data_1IZL
#
_model_server_result.job_id            59mDxYyjlCUzJs_L1kKNuw 
_model_server_result.datetime_utc      '2024-11-21 14:32:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1izl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"UB","auth_seq_id":84}' 
#
_entry.id    1IZL 
#
_exptl.entry_id    1IZL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          21 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1IZL 
_cell.length_a            129.377 
_cell.length_b            225.192 
_cell.length_c            308.672 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1IZL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    28-meric 
_pdbx_struct_assembly.oligomeric_count      28 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC,VC,WC,XC,YC,ZC,AD,BD,CD,DD,ED,FD,GD,HD,ID,JD,KD,LD,MD,ND,OD,PD,QD,RD 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 21 UB N N 
? 21 XB N N 
? 21 OD N N 
? 21 RD N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B CE2 PHE 65 B PHE 65 1_555 SA C3C CLA . B CLA 1114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.559 ? 
covale ? covale2 C CD2 TYR 274 C TYR 274 1_555 MB CBD CLA . C CLA 1089 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.243 ? 
covale ? covale3 C CE2 TYR 274 C TYR 274 1_555 MB CBD CLA . C CLA 1089 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.643 ? 
covale ? covale4 D CB PHE 188 D PHE 188 1_555 OB CAC CLA . D CLA 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? 
covale ? covale5 Q CA GLY 129 M GLY 129 1_555 FD CAB CLA . M CLA 1087 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? 
covale ? covale6 R CB PHE 188 N PHE 188 1_555 ID CAC CLA . N CLA 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? 
metalc ? metalc1 A OD1 ASP 170 A ASP 170 1_555 EA MN MN . A MN 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc2 A O ALA 344 A ALA 344 1_555 CA MN MN . A MN 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc3 M NE2 HIS 41 V HIS 41 1_555 XB FE HEM . V HEM 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? 
metalc ? metalc4 M NE2 HIS 92 V HIS 92 1_555 XB FE HEM . V HEM 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? 
metalc ? metalc5 O OD1 ASP 170 J ASP 170 1_555 AC MN MN . J MN 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc6 O O ALA 344 J ALA 344 1_555 YB MN MN . J MN 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? 
metalc ? metalc7 AA NE2 HIS 41 0 HIS 41 1_555 RD FE HEM . 0 HEM 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? 
metalc ? metalc8 AA NE2 HIS 92 0 HIS 92 1_555 RD FE HEM . 0 HEM 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 371 n n 
CHA C4D HEM doub 372 n n 
CHA HHA HEM sing 373 n n 
CHB C4A HEM sing 374 n n 
CHB C1B HEM doub 375 n n 
CHB HHB HEM sing 376 n n 
CHC C4B HEM sing 377 n n 
CHC C1C HEM doub 378 n n 
CHC HHC HEM sing 379 n n 
CHD C4C HEM doub 380 n n 
CHD C1D HEM sing 381 n n 
CHD HHD HEM sing 382 n n 
C1A C2A HEM doub 383 n y 
C1A NA HEM sing 384 n y 
C2A C3A HEM sing 385 n y 
C2A CAA HEM sing 386 n n 
C3A C4A HEM doub 387 n y 
C3A CMA HEM sing 388 n n 
C4A NA HEM sing 389 n y 
CMA HMA HEM sing 390 n n 
CMA HMAA HEM sing 391 n n 
CMA HMAB HEM sing 392 n n 
CAA CBA HEM sing 393 n n 
CAA HAA HEM sing 394 n n 
CAA HAAA HEM sing 395 n n 
CBA CGA HEM sing 396 n n 
CBA HBA HEM sing 397 n n 
CBA HBAA HEM sing 398 n n 
CGA O1A HEM doub 399 n n 
CGA O2A HEM sing 400 n n 
C1B C2B HEM sing 401 n n 
C1B NB HEM sing 402 n n 
C2B C3B HEM doub 403 n n 
C2B CMB HEM sing 404 n n 
C3B C4B HEM sing 405 n n 
C3B CAB HEM sing 406 n n 
C4B NB HEM doub 407 n n 
CMB HMB HEM sing 408 n n 
CMB HMBA HEM sing 409 n n 
CMB HMBB HEM sing 410 n n 
CAB CBB HEM doub 411 n n 
CAB HAB HEM sing 412 n n 
CBB HBB HEM sing 413 n n 
CBB HBBA HEM sing 414 n n 
C1C C2C HEM sing 415 n y 
C1C NC HEM sing 416 n y 
C2C C3C HEM doub 417 n y 
C2C CMC HEM sing 418 n n 
C3C C4C HEM sing 419 n y 
C3C CAC HEM sing 420 n n 
C4C NC HEM sing 421 n y 
CMC HMC HEM sing 422 n n 
CMC HMCA HEM sing 423 n n 
CMC HMCB HEM sing 424 n n 
CAC CBC HEM doub 425 n n 
CAC HAC HEM sing 426 n n 
CBC HBC HEM sing 427 n n 
CBC HBCA HEM sing 428 n n 
C1D C2D HEM sing 429 n n 
C1D ND HEM doub 430 n n 
C2D C3D HEM doub 431 n n 
C2D CMD HEM sing 432 n n 
C3D C4D HEM sing 433 n n 
C3D CAD HEM sing 434 n n 
C4D ND HEM sing 435 n n 
CMD HMD HEM sing 436 n n 
CMD HMDA HEM sing 437 n n 
CMD HMDB HEM sing 438 n n 
CAD CBD HEM sing 439 n n 
CAD HAD HEM sing 440 n n 
CAD HADA HEM sing 441 n n 
CBD CGD HEM sing 442 n n 
CBD HBD HEM sing 443 n n 
CBD HBDA HEM sing 444 n n 
CGD O1D HEM doub 445 n n 
CGD O2D HEM sing 446 n n 
O2A H2A HEM sing 447 n n 
O2D H2D HEM sing 448 n n 
FE NA HEM sing 449 n n 
FE NB HEM sing 450 n n 
FE NC HEM sing 451 n n 
FE ND HEM sing 452 n n 
#
_atom_sites.entry_id                     1IZL 
_atom_sites.fract_transf_matrix[1][1]    0.007729 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004441 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00324 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
CA 15 MN A 1 361 1 MN MN . 
DA 15 MN A 1 362 2 MN MN . 
EA 15 MN A 1 363 3 MN MN . 
FA 15 MN A 1 364 4 MN MN . 
GA 16 CLA A 1 365 6 CLA CLA . 
HA 16 CLA A 1 366 8 CLA CLA . 
IA 17 PHO A 1 367 11 PHO PHO . 
JA 16 CLA A 1 368 12 CLA CLA . 
KA 16 CLA A 1 369 25 CLA CLA . 
LA 16 CLA B 1 1107 27 CLA CLA . 
MA 16 CLA B 1 1108 28 CLA CLA . 
NA 16 CLA B 1 1109 29 CLA CLA . 
OA 16 CLA B 1 1110 30 CLA CLA . 
PA 16 CLA B 1 1111 31 CLA CLA . 
QA 16 CLA B 1 1112 32 CLA CLA . 
RA 16 CLA B 1 1113 33 CLA CLA . 
SA 16 CLA B 1 1114 34 CLA CLA . 
TA 16 CLA B 1 1115 35 CLA CLA . 
UA 16 CLA B 1 1116 36 CLA CLA . 
VA 16 CLA B 1 1117 37 CLA CLA . 
WA 16 CLA B 1 1118 38 CLA CLA . 
XA 16 CLA B 1 1119 39 CLA CLA . 
YA 16 CLA B 1 1120 40 CLA CLA . 
ZA 16 CLA B 1 1121 41 CLA CLA . 
AB 16 CLA B 1 1122 43 CLA CLA . 
BB 16 CLA C 1 1078 14 CLA CLA . 
CB 16 CLA C 1 1079 15 CLA CLA . 
DB 16 CLA C 1 1080 16 CLA CLA . 
EB 16 CLA C 1 1081 17 CLA CLA . 
FB 16 CLA C 1 1082 18 CLA CLA . 
GB 16 CLA C 1 1083 19 CLA CLA . 
HB 16 CLA C 1 1084 20 CLA CLA . 
IB 16 CLA C 1 1085 21 CLA CLA . 
JB 16 CLA C 1 1086 22 CLA CLA . 
KB 16 CLA C 1 1087 23 CLA CLA . 
LB 16 CLA C 1 1088 24 CLA CLA . 
MB 16 CLA C 1 1089 26 CLA CLA . 
NB 18 FE D 1 353 5 FE FE . 
OB 16 CLA D 1 354 7 CLA CLA . 
PB 16 CLA D 1 355 9 CLA CLA . 
QB 17 PHO D 1 356 10 PHO PHO . 
RB 16 CLA D 1 357 13 CLA CLA . 
SB 19 PLA D 1 358 46 PLA PLA . 
TB 20 BCR D 1 359 48 BCR BCR . 
UB 21 HEM E 1 84 44 HEM HEM . 
VB 16 CLA G 1 221 42 CLA CLA . 
WB 20 BCR K 1 47 47 BCR BCR . 
XB 21 HEM V 1 138 45 HEM HEM . 
YB 15 MN J 1 361 49 MN MN . 
ZB 15 MN J 1 362 50 MN MN . 
AC 15 MN J 1 363 51 MN MN . 
BC 15 MN J 1 364 52 MN MN . 
CC 16 CLA J 1 365 54 CLA CLA . 
DC 17 PHO J 1 366 59 PHO PHO . 
EC 16 CLA J 1 367 60 CLA CLA . 
FC 16 CLA J 1 368 73 CLA CLA . 
GC 16 CLA L 1 1107 75 CLA CLA . 
HC 16 CLA L 1 1108 76 CLA CLA . 
IC 16 CLA L 1 1109 77 CLA CLA . 
JC 16 CLA L 1 1110 78 CLA CLA . 
KC 16 CLA L 1 1111 79 CLA CLA . 
LC 16 CLA L 1 1112 80 CLA CLA . 
MC 16 CLA L 1 1113 81 CLA CLA . 
NC 16 CLA L 1 1114 82 CLA CLA . 
OC 16 CLA L 1 1115 83 CLA CLA . 
PC 16 CLA L 1 1116 84 CLA CLA . 
QC 16 CLA L 1 1117 85 CLA CLA . 
RC 16 CLA L 1 1118 86 CLA CLA . 
SC 16 CLA L 1 1119 87 CLA CLA . 
TC 16 CLA L 1 1120 88 CLA CLA . 
UC 16 CLA L 1 1121 89 CLA CLA . 
VC 16 CLA L 1 1122 91 CLA CLA . 
WC 16 CLA M 1 1078 62 CLA CLA . 
XC 16 CLA M 1 1079 63 CLA CLA . 
YC 16 CLA M 1 1080 65 CLA CLA . 
ZC 16 CLA M 1 1081 66 CLA CLA . 
AD 16 CLA M 1 1082 67 CLA CLA . 
BD 16 CLA M 1 1083 68 CLA CLA . 
CD 16 CLA M 1 1084 69 CLA CLA . 
DD 16 CLA M 1 1085 70 CLA CLA . 
ED 16 CLA M 1 1086 71 CLA CLA . 
FD 16 CLA M 1 1087 72 CLA CLA . 
GD 16 CLA M 1 1088 74 CLA CLA . 
HD 18 FE N 1 353 53 FE FE . 
ID 16 CLA N 1 354 55 CLA CLA . 
JD 16 CLA N 1 355 56 CLA CLA . 
KD 16 CLA N 1 356 57 CLA CLA . 
LD 17 PHO N 1 357 58 PHO PHO . 
MD 16 CLA N 1 358 61 CLA CLA . 
ND 19 PLA N 1 359 94 PLA PLA . 
OD 21 HEM P 1 92 92 HEM HEM . 
PD 16 CLA R 1 221 90 CLA CLA . 
QD 16 CLA W 1 64 64 CLA CLA . 
RD 21 HEM 0 1 138 93 HEM HEM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . UB 21 6.435 87.426 53.004 1 46.91 ? CHA HEM 84 E 1 
HETATM 2 C CHB HEM . . . UB 21 4.913 89.079 48.662 1 46.91 ? CHB HEM 84 E 1 
HETATM 3 C CHC HEM . . . UB 21 9.461 89.35 47.197 1 46.91 ? CHC HEM 84 E 1 
HETATM 4 C CHD HEM . . . UB 21 10.936 87.287 51.339 1 46.91 ? CHD HEM 84 E 1 
HETATM 5 C C1A HEM . . . UB 21 5.554 87.894 52.012 1 46.91 ? C1A HEM 84 E 1 
HETATM 6 C C2A HEM . . . UB 21 4.046 88.083 52.13 1 46.91 ? C2A HEM 84 E 1 
HETATM 7 C C3A HEM . . . UB 21 3.62 88.477 50.773 1 46.91 ? C3A HEM 84 E 1 
HETATM 8 C C4A HEM . . . UB 21 4.895 88.555 49.961 1 46.91 ? C4A HEM 84 E 1 
HETATM 9 C C1B HEM . . . UB 21 5.999 89.36 47.832 1 46.91 ? C1B HEM 84 E 1 
HETATM 10 C C2B HEM . . . UB 21 5.952 89.952 46.571 1 46.91 ? C2B HEM 84 E 1 
HETATM 11 C C3B HEM . . . UB 21 7.292 90.086 46.132 1 46.91 ? C3B HEM 84 E 1 
HETATM 12 C C4B HEM . . . UB 21 8.075 89.546 47.17 1 46.91 ? C4B HEM 84 E 1 
HETATM 13 C C1C HEM . . . UB 21 10.3 88.771 48.147 1 46.91 ? C1C HEM 84 E 1 
HETATM 14 C C2C HEM . . . UB 21 11.806 88.66 47.976 1 46.91 ? C2C HEM 84 E 1 
HETATM 15 C C3C HEM . . . UB 21 12.267 88.023 49.234 1 46.91 ? C3C HEM 84 E 1 
HETATM 16 C C4C HEM . . . UB 21 10.987 87.799 50.038 1 46.91 ? C4C HEM 84 E 1 
HETATM 17 C C1D HEM . . . UB 21 9.802 87.155 52.146 1 46.91 ? C1D HEM 84 E 1 
HETATM 18 C C2D HEM . . . UB 21 9.785 86.684 53.442 1 46.91 ? C2D HEM 84 E 1 
HETATM 19 C C3D HEM . . . UB 21 8.48 86.711 53.981 1 46.91 ? C3D HEM 84 E 1 
HETATM 20 C C4D HEM . . . UB 21 7.799 87.237 52.872 1 46.91 ? C4D HEM 84 E 1 
HETATM 21 N NA HEM . . . UB 21 5.992 88.201 50.725 1 46.91 ? NA HEM 84 E 1 
HETATM 22 N NB HEM . . . UB 21 7.288 89.107 48.214 1 46.91 ? NB HEM 84 E 1 
HETATM 23 N NC HEM . . . UB 21 9.88 88.253 49.349 1 46.91 ? NC HEM 84 E 1 
HETATM 24 N ND HEM . . . UB 21 8.549 87.501 51.787 1 46.91 ? ND HEM 84 E 1 
HETATM 25 FE FE HEM . . . UB 21 7.867 88.156 50.028 1 46.91 ? FE HEM 84 E 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           25 
#