data_1IZL # _model_server_result.job_id iCSngzJsu7fdTmxTrR_3cQ _model_server_result.datetime_utc '2024-11-21 13:42:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1izl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"WB","auth_seq_id":47}' # _entry.id 1IZL # _exptl.entry_id 1IZL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 536.873 _entity.id 20 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-CAROTENE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1IZL _cell.length_a 129.377 _cell.length_b 225.192 _cell.length_c 308.672 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1IZL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 28-meric _pdbx_struct_assembly.oligomeric_count 28 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD,GD,HD,ID,JD,KD,LD,MD,ND,OD,PD,QD,RD _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 20 TB N N ? 20 WB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B CE2 PHE 65 B PHE 65 1_555 SA C3C CLA . B CLA 1114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.559 ? covale ? covale2 C CD2 TYR 274 C TYR 274 1_555 MB CBD CLA . C CLA 1089 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.243 ? covale ? covale3 C CE2 TYR 274 C TYR 274 1_555 MB CBD CLA . C CLA 1089 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.643 ? covale ? covale4 D CB PHE 188 D PHE 188 1_555 OB CAC CLA . D CLA 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale5 Q CA GLY 129 M GLY 129 1_555 FD CAB CLA . M CLA 1087 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? covale ? covale6 R CB PHE 188 N PHE 188 1_555 ID CAC CLA . N CLA 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? metalc ? metalc1 A OD1 ASP 170 A ASP 170 1_555 EA MN MN . A MN 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc2 A O ALA 344 A ALA 344 1_555 CA MN MN . A MN 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc3 M NE2 HIS 41 V HIS 41 1_555 XB FE HEM . V HEM 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc4 M NE2 HIS 92 V HIS 92 1_555 XB FE HEM . V HEM 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc5 O OD1 ASP 170 J ASP 170 1_555 AC MN MN . J MN 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc6 O O ALA 344 J ALA 344 1_555 YB MN MN . J MN 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc7 AA NE2 HIS 41 0 HIS 41 1_555 RD FE HEM . 0 HEM 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc8 AA NE2 HIS 92 0 HIS 92 1_555 RD FE HEM . 0 HEM 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? # _chem_comp.formula 'C40 H56' _chem_comp.formula_weight 536.873 _chem_comp.id BCR _chem_comp.mon_nstd_flag . _chem_comp.name BETA-CAROTENE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BCR sing 70 n n C1 C6 BCR sing 71 n n C1 C31 BCR sing 72 n n C1 C32 BCR sing 73 n n C2 C3 BCR sing 74 n n C2 HC21 BCR sing 75 n n C2 HC22 BCR sing 76 n n C3 C4 BCR sing 77 n n C3 HC31 BCR sing 78 n n C3 HC32 BCR sing 79 n n C4 C5 BCR sing 80 n n C4 HC41 BCR sing 81 n n C4 HC42 BCR sing 82 n n C5 C6 BCR doub 83 n n C5 C33 BCR sing 84 n n C6 C7 BCR sing 85 n n C7 C8 BCR doub 86 e n C7 HC7 BCR sing 87 n n C8 C9 BCR sing 88 n n C8 HC8 BCR sing 89 n n C9 C10 BCR doub 90 e n C9 C34 BCR sing 91 n n C10 C11 BCR sing 92 n n C10 H10C BCR sing 93 n n C11 C12 BCR doub 94 e n C11 H11C BCR sing 95 n n C33 H331 BCR sing 96 n n C33 H332 BCR sing 97 n n C33 H333 BCR sing 98 n n C31 H311 BCR sing 99 n n C31 H312 BCR sing 100 n n C31 H313 BCR sing 101 n n C32 H321 BCR sing 102 n n C32 H322 BCR sing 103 n n C32 H323 BCR sing 104 n n C34 H341 BCR sing 105 n n C34 H342 BCR sing 106 n n C34 H343 BCR sing 107 n n C12 C13 BCR sing 108 n n C12 H12C BCR sing 109 n n C13 C14 BCR doub 110 e n C13 C35 BCR sing 111 n n C14 C15 BCR sing 112 n n C14 H14C BCR sing 113 n n C15 C16 BCR doub 114 e n C15 H15C BCR sing 115 n n C16 C17 BCR sing 116 n n C16 H16C BCR sing 117 n n C17 C18 BCR doub 118 e n C17 H17C BCR sing 119 n n C18 C19 BCR sing 120 n n C18 C36 BCR sing 121 n n C19 C20 BCR doub 122 e n C19 H19C BCR sing 123 n n C20 C21 BCR sing 124 n n C20 H20C BCR sing 125 n n C21 C22 BCR doub 126 e n C21 H21C BCR sing 127 n n C22 C23 BCR sing 128 n n C22 C37 BCR sing 129 n n C23 C24 BCR doub 130 e n C23 H23C BCR sing 131 n n C24 C25 BCR sing 132 n n C24 H24C BCR sing 133 n n C25 C26 BCR doub 134 n n C25 C30 BCR sing 135 n n C26 C27 BCR sing 136 n n C26 C38 BCR sing 137 n n C27 C28 BCR sing 138 n n C27 H271 BCR sing 139 n n C27 H272 BCR sing 140 n n C28 C29 BCR sing 141 n n C28 H281 BCR sing 142 n n C28 H282 BCR sing 143 n n C29 C30 BCR sing 144 n n C29 H291 BCR sing 145 n n C29 H292 BCR sing 146 n n C30 C39 BCR sing 147 n n C30 C40 BCR sing 148 n n C35 H351 BCR sing 149 n n C35 H352 BCR sing 150 n n C35 H353 BCR sing 151 n n C36 H361 BCR sing 152 n n C36 H362 BCR sing 153 n n C36 H363 BCR sing 154 n n C37 H371 BCR sing 155 n n C37 H372 BCR sing 156 n n C37 H373 BCR sing 157 n n C38 H381 BCR sing 158 n n C38 H382 BCR sing 159 n n C38 H383 BCR sing 160 n n C39 H391 BCR sing 161 n n C39 H392 BCR sing 162 n n C39 H393 BCR sing 163 n n C40 H401 BCR sing 164 n n C40 H402 BCR sing 165 n n C40 H403 BCR sing 166 n n # _atom_sites.entry_id 1IZL _atom_sites.fract_transf_matrix[1][1] 0.007729 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004441 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00324 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code CA 15 MN A 1 361 1 MN MN . DA 15 MN A 1 362 2 MN MN . EA 15 MN A 1 363 3 MN MN . FA 15 MN A 1 364 4 MN MN . GA 16 CLA A 1 365 6 CLA CLA . HA 16 CLA A 1 366 8 CLA CLA . IA 17 PHO A 1 367 11 PHO PHO . JA 16 CLA A 1 368 12 CLA CLA . KA 16 CLA A 1 369 25 CLA CLA . LA 16 CLA B 1 1107 27 CLA CLA . MA 16 CLA B 1 1108 28 CLA CLA . NA 16 CLA B 1 1109 29 CLA CLA . OA 16 CLA B 1 1110 30 CLA CLA . PA 16 CLA B 1 1111 31 CLA CLA . QA 16 CLA B 1 1112 32 CLA CLA . RA 16 CLA B 1 1113 33 CLA CLA . SA 16 CLA B 1 1114 34 CLA CLA . TA 16 CLA B 1 1115 35 CLA CLA . UA 16 CLA B 1 1116 36 CLA CLA . VA 16 CLA B 1 1117 37 CLA CLA . WA 16 CLA B 1 1118 38 CLA CLA . XA 16 CLA B 1 1119 39 CLA CLA . YA 16 CLA B 1 1120 40 CLA CLA . ZA 16 CLA B 1 1121 41 CLA CLA . AB 16 CLA B 1 1122 43 CLA CLA . BB 16 CLA C 1 1078 14 CLA CLA . CB 16 CLA C 1 1079 15 CLA CLA . DB 16 CLA C 1 1080 16 CLA CLA . EB 16 CLA C 1 1081 17 CLA CLA . FB 16 CLA C 1 1082 18 CLA CLA . GB 16 CLA C 1 1083 19 CLA CLA . HB 16 CLA C 1 1084 20 CLA CLA . IB 16 CLA C 1 1085 21 CLA CLA . JB 16 CLA C 1 1086 22 CLA CLA . KB 16 CLA C 1 1087 23 CLA CLA . LB 16 CLA C 1 1088 24 CLA CLA . MB 16 CLA C 1 1089 26 CLA CLA . NB 18 FE D 1 353 5 FE FE . OB 16 CLA D 1 354 7 CLA CLA . PB 16 CLA D 1 355 9 CLA CLA . QB 17 PHO D 1 356 10 PHO PHO . RB 16 CLA D 1 357 13 CLA CLA . SB 19 PLA D 1 358 46 PLA PLA . TB 20 BCR D 1 359 48 BCR BCR . UB 21 HEM E 1 84 44 HEM HEM . VB 16 CLA G 1 221 42 CLA CLA . WB 20 BCR K 1 47 47 BCR BCR . XB 21 HEM V 1 138 45 HEM HEM . YB 15 MN J 1 361 49 MN MN . ZB 15 MN J 1 362 50 MN MN . AC 15 MN J 1 363 51 MN MN . BC 15 MN J 1 364 52 MN MN . CC 16 CLA J 1 365 54 CLA CLA . DC 17 PHO J 1 366 59 PHO PHO . EC 16 CLA J 1 367 60 CLA CLA . FC 16 CLA J 1 368 73 CLA CLA . GC 16 CLA L 1 1107 75 CLA CLA . HC 16 CLA L 1 1108 76 CLA CLA . IC 16 CLA L 1 1109 77 CLA CLA . JC 16 CLA L 1 1110 78 CLA CLA . KC 16 CLA L 1 1111 79 CLA CLA . LC 16 CLA L 1 1112 80 CLA CLA . MC 16 CLA L 1 1113 81 CLA CLA . NC 16 CLA L 1 1114 82 CLA CLA . OC 16 CLA L 1 1115 83 CLA CLA . PC 16 CLA L 1 1116 84 CLA CLA . QC 16 CLA L 1 1117 85 CLA CLA . RC 16 CLA L 1 1118 86 CLA CLA . SC 16 CLA L 1 1119 87 CLA CLA . TC 16 CLA L 1 1120 88 CLA CLA . UC 16 CLA L 1 1121 89 CLA CLA . VC 16 CLA L 1 1122 91 CLA CLA . WC 16 CLA M 1 1078 62 CLA CLA . XC 16 CLA M 1 1079 63 CLA CLA . YC 16 CLA M 1 1080 65 CLA CLA . ZC 16 CLA M 1 1081 66 CLA CLA . AD 16 CLA M 1 1082 67 CLA CLA . BD 16 CLA M 1 1083 68 CLA CLA . CD 16 CLA M 1 1084 69 CLA CLA . DD 16 CLA M 1 1085 70 CLA CLA . ED 16 CLA M 1 1086 71 CLA CLA . FD 16 CLA M 1 1087 72 CLA CLA . GD 16 CLA M 1 1088 74 CLA CLA . HD 18 FE N 1 353 53 FE FE . ID 16 CLA N 1 354 55 CLA CLA . JD 16 CLA N 1 355 56 CLA CLA . KD 16 CLA N 1 356 57 CLA CLA . LD 17 PHO N 1 357 58 PHO PHO . MD 16 CLA N 1 358 61 CLA CLA . ND 19 PLA N 1 359 94 PLA PLA . OD 21 HEM P 1 92 92 HEM HEM . PD 16 CLA R 1 221 90 CLA CLA . QD 16 CLA W 1 64 64 CLA CLA . RD 21 HEM 0 1 138 93 HEM HEM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 BCR . . . WB 20 17.181 80.087 48.152 1 46.91 ? C7 BCR 47 K 1 HETATM 2 C C8 BCR . . . WB 20 18.051 79.069 48.152 1 46.91 ? C8 BCR 47 K 1 HETATM 3 C C9 BCR . . . WB 20 17.872 77.663 47.797 1 46.91 ? C9 BCR 47 K 1 HETATM 4 C C10 BCR . . . WB 20 18.962 76.887 47.973 1 46.91 ? C10 BCR 47 K 1 HETATM 5 C C11 BCR . . . WB 20 19.146 75.521 47.753 1 46.91 ? C11 BCR 47 K 1 HETATM 6 C C34 BCR . . . WB 20 16.547 77.118 47.332 1 46.91 ? C34 BCR 47 K 1 HETATM 7 C C12 BCR . . . WB 20 20.28 74.837 48.014 1 46.91 ? C12 BCR 47 K 1 HETATM 8 C C13 BCR . . . WB 20 20.524 73.448 47.809 1 46.91 ? C13 BCR 47 K 1 HETATM 9 C C14 BCR . . . WB 20 21.741 72.985 48.187 1 46.91 ? C14 BCR 47 K 1 HETATM 10 C C15 BCR . . . WB 20 22.275 71.687 48.143 1 46.91 ? C15 BCR 47 K 1 HETATM 11 C C16 BCR . . . WB 20 23.546 71.396 48.5 1 46.91 ? C16 BCR 47 K 1 HETATM 12 C C17 BCR . . . WB 20 24.344 72.257 49.278 1 46.91 ? C17 BCR 47 K 1 HETATM 13 C C18 BCR . . . WB 20 25.614 72.105 49.689 1 46.91 ? C18 BCR 47 K 1 HETATM 14 C C19 BCR . . . WB 20 26.146 73.098 50.546 1 46.91 ? C19 BCR 47 K 1 HETATM 15 C C20 BCR . . . WB 20 27.399 73.122 51.03 1 46.91 ? C20 BCR 47 K 1 HETATM 16 C C21 BCR . . . WB 20 27.898 73.965 52.018 1 46.91 ? C21 BCR 47 K 1 HETATM 17 C C22 BCR . . . WB 20 29.141 74.022 52.546 1 46.91 ? C22 BCR 47 K 1 HETATM 18 C C23 BCR . . . WB 20 29.288 74.864 53.657 1 46.91 ? C23 BCR 47 K 1 HETATM 19 C C24 BCR . . . WB 20 30.392 75.147 54.389 1 46.91 ? C24 BCR 47 K 1 HETATM 20 C C35 BCR . . . WB 20 19.466 72.555 47.207 1 46.91 ? C35 BCR 47 K 1 HETATM 21 C C36 BCR . . . WB 20 26.456 70.941 49.253 1 46.91 ? C36 BCR 47 K 1 HETATM 22 C C37 BCR . . . WB 20 30.312 73.213 52.011 1 46.91 ? C37 BCR 47 K 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 43 _model_server_stats.create_model_time_ms 100 _model_server_stats.query_time_ms 1196 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 22 #