data_1J04 # _model_server_result.job_id tkdduXbzH0AEkA212dqvKw _model_server_result.datetime_utc '2024-11-29 23:26:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1j04 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1004}' # _entry.id 1J04 # _exptl.entry_id 1J04 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1J04 _cell.length_a 89.491 _cell.length_b 89.491 _cell.length_c 142.823 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1J04 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_644 y+1,x-1,-z-1 0 1 0 1 0 0 0 0 -1 89.491 -89.491 -142.823 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 208 A GLN 208 1_555 A N LLP 209 A LLP 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C LLP 209 A LLP 209 1_555 A N ALA 210 A ALA 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 139 n n C1 C2 GOL sing 140 n n C1 H11 GOL sing 141 n n C1 H12 GOL sing 142 n n O1 HO1 GOL sing 143 n n C2 O2 GOL sing 144 n n C2 C3 GOL sing 145 n n C2 H2 GOL sing 146 n n O2 HO2 GOL sing 147 n n C3 O3 GOL sing 148 n n C3 H31 GOL sing 149 n n C3 H32 GOL sing 150 n n O3 HO3 GOL sing 151 n n # _atom_sites.entry_id 1J04 _atom_sites.fract_transf_matrix[1][1] 0.011174 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011174 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007002 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AOA A 1 1001 1001 AOA AOA . C 3 GOL A 1 1002 1002 GOL GOL . D 3 GOL A 1 1003 1003 GOL GOL . E 3 GOL A 1 1004 1004 GOL GOL . F 3 GOL A 1 1006 1006 GOL GOL . G 3 GOL A 1 1007 1007 GOL GOL . H 3 GOL A 1 1008 1008 GOL GOL . I 3 GOL A 1 1009 1009 GOL GOL . J 4 HOH A 1 1010 1 HOH TIP . J 4 HOH A 2 1011 2 HOH TIP . J 4 HOH A 3 1012 3 HOH TIP . J 4 HOH A 4 1013 4 HOH TIP . J 4 HOH A 5 1014 5 HOH TIP . J 4 HOH A 6 1015 6 HOH TIP . J 4 HOH A 7 1016 7 HOH TIP . J 4 HOH A 8 1017 8 HOH TIP . J 4 HOH A 9 1018 9 HOH TIP . J 4 HOH A 10 1019 10 HOH TIP . J 4 HOH A 11 1020 11 HOH TIP . J 4 HOH A 12 1021 12 HOH TIP . J 4 HOH A 13 1022 13 HOH TIP . J 4 HOH A 14 1023 14 HOH TIP . J 4 HOH A 15 1024 15 HOH TIP . J 4 HOH A 16 1025 16 HOH TIP . J 4 HOH A 17 1026 17 HOH TIP . J 4 HOH A 18 1027 18 HOH TIP . J 4 HOH A 19 1028 19 HOH TIP . J 4 HOH A 20 1029 20 HOH TIP . J 4 HOH A 21 1030 21 HOH TIP . J 4 HOH A 22 1031 22 HOH TIP . J 4 HOH A 23 1032 23 HOH TIP . J 4 HOH A 24 1033 24 HOH TIP . J 4 HOH A 25 1034 25 HOH TIP . J 4 HOH A 26 1035 26 HOH TIP . J 4 HOH A 27 1036 27 HOH TIP . J 4 HOH A 28 1037 28 HOH TIP . J 4 HOH A 29 1038 29 HOH TIP . J 4 HOH A 30 1039 30 HOH TIP . J 4 HOH A 31 1040 31 HOH TIP . J 4 HOH A 32 1041 32 HOH TIP . J 4 HOH A 33 1042 33 HOH TIP . J 4 HOH A 34 1043 34 HOH TIP . J 4 HOH A 35 1044 35 HOH TIP . J 4 HOH A 36 1045 36 HOH TIP . J 4 HOH A 37 1046 37 HOH TIP . J 4 HOH A 38 1047 38 HOH TIP . J 4 HOH A 39 1048 39 HOH TIP . J 4 HOH A 40 1049 40 HOH TIP . J 4 HOH A 41 1050 41 HOH TIP . J 4 HOH A 42 1051 42 HOH TIP . J 4 HOH A 43 1052 43 HOH TIP . J 4 HOH A 44 1053 44 HOH TIP . J 4 HOH A 45 1054 45 HOH TIP . J 4 HOH A 46 1055 46 HOH TIP . J 4 HOH A 47 1056 47 HOH TIP . J 4 HOH A 48 1057 48 HOH TIP . J 4 HOH A 49 1058 49 HOH TIP . J 4 HOH A 50 1059 50 HOH TIP . J 4 HOH A 51 1060 51 HOH TIP . J 4 HOH A 52 1061 52 HOH TIP . J 4 HOH A 53 1062 53 HOH TIP . J 4 HOH A 54 1063 54 HOH TIP . J 4 HOH A 55 1064 55 HOH TIP . J 4 HOH A 56 1065 56 HOH TIP . J 4 HOH A 57 1066 57 HOH TIP . J 4 HOH A 58 1067 58 HOH TIP . J 4 HOH A 59 1068 59 HOH TIP . J 4 HOH A 60 1069 60 HOH TIP . J 4 HOH A 61 1070 61 HOH TIP . J 4 HOH A 62 1071 62 HOH TIP . J 4 HOH A 63 1072 63 HOH TIP . J 4 HOH A 64 1073 64 HOH TIP . J 4 HOH A 65 1074 65 HOH TIP . J 4 HOH A 66 1075 66 HOH TIP . J 4 HOH A 67 1076 67 HOH TIP . J 4 HOH A 68 1077 68 HOH TIP . J 4 HOH A 69 1078 69 HOH TIP . J 4 HOH A 70 1079 70 HOH TIP . J 4 HOH A 71 1080 71 HOH TIP . J 4 HOH A 72 1081 72 HOH TIP . J 4 HOH A 73 1082 73 HOH TIP . J 4 HOH A 74 1083 74 HOH TIP . J 4 HOH A 75 1084 75 HOH TIP . J 4 HOH A 76 1085 76 HOH TIP . J 4 HOH A 77 1086 77 HOH TIP . J 4 HOH A 78 1087 78 HOH TIP . J 4 HOH A 79 1088 79 HOH TIP . J 4 HOH A 80 1089 80 HOH TIP . J 4 HOH A 81 1090 81 HOH TIP . J 4 HOH A 82 1091 82 HOH TIP . J 4 HOH A 83 1092 83 HOH TIP . J 4 HOH A 84 1093 84 HOH TIP . J 4 HOH A 85 1094 85 HOH TIP . J 4 HOH A 86 1095 86 HOH TIP . J 4 HOH A 87 1096 87 HOH TIP . J 4 HOH A 88 1097 88 HOH TIP . J 4 HOH A 89 1098 89 HOH TIP . J 4 HOH A 90 1099 90 HOH TIP . J 4 HOH A 91 1100 91 HOH TIP . J 4 HOH A 92 1101 92 HOH TIP . J 4 HOH A 93 1102 93 HOH TIP . J 4 HOH A 94 1103 94 HOH TIP . J 4 HOH A 95 1104 95 HOH TIP . J 4 HOH A 96 1105 96 HOH TIP . J 4 HOH A 97 1106 97 HOH TIP . J 4 HOH A 98 1107 98 HOH TIP . J 4 HOH A 99 1108 99 HOH TIP . J 4 HOH A 100 1109 100 HOH TIP . J 4 HOH A 101 1110 101 HOH TIP . J 4 HOH A 102 1111 102 HOH TIP . J 4 HOH A 103 1112 103 HOH TIP . J 4 HOH A 104 1113 104 HOH TIP . J 4 HOH A 105 1114 105 HOH TIP . J 4 HOH A 106 1115 106 HOH TIP . J 4 HOH A 107 1116 107 HOH TIP . J 4 HOH A 108 1117 108 HOH TIP . J 4 HOH A 109 1118 109 HOH TIP . J 4 HOH A 110 1119 110 HOH TIP . J 4 HOH A 111 1120 111 HOH TIP . J 4 HOH A 112 1121 112 HOH TIP . J 4 HOH A 113 1122 113 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 99.174 33.926 -71.063 1 56.93 ? C1 GOL 1004 A 1 HETATM 2 O O1 GOL . . . E 3 98.437 34.973 -71.709 1 56.5 ? O1 GOL 1004 A 1 HETATM 3 C C2 GOL . . . E 3 99.075 34.038 -69.527 1 57.41 ? C2 GOL 1004 A 1 HETATM 4 O O2 GOL . . . E 3 97.781 34.438 -69.052 1 60.56 ? O2 GOL 1004 A 1 HETATM 5 C C3 GOL . . . E 3 99.46 32.697 -68.883 1 57.98 ? C3 GOL 1004 A 1 HETATM 6 O O3 GOL . . . E 3 98.564 31.628 -69.208 1 55.9 ? O3 GOL 1004 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #