3 45.688 19.433 27.46 1 36.56 ? C17 PNM 301 A 1 HETATM 18 C C18 PNM . . . E 3 45.612 19.862 28.89 1 32.47 ? C18 PNM 301 A 1 HETATM 19 C C19 PNM . . . E 3 45.976 21.153 29.262 1 39.79 ? C19 PNM 301 A 1 HETATM 20 C C20 PNM . . . E 3 45.932 21.556 30.605 1 33.48 ? C20 PNM 301 A 1 HETATM 21 C C21 PNM . . . E 3 45.517 20.655 31.587 1 38.83 ? C21 PNM 301 A 1 HETATM 22 C C22 PNM . . . E 3 45.149 19.361 31.222 1 34.45 ? C22 PNM 301 A 1 HETATM 23 C C23 PNM . . . E 3 45.198 18.973 29.875 1 28.06 ? C23 PNM 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 23 #