data_1J14 # _model_server_result.job_id 2RHCpnkAU7NEL0VsBypT4w _model_server_result.datetime_utc '2024-11-07 13:34:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1j14 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 1J14 # _exptl.entry_id 1J14 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 120.152 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZAMIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1J14 _cell.length_a 124.52 _cell.length_b 124.52 _cell.length_c 124.52 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1J14 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc4 A OE1 GLU 59 A GLU 77 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc5 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc6 E O HOH . A HOH 261 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? # _chem_comp.formula 'C7 H8 N2' _chem_comp.formula_weight 120.152 _chem_comp.id BEN _chem_comp.mon_nstd_flag . _chem_comp.name BENZAMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BEN doub 70 n y C1 C6 BEN sing 71 n y C1 C BEN sing 72 n n C2 C3 BEN sing 73 n y C2 H2 BEN sing 74 n n C3 C4 BEN doub 75 n y C3 H3 BEN sing 76 n n C4 C5 BEN sing 77 n y C4 H4 BEN sing 78 n n C5 C6 BEN doub 79 n y C5 H5 BEN sing 80 n n C6 H6 BEN sing 81 n n C N1 BEN doub 82 e n C N2 BEN sing 83 n n N1 HN1 BEN sing 84 n n N2 HN21 BEN sing 85 n n N2 HN22 BEN sing 86 n n # _atom_sites.entry_id 1J14 _atom_sites.fract_transf_matrix[1][1] 0.008031 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008031 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008031 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 480 480 CA CA . C 3 SO4 A 1 600 600 SO4 SO4 . D 4 BEN A 1 1 1 BEN BEN . E 5 HOH A 1 249 249 HOH HOH . E 5 HOH A 2 250 250 HOH HOH . E 5 HOH A 3 251 251 HOH HOH . E 5 HOH A 4 252 252 HOH HOH . E 5 HOH A 5 253 253 HOH HOH . E 5 HOH A 6 255 255 HOH HOH . E 5 HOH A 7 256 256 HOH HOH . E 5 HOH A 8 257 257 HOH HOH . E 5 HOH A 9 259 259 HOH HOH . E 5 HOH A 10 260 260 HOH HOH . E 5 HOH A 11 261 261 HOH HOH . E 5 HOH A 12 262 262 HOH HOH . E 5 HOH A 13 264 264 HOH HOH . E 5 HOH A 14 266 266 HOH HOH . E 5 HOH A 15 267 267 HOH HOH . E 5 HOH A 16 269 269 HOH HOH . E 5 HOH A 17 272 272 HOH HOH . E 5 HOH A 18 273 273 HOH HOH . E 5 HOH A 19 275 275 HOH HOH . E 5 HOH A 20 276 276 HOH HOH . E 5 HOH A 21 280 280 HOH HOH . E 5 HOH A 22 281 281 HOH HOH . E 5 HOH A 23 282 282 HOH HOH . E 5 HOH A 24 283 283 HOH HOH . E 5 HOH A 25 284 284 HOH HOH . E 5 HOH A 26 286 286 HOH HOH . E 5 HOH A 27 287 287 HOH HOH . E 5 HOH A 28 288 288 HOH HOH . E 5 HOH A 29 290 290 HOH HOH . E 5 HOH A 30 291 291 HOH HOH . E 5 HOH A 31 292 292 HOH HOH . E 5 HOH A 32 294 294 HOH HOH . E 5 HOH A 33 298 298 HOH HOH . E 5 HOH A 34 303 303 HOH HOH . E 5 HOH A 35 306 306 HOH HOH . E 5 HOH A 36 307 307 HOH HOH . E 5 HOH A 37 309 309 HOH HOH . E 5 HOH A 38 311 311 HOH HOH . E 5 HOH A 39 312 312 HOH HOH . E 5 HOH A 40 313 313 HOH HOH . E 5 HOH A 41 318 318 HOH HOH . E 5 HOH A 42 319 319 HOH HOH . E 5 HOH A 43 320 320 HOH HOH . E 5 HOH A 44 324 324 HOH HOH . E 5 HOH A 45 327 327 HOH HOH . E 5 HOH A 46 329 329 HOH HOH . E 5 HOH A 47 332 332 HOH HOH . E 5 HOH A 48 335 335 HOH HOH . E 5 HOH A 49 341 341 HOH HOH . E 5 HOH A 50 342 342 HOH HOH . E 5 HOH A 51 343 343 HOH HOH . E 5 HOH A 52 347 347 HOH HOH . E 5 HOH A 53 356 356 HOH HOH . E 5 HOH A 54 358 358 HOH HOH . E 5 HOH A 55 370 370 HOH HOH . E 5 HOH A 56 371 371 HOH HOH . E 5 HOH A 57 377 377 HOH HOH . E 5 HOH A 58 385 385 HOH HOH . E 5 HOH A 59 502 502 HOH HOH . E 5 HOH A 60 705 705 HOH HOH . E 5 HOH A 61 724 724 HOH HOH . E 5 HOH A 62 725 725 HOH HOH . E 5 HOH A 63 726 726 HOH HOH . E 5 HOH A 64 729 729 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BEN . . . D 4 7.723 50.404 55.533 1 7.42 ? C1 BEN 1 A 1 HETATM 2 C C2 BEN . . . D 4 7.713 49.261 54.711 1 10.96 ? C2 BEN 1 A 1 HETATM 3 C C3 BEN . . . D 4 7.859 47.978 55.27 1 7.21 ? C3 BEN 1 A 1 HETATM 4 C C4 BEN . . . D 4 8.007 47.833 56.661 1 12.41 ? C4 BEN 1 A 1 HETATM 5 C C5 BEN . . . D 4 8.012 48.971 57.487 1 10.23 ? C5 BEN 1 A 1 HETATM 6 C C6 BEN . . . D 4 7.875 50.25 56.922 1 7.89 ? C6 BEN 1 A 1 HETATM 7 C C BEN . . . D 4 7.569 51.787 54.928 1 6 ? C BEN 1 A 1 HETATM 8 N N1 BEN . . . D 4 7.216 52.792 55.69 1 6 ? N1 BEN 1 A 1 HETATM 9 N N2 BEN . . . D 4 7.802 51.953 53.658 1 6 ? N2 BEN 1 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #