data_1J15
#
_model_server_result.job_id            MQ7tmQ09R0UTsvVMrK-WZA 
_model_server_result.datetime_utc      '2024-12-02 13:25:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1j15 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":2}' 
#
_entry.id    1J15 
#
_exptl.entry_id    1J15 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              120.152 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BENZAMIDINE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1J15 
_cell.length_a            124.7 
_cell.length_b            124.7 
_cell.length_c            124.7 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1J15 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        197 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 3' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc1 A OE1 GLU 52 A GLU 70 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc2 A O ASN 54 A ASN 72 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc3 A O VAL 57 A VAL 75 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc4 A OE1 GLU 59 A GLU 77 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? 
metalc ? metalc5 A OE2 GLU 62 A GLU 80 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc6 G O HOH . A HOH 261 1_555 B CA CA . A CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
#
_chem_comp.formula           'C7 H8 N2' 
_chem_comp.formula_weight    120.152 
_chem_comp.id                BEN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BENZAMIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BEN doub 70 n y 
C1 C6 BEN sing 71 n y 
C1 C BEN sing 72 n n 
C2 C3 BEN sing 73 n y 
C2 H2 BEN sing 74 n n 
C3 C4 BEN doub 75 n y 
C3 H3 BEN sing 76 n n 
C4 C5 BEN sing 77 n y 
C4 H4 BEN sing 78 n n 
C5 C6 BEN doub 79 n y 
C5 H5 BEN sing 80 n n 
C6 H6 BEN sing 81 n n 
C N1 BEN doub 82 e n 
C N2 BEN sing 83 n n 
N1 HN1 BEN sing 84 n n 
N2 HN21 BEN sing 85 n n 
N2 HN22 BEN sing 86 n n 
#
_atom_sites.entry_id                     1J15 
_atom_sites.fract_transf_matrix[1][1]    0.008019 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008019 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008019 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 480 480 CA CA . 
C 3 SO4 A 1 600 600 SO4 SO4 . 
D 4 BEN A 1 1 1 BEN BEN . 
E 4 BEN A 1 2 2 BEN BEN . 
F 4 BEN A 1 3 3 BEN BEN . 
G 5 HOH A 1 249 249 HOH HOH . 
G 5 HOH A 2 250 250 HOH HOH . 
G 5 HOH A 3 251 251 HOH HOH . 
G 5 HOH A 4 252 252 HOH HOH . 
G 5 HOH A 5 253 253 HOH HOH . 
G 5 HOH A 6 255 255 HOH HOH . 
G 5 HOH A 7 256 256 HOH HOH . 
G 5 HOH A 8 257 257 HOH HOH . 
G 5 HOH A 9 259 259 HOH HOH . 
G 5 HOH A 10 260 260 HOH HOH . 
G 5 HOH A 11 261 261 HOH HOH . 
G 5 HOH A 12 262 262 HOH HOH . 
G 5 HOH A 13 264 264 HOH HOH . 
G 5 HOH A 14 266 266 HOH HOH . 
G 5 HOH A 15 267 267 HOH HOH . 
G 5 HOH A 16 269 269 HOH HOH . 
G 5 HOH A 17 272 272 HOH HOH . 
G 5 HOH A 18 273 273 HOH HOH . 
G 5 HOH A 19 275 275 HOH HOH . 
G 5 HOH A 20 276 276 HOH HOH . 
G 5 HOH A 21 280 280 HOH HOH . 
G 5 HOH A 22 281 281 HOH HOH . 
G 5 HOH A 23 282 282 HOH HOH . 
G 5 HOH A 24 283 283 HOH HOH . 
G 5 HOH A 25 284 284 HOH HOH . 
G 5 HOH A 26 286 286 HOH HOH . 
G 5 HOH A 27 287 287 HOH HOH . 
G 5 HOH A 28 288 288 HOH HOH . 
G 5 HOH A 29 290 290 HOH HOH . 
G 5 HOH A 30 291 291 HOH HOH . 
G 5 HOH A 31 292 292 HOH HOH . 
G 5 HOH A 32 294 294 HOH HOH . 
G 5 HOH A 33 298 298 HOH HOH . 
G 5 HOH A 34 303 303 HOH HOH . 
G 5 HOH A 35 306 306 HOH HOH . 
G 5 HOH A 36 307 307 HOH HOH . 
G 5 HOH A 37 309 309 HOH HOH . 
G 5 HOH A 38 311 311 HOH HOH . 
G 5 HOH A 39 313 313 HOH HOH . 
G 5 HOH A 40 318 318 HOH HOH . 
G 5 HOH A 41 319 319 HOH HOH . 
G 5 HOH A 42 324 324 HOH HOH . 
G 5 HOH A 43 327 327 HOH HOH . 
G 5 HOH A 44 329 329 HOH HOH . 
G 5 HOH A 45 332 332 HOH HOH . 
G 5 HOH A 46 335 335 HOH HOH . 
G 5 HOH A 47 341 341 HOH HOH . 
G 5 HOH A 48 342 342 HOH HOH . 
G 5 HOH A 49 343 343 HOH HOH . 
G 5 HOH A 50 347 347 HOH HOH . 
G 5 HOH A 51 356 356 HOH HOH . 
G 5 HOH A 52 358 358 HOH HOH . 
G 5 HOH A 53 370 370 HOH HOH . 
G 5 HOH A 54 371 371 HOH HOH . 
G 5 HOH A 55 377 377 HOH HOH . 
G 5 HOH A 56 385 385 HOH HOH . 
G 5 HOH A 57 416 416 HOH HOH . 
G 5 HOH A 58 502 502 HOH HOH . 
G 5 HOH A 59 705 705 HOH HOH . 
G 5 HOH A 60 723 723 HOH HOH . 
G 5 HOH A 61 725 725 HOH HOH . 
G 5 HOH A 62 726 726 HOH HOH . 
G 5 HOH A 63 727 727 HOH HOH . 
G 5 HOH A 64 728 728 HOH HOH . 
G 5 HOH A 65 729 729 HOH HOH . 
G 5 HOH A 66 1002 1002 HOH HOH . 
G 5 HOH A 67 1003 1003 HOH HOH . 
G 5 HOH A 68 1004 1004 HOH HOH . 
G 5 HOH A 69 1005 1005 HOH HOH . 
G 5 HOH A 70 1006 1006 HOH HOH . 
G 5 HOH A 71 1007 1007 HOH HOH . 
G 5 HOH A 72 1008 1008 HOH HOH . 
G 5 HOH A 73 1010 1010 HOH HOH . 
G 5 HOH A 74 1011 1011 HOH HOH . 
G 5 HOH A 75 1013 1013 HOH HOH . 
G 5 HOH A 76 1015 1015 HOH HOH . 
G 5 HOH A 77 1018 1018 HOH HOH . 
G 5 HOH A 78 1019 1019 HOH HOH . 
G 5 HOH A 79 1020 1020 HOH HOH . 
G 5 HOH A 80 1021 1021 HOH HOH . 
G 5 HOH A 81 1022 1022 HOH HOH . 
G 5 HOH A 82 1023 1023 HOH HOH . 
G 5 HOH A 83 1024 1024 HOH HOH . 
G 5 HOH A 84 1025 1025 HOH HOH . 
G 5 HOH A 85 1027 1027 HOH HOH . 
G 5 HOH A 86 1031 1031 HOH HOH . 
G 5 HOH A 87 1032 1032 HOH HOH . 
G 5 HOH A 88 1033 1033 HOH HOH . 
G 5 HOH A 89 1038 1038 HOH HOH . 
G 5 HOH A 90 1039 1039 HOH HOH . 
G 5 HOH A 91 1043 1043 HOH HOH . 
G 5 HOH A 92 1044 1044 HOH HOH . 
G 5 HOH A 93 1046 1046 HOH HOH . 
G 5 HOH A 94 1047 1047 HOH HOH . 
G 5 HOH A 95 1049 1049 HOH HOH . 
G 5 HOH A 96 1051 1051 HOH HOH . 
G 5 HOH A 97 1053 1053 HOH HOH . 
G 5 HOH A 98 1058 1058 HOH HOH . 
G 5 HOH A 99 1060 1060 HOH HOH . 
G 5 HOH A 100 1063 1063 HOH HOH . 
G 5 HOH A 101 1064 1064 HOH HOH . 
G 5 HOH A 102 1070 1070 HOH HOH . 
G 5 HOH A 103 1071 1071 HOH HOH . 
G 5 HOH A 104 1073 1073 HOH HOH . 
G 5 HOH A 105 1074 1074 HOH HOH . 
G 5 HOH A 106 1076 1076 HOH HOH . 
G 5 HOH A 107 1077 1077 HOH HOH . 
G 5 HOH A 108 1078 1078 HOH HOH . 
G 5 HOH A 109 1081 1081 HOH HOH . 
G 5 HOH A 110 1084 1084 HOH HOH . 
G 5 HOH A 111 1086 1086 HOH HOH . 
G 5 HOH A 112 1089 1089 HOH HOH . 
G 5 HOH A 113 1091 1091 HOH HOH . 
G 5 HOH A 114 1096 1096 HOH HOH . 
G 5 HOH A 115 1099 1099 HOH HOH . 
G 5 HOH A 116 1100 1100 HOH HOH . 
G 5 HOH A 117 1103 1103 HOH HOH . 
G 5 HOH A 118 1104 1104 HOH HOH . 
G 5 HOH A 119 1105 1105 HOH HOH . 
G 5 HOH A 120 1108 1108 HOH HOH . 
G 5 HOH A 121 1109 1109 HOH HOH . 
G 5 HOH A 122 1110 1110 HOH HOH . 
G 5 HOH A 123 1115 1115 HOH HOH . 
G 5 HOH A 124 1117 1117 HOH HOH . 
G 5 HOH A 125 1118 1118 HOH HOH . 
G 5 HOH A 126 1124 1124 HOH HOH . 
G 5 HOH A 127 1126 1126 HOH HOH . 
G 5 HOH A 128 1146 1146 HOH HOH . 
G 5 HOH A 129 1148 1148 HOH HOH . 
G 5 HOH A 130 1150 1150 HOH HOH . 
G 5 HOH A 131 1153 1153 HOH HOH . 
G 5 HOH A 132 1177 1177 HOH HOH . 
G 5 HOH A 133 1180 1180 HOH HOH . 
G 5 HOH A 134 1183 1183 HOH HOH . 
G 5 HOH A 135 1191 1191 HOH HOH . 
G 5 HOH A 136 1201 1201 HOH HOH . 
G 5 HOH A 137 1221 1221 HOH HOH . 
G 5 HOH A 138 2002 2002 HOH HOH . 
G 5 HOH A 139 2008 2008 HOH HOH . 
G 5 HOH A 140 2013 2013 HOH HOH . 
G 5 HOH A 141 2021 2021 HOH HOH . 
G 5 HOH A 142 2053 2053 HOH HOH . 
G 5 HOH A 143 2073 2073 HOH HOH . 
G 5 HOH A 144 2078 2078 HOH HOH . 
G 5 HOH A 145 2087 2087 HOH HOH . 
G 5 HOH A 146 2132 2132 HOH HOH . 
G 5 HOH A 147 2208 2208 HOH HOH . 
G 5 HOH A 148 2210 2210 HOH HOH . 
G 5 HOH A 149 2211 2211 HOH HOH . 
G 5 HOH A 150 2213 2213 HOH HOH . 
G 5 HOH A 151 2222 2222 HOH HOH . 
G 5 HOH A 152 2223 2223 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BEN . . . E 4 0.05 62.188 58.802 0.5 13.49 ? C1 BEN 2 A 1 
HETATM 2 C C2 BEN . . . E 4 -0.019 63.401 58.113 0.5 13 ? C2 BEN 2 A 1 
HETATM 3 C C3 BEN . . . E 4 0.009 63.421 56.718 0.5 13.99 ? C3 BEN 2 A 1 
HETATM 4 C C4 BEN . . . E 4 -0.025 62.223 56.001 0.5 12.81 ? C4 BEN 2 A 1 
HETATM 5 C C5 BEN . . . E 4 -0.005 61.007 56.686 0.5 14.56 ? C5 BEN 2 A 1 
HETATM 6 C C6 BEN . . . E 4 0.004 60.99 58.082 0.5 12.7 ? C6 BEN 2 A 1 
HETATM 7 C C BEN . . . E 4 0.043 62.169 60.321 0.5 12.96 ? C BEN 2 A 1 
HETATM 8 N N1 BEN . . . E 4 -0.29 61.07 60.939 0.5 12.8 ? N1 BEN 2 A 1 
HETATM 9 N N2 BEN . . . E 4 0.136 63.297 60.97 0.5 11.1 ? N2 BEN 2 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           9 
#