data_1IZB # _model_server_result.job_id xIap-EDL69m0wwjiHCSqeQ _model_server_result.datetime_utc '2024-11-21 22:29:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1izb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":102}' # _entry.id 1IZB # _exptl.entry_id 1IZB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1IZB _cell.length_a 82.85 _cell.length_b 82.85 _cell.length_c 34.1 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IZB _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dodecameric 12 software_defined_assembly 3 PISA dodecameric 12 software_defined_assembly 4 PISA hexameric 6 software_defined_assembly 5 PISA hexameric 6 software_defined_assembly 6 PISA tetrameric 4 software_defined_assembly 7 PISA tetrameric 4 software_defined_assembly 8 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 A,B,C,D,E,F,G,H,I,J 3 1,2,3 A,B,E,G,H 4 1,2,3 C,D,F,I,J 4 4,5,6 A,B,E,G,H 5 1,2,3 C,D,F,I,J 6 1,2,3 A,B,E,G,H 7 1 C,D,F,I,J 7 2 A,B,C,D,E,F,G,H,I,J 8 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 1_556 x,y,z+1 1 0 0 0 1 0 0 0 1 0 0 34.1 5 'crystal symmetry operation' 2_556 -y,x-y,z+1 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 34.1 6 'crystal symmetry operation' 3_556 -x+y,-x,z+1 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 34.1 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 11 A CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? disulf ? disulf2 A SG CYS 7 A CYS 7 1_555 B SG CYS 7 B CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf3 A SG CYS 20 A CYS 20 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf4 C SG CYS 6 C CYS 6 1_555 C SG CYS 11 C CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf5 C SG CYS 7 C CYS 7 1_555 D SG CYS 7 D CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? disulf ? disulf6 C SG CYS 20 C CYS 20 1_555 D SG CYS 19 D CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc1 B NE2 HIS 10 B HIS 10 1_555 E ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc2 B NE2 HIS 10 B HIS 10 2_555 E ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc3 B NE2 HIS 10 B HIS 10 3_555 E ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc4 E ZN ZN . B ZN 101 1_555 H O HOH . B HOH 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc5 E ZN ZN . B ZN 101 1_555 H O HOH . B HOH 106 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc6 E ZN ZN . B ZN 101 1_555 H O HOH . B HOH 106 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc7 D NE2 HIS 10 D HIS 10 1_555 F ZN ZN . D ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc8 D NE2 HIS 10 D HIS 10 3_555 F ZN ZN . D ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc9 D NE2 HIS 10 D HIS 10 2_555 F ZN ZN . D ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1IZB _atom_sites.fract_transf_matrix[1][1] 0.01207 _atom_sites.fract_transf_matrix[1][2] 0.006969 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013937 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029326 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN B 1 101 101 ZN ZN . F 3 ZN D 1 102 102 ZN ZN . G 4 HOH A 1 22 20 HOH HOH . G 4 HOH A 2 23 23 HOH HOH . G 4 HOH A 3 24 43 HOH HOH . G 4 HOH A 4 25 70 HOH HOH . G 4 HOH A 5 26 80 HOH HOH . G 4 HOH A 6 27 81 HOH HOH . G 4 HOH A 7 28 87 HOH HOH . G 4 HOH A 8 29 89 HOH HOH . G 4 HOH A 9 30 122 HOH HOH . G 4 HOH A 10 31 173 HOH HOH . G 4 HOH A 11 32 190 HOH HOH . G 4 HOH A 12 33 221 HOH HOH . G 4 HOH A 13 34 234 HOH HOH . G 4 HOH A 14 35 244 HOH HOH . G 4 HOH A 15 36 245 HOH HOH . G 4 HOH A 16 37 247 HOH HOH . G 4 HOH A 17 38 248 HOH HOH . H 4 HOH B 1 102 14 HOH HOH . H 4 HOH B 2 103 27 HOH HOH . H 4 HOH B 3 104 44 HOH HOH . H 4 HOH B 4 105 52 HOH HOH . H 4 HOH B 5 106 64 HOH HOH . H 4 HOH B 6 107 73 HOH HOH . H 4 HOH B 7 108 92 HOH HOH . H 4 HOH B 8 109 93 HOH HOH . H 4 HOH B 9 110 101 HOH HOH . H 4 HOH B 10 111 104 HOH HOH . H 4 HOH B 11 112 108 HOH HOH . H 4 HOH B 12 113 109 HOH HOH . H 4 HOH B 13 114 117 HOH HOH . H 4 HOH B 14 115 119 HOH HOH . H 4 HOH B 15 116 132 HOH HOH . H 4 HOH B 16 117 147 HOH HOH . H 4 HOH B 17 118 148 HOH HOH . H 4 HOH B 18 119 149 HOH HOH . H 4 HOH B 19 120 153 HOH HOH . H 4 HOH B 20 121 155 HOH HOH . H 4 HOH B 21 122 158 HOH HOH . H 4 HOH B 22 123 166 HOH HOH . H 4 HOH B 23 124 168 HOH HOH . H 4 HOH B 24 125 182 HOH HOH . H 4 HOH B 25 126 183 HOH HOH . H 4 HOH B 26 127 188 HOH HOH . H 4 HOH B 27 128 193 HOH HOH . H 4 HOH B 28 129 194 HOH HOH . H 4 HOH B 29 130 200 HOH HOH . H 4 HOH B 30 131 201 HOH HOH . H 4 HOH B 31 132 202 HOH HOH . H 4 HOH B 32 133 216 HOH HOH . H 4 HOH B 33 134 227 HOH HOH . H 4 HOH B 34 135 233 HOH HOH . H 4 HOH B 35 136 240 HOH HOH . H 4 HOH B 36 137 241 HOH HOH . H 4 HOH B 37 138 243 HOH HOH . H 4 HOH B 38 139 246 HOH HOH . I 4 HOH C 1 22 2 HOH HOH . I 4 HOH C 2 23 7 HOH HOH . I 4 HOH C 3 24 8 HOH HOH . I 4 HOH C 4 25 10 HOH HOH . I 4 HOH C 5 26 22 HOH HOH . I 4 HOH C 6 27 25 HOH HOH . I 4 HOH C 7 28 37 HOH HOH . I 4 HOH C 8 29 39 HOH HOH . I 4 HOH C 9 30 50 HOH HOH . I 4 HOH C 10 31 54 HOH HOH . I 4 HOH C 11 32 62 HOH HOH . I 4 HOH C 12 33 65 HOH HOH . I 4 HOH C 13 34 69 HOH HOH . I 4 HOH C 14 35 71 HOH HOH . I 4 HOH C 15 36 79 HOH HOH . I 4 HOH C 16 37 91 HOH HOH . I 4 HOH C 17 38 94 HOH HOH . I 4 HOH C 18 39 103 HOH HOH . I 4 HOH C 19 40 106 HOH HOH . I 4 HOH C 20 41 123 HOH HOH . I 4 HOH C 21 42 128 HOH HOH . I 4 HOH C 22 43 140 HOH HOH . I 4 HOH C 23 44 143 HOH HOH . I 4 HOH C 24 45 146 HOH HOH . I 4 HOH C 25 46 150 HOH HOH . I 4 HOH C 26 47 160 HOH HOH . I 4 HOH C 27 48 167 HOH HOH . I 4 HOH C 28 49 172 HOH HOH . I 4 HOH C 29 50 176 HOH HOH . I 4 HOH C 30 51 177 HOH HOH . I 4 HOH C 31 52 184 HOH HOH . I 4 HOH C 32 53 189 HOH HOH . I 4 HOH C 33 54 198 HOH HOH . I 4 HOH C 34 55 209 HOH HOH . I 4 HOH C 35 56 210 HOH HOH . I 4 HOH C 36 57 213 HOH HOH . I 4 HOH C 37 58 218 HOH HOH . I 4 HOH C 38 59 223 HOH HOH . I 4 HOH C 39 60 226 HOH HOH . I 4 HOH C 40 61 229 HOH HOH . I 4 HOH C 41 62 231 HOH HOH . I 4 HOH C 42 63 249 HOH HOH . J 4 HOH D 1 103 1 HOH HOH . J 4 HOH D 2 104 9 HOH HOH . J 4 HOH D 3 105 13 HOH HOH . J 4 HOH D 4 106 24 HOH HOH . J 4 HOH D 5 107 28 HOH HOH . J 4 HOH D 6 108 30 HOH HOH . J 4 HOH D 7 109 34 HOH HOH . J 4 HOH D 8 110 45 HOH HOH . J 4 HOH D 9 111 46 HOH HOH . J 4 HOH D 10 112 55 HOH HOH . J 4 HOH D 11 113 56 HOH HOH . J 4 HOH D 12 114 63 HOH HOH . J 4 HOH D 13 115 66 HOH HOH . J 4 HOH D 14 116 68 HOH HOH . J 4 HOH D 15 117 82 HOH HOH . J 4 HOH D 16 118 83 HOH HOH . J 4 HOH D 17 119 84 HOH HOH . J 4 HOH D 18 120 85 HOH HOH . J 4 HOH D 19 121 90 HOH HOH . J 4 HOH D 20 122 97 HOH HOH . J 4 HOH D 21 123 98 HOH HOH . J 4 HOH D 22 124 113 HOH HOH . J 4 HOH D 23 125 120 HOH HOH . J 4 HOH D 24 126 126 HOH HOH . J 4 HOH D 25 127 136 HOH HOH . J 4 HOH D 26 128 137 HOH HOH . J 4 HOH D 27 129 181 HOH HOH . J 4 HOH D 28 130 195 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 0 _atom_site.Cartn_y 0 _atom_site.Cartn_z -7.968 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 11.16 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 102 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #