data_1J17 # _model_server_result.job_id 9rlGCqkbEGkTJjibD2tZaw _model_server_result.datetime_utc '2024-12-02 12:07:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1j17 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 1J17 # _exptl.entry_id 1J17 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 499.025 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "[4-(6-CHLORO-NAPHTHALENE-2-SULFONYL)-PIPERAZIN-1-YL]- (3,4,5,6-TETRAHYDRO-2H-[1,4']BIPYRIDINYL-4-YL)- METHANONE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1J17 _cell.length_a 124.78 _cell.length_b 124.78 _cell.length_c 124.78 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1J17 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 T CYS 22 1_555 A SG CYS 137 T CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 25 T CYS 42 1_555 A SG CYS 41 T CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 109 T CYS 128 1_555 A SG CYS 210 T CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 116 T CYS 136 1_555 A SG CYS 183 T CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf5 A SG CYS 148 T CYS 168 1_555 A SG CYS 162 T CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf6 A SG CYS 173 T CYS 191 1_555 A SG CYS 197 T CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc1 A OE1 GLU 52 T GLU 70 1_555 B CA CA . T CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc2 A O ASN 54 T ASN 72 1_555 B CA CA . T CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc3 A O VAL 57 T VAL 75 1_555 B CA CA . T CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc4 A OE1 GLU 59 T GLU 77 1_555 B CA CA . T CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? metalc ? metalc5 A OE2 GLU 62 T GLU 80 1_555 B CA CA . T CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc6 E O HOH . T HOH 261 1_555 B CA CA . T CA 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? # _chem_comp.formula 'C25 H27 Cl N4 O3 S' _chem_comp.formula_weight 499.025 _chem_comp.id ZEN _chem_comp.mon_nstd_flag . _chem_comp.name "[4-(6-CHLORO-NAPHTHALENE-2-SULFONYL)-PIPERAZIN-1-YL]- (3,4,5,6-TETRAHYDRO-2H-[1,4']BIPYRIDINYL-4-YL)- METHANONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 ZEN doub 380 n y N1 C6 ZEN sing 381 n y C2 C3 ZEN sing 382 n y C2 H2 ZEN sing 383 n n C3 C4 ZEN doub 384 n y C3 H3 ZEN sing 385 n n C5 C6 ZEN doub 386 n y C5 C4 ZEN sing 387 n y C5 H5 ZEN sing 388 n n C6 H6 ZEN sing 389 n n C4 N7 ZEN sing 390 n n N7 C8 ZEN sing 391 n n N7 C12 ZEN sing 392 n n C8 C9 ZEN sing 393 n n C8 H82 ZEN sing 394 n n C8 H81 ZEN sing 395 n n C9 C10 ZEN sing 396 n n C9 H92 ZEN sing 397 n n C9 H91 ZEN sing 398 n n C11 C12 ZEN sing 399 n n C11 C10 ZEN sing 400 n n C11 H112 ZEN sing 401 n n C11 H111 ZEN sing 402 n n C12 H122 ZEN sing 403 n n C12 H121 ZEN sing 404 n n C10 C13 ZEN sing 405 n n C10 H10 ZEN sing 406 n n C13 O23 ZEN doub 407 n n C13 N14 ZEN sing 408 n n N14 C15 ZEN sing 409 n n N14 C19 ZEN sing 410 n n C15 C16 ZEN sing 411 n n C15 H152 ZEN sing 412 n n C15 H151 ZEN sing 413 n n C16 N17 ZEN sing 414 n n C16 H162 ZEN sing 415 n n C16 H161 ZEN sing 416 n n C18 C19 ZEN sing 417 n n C18 N17 ZEN sing 418 n n C18 H182 ZEN sing 419 n n C18 H181 ZEN sing 420 n n C19 H192 ZEN sing 421 n n C19 H191 ZEN sing 422 n n N17 S20 ZEN sing 423 n n S20 O21 ZEN doub 424 n n S20 O22 ZEN doub 425 n n S20 C24 ZEN sing 426 n n C24 C25 ZEN doub 427 n y C24 C33 ZEN sing 428 n y C25 C26 ZEN sing 429 n y C25 H25 ZEN sing 430 n n C33 C34 ZEN doub 431 n y C33 H33 ZEN sing 432 n n C34 C27 ZEN sing 433 n y C34 H34 ZEN sing 434 n n C26 C27 ZEN doub 435 n y C26 C31 ZEN sing 436 n y C27 C28 ZEN sing 437 n y C28 C29 ZEN doub 438 n y C28 H28 ZEN sing 439 n n C30 C31 ZEN doub 440 n y C30 C29 ZEN sing 441 n y C30 H30 ZEN sing 442 n n C31 H31 ZEN sing 443 n n C29 CL32 ZEN sing 444 n n # _atom_sites.entry_id 1J17 _atom_sites.fract_transf_matrix[1][1] 0.008014 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008014 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008014 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA T 1 480 480 CA CAL . C 3 SO4 T 1 600 600 SO4 SO4 . D 4 ZEN T 1 1 1 ZEN ZEN . E 5 HOH T 1 249 249 HOH H2O . E 5 HOH T 2 250 250 HOH H2O . E 5 HOH T 3 251 251 HOH H2O . E 5 HOH T 4 252 252 HOH H2O . E 5 HOH T 5 253 253 HOH H2O . E 5 HOH T 6 255 255 HOH H2O . E 5 HOH T 7 256 256 HOH H2O . E 5 HOH T 8 257 257 HOH H2O . E 5 HOH T 9 259 259 HOH H2O . E 5 HOH T 10 260 260 HOH H2O . E 5 HOH T 11 261 261 HOH H2O . E 5 HOH T 12 262 262 HOH H2O . E 5 HOH T 13 264 264 HOH H2O . E 5 HOH T 14 266 266 HOH H2O . E 5 HOH T 15 267 267 HOH H2O . E 5 HOH T 16 269 269 HOH H2O . E 5 HOH T 17 272 272 HOH H2O . E 5 HOH T 18 273 273 HOH H2O . E 5 HOH T 19 275 275 HOH H2O . E 5 HOH T 20 276 276 HOH H2O . E 5 HOH T 21 280 280 HOH H2O . E 5 HOH T 22 281 281 HOH H2O . E 5 HOH T 23 282 282 HOH H2O . E 5 HOH T 24 283 283 HOH H2O . E 5 HOH T 25 284 284 HOH H2O . E 5 HOH T 26 286 286 HOH H2O . E 5 HOH T 27 287 287 HOH H2O . E 5 HOH T 28 288 288 HOH H2O . E 5 HOH T 29 292 292 HOH H2O . E 5 HOH T 30 294 294 HOH H2O . E 5 HOH T 31 298 298 HOH H2O . E 5 HOH T 32 303 303 HOH H2O . E 5 HOH T 33 305 305 HOH H2O . E 5 HOH T 34 306 306 HOH H2O . E 5 HOH T 35 307 307 HOH H2O . E 5 HOH T 36 309 309 HOH H2O . E 5 HOH T 37 311 311 HOH H2O . E 5 HOH T 38 313 313 HOH H2O . E 5 HOH T 39 314 314 HOH H2O . E 5 HOH T 40 318 318 HOH H2O . E 5 HOH T 41 319 319 HOH H2O . E 5 HOH T 42 320 320 HOH H2O . E 5 HOH T 43 324 324 HOH H2O . E 5 HOH T 44 327 327 HOH H2O . E 5 HOH T 45 329 329 HOH H2O . E 5 HOH T 46 332 332 HOH H2O . E 5 HOH T 47 335 335 HOH H2O . E 5 HOH T 48 341 341 HOH H2O . E 5 HOH T 49 342 342 HOH H2O . E 5 HOH T 50 343 343 HOH H2O . E 5 HOH T 51 347 347 HOH H2O . E 5 HOH T 52 350 350 HOH H2O . E 5 HOH T 53 358 358 HOH H2O . E 5 HOH T 54 370 370 HOH H2O . E 5 HOH T 55 371 371 HOH H2O . E 5 HOH T 56 377 377 HOH H2O . E 5 HOH T 57 385 385 HOH H2O . E 5 HOH T 58 416 416 HOH H2O . E 5 HOH T 59 502 502 HOH H2O . E 5 HOH T 60 562 562 HOH H2O . E 5 HOH T 61 705 705 HOH H2O . E 5 HOH T 62 723 723 HOH H2O . E 5 HOH T 63 724 724 HOH H2O . E 5 HOH T 64 725 725 HOH H2O . E 5 HOH T 65 726 726 HOH H2O . E 5 HOH T 66 727 727 HOH H2O . E 5 HOH T 67 728 728 HOH H2O . E 5 HOH T 68 729 729 HOH H2O . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ZEN . . . D 4 18.555 50.746 60.251 1 52.32 ? N1 ZEN 1 T 1 HETATM 2 C C2 ZEN . . . D 4 18.335 50.76 61.589 1 53.12 ? C2 ZEN 1 T 1 HETATM 3 C C3 ZEN . . . D 4 17.127 50.26 62.109 1 53.23 ? C3 ZEN 1 T 1 HETATM 4 C C5 ZEN . . . D 4 16.412 49.734 59.851 1 52.7 ? C5 ZEN 1 T 1 HETATM 5 C C6 ZEN . . . D 4 17.634 50.25 59.387 1 53.79 ? C6 ZEN 1 T 1 HETATM 6 C C4 ZEN . . . D 4 16.153 49.743 61.226 1 53.85 ? C4 ZEN 1 T 1 HETATM 7 N N7 ZEN . . . D 4 14.929 49.22 61.744 1 55.9 ? N7 ZEN 1 T 1 HETATM 8 C C8 ZEN . . . D 4 14.511 49.515 63.138 1 54.69 ? C8 ZEN 1 T 1 HETATM 9 C C9 ZEN . . . D 4 13.189 50.312 63.129 1 53.27 ? C9 ZEN 1 T 1 HETATM 10 C C11 ZEN . . . D 4 12.541 49.256 60.934 1 53.2 ? C11 ZEN 1 T 1 HETATM 11 C C12 ZEN . . . D 4 13.924 48.539 60.874 1 54 ? C12 ZEN 1 T 1 HETATM 12 C C10 ZEN . . . D 4 12.079 49.492 62.413 1 51.52 ? C10 ZEN 1 T 1 HETATM 13 C C13 ZEN . . . D 4 10.744 50.225 62.443 1 49.78 ? C13 ZEN 1 T 1 HETATM 14 O O23 ZEN . . . D 4 10.835 51.457 62.538 1 51.46 ? O23 ZEN 1 T 1 HETATM 15 N N14 ZEN . . . D 4 9.551 49.629 62.376 1 44.93 ? N14 ZEN 1 T 1 HETATM 16 C C15 ZEN . . . D 4 9.36 48.155 62.266 1 39.27 ? C15 ZEN 1 T 1 HETATM 17 C C16 ZEN . . . D 4 8.47 47.86 61.029 1 32.53 ? C16 ZEN 1 T 1 HETATM 18 C C18 ZEN . . . D 4 7.506 50.133 61.117 1 34.42 ? C18 ZEN 1 T 1 HETATM 19 C C19 ZEN . . . D 4 8.311 50.448 62.403 1 39.81 ? C19 ZEN 1 T 1 HETATM 20 N N17 ZEN . . . D 4 7.231 48.676 61.088 1 28.96 ? N17 ZEN 1 T 1 HETATM 21 S S20 ZEN . . . D 4 6.16 48.255 59.922 1 23.14 ? S20 ZEN 1 T 1 HETATM 22 O O21 ZEN . . . D 4 4.989 49.108 60.041 1 18.89 ? O21 ZEN 1 T 1 HETATM 23 O O22 ZEN . . . D 4 5.92 46.853 60.099 1 25.34 ? O22 ZEN 1 T 1 HETATM 24 C C24 ZEN . . . D 4 6.868 48.489 58.297 1 22.56 ? C24 ZEN 1 T 1 HETATM 25 C C25 ZEN . . . D 4 6.84 49.759 57.662 1 20.24 ? C25 ZEN 1 T 1 HETATM 26 C C33 ZEN . . . D 4 7.491 47.407 57.647 1 21.14 ? C33 ZEN 1 T 1 HETATM 27 C C34 ZEN . . . D 4 8.058 47.574 56.377 1 19.67 ? C34 ZEN 1 T 1 HETATM 28 C C26 ZEN . . . D 4 7.414 49.934 56.382 1 18.87 ? C26 ZEN 1 T 1 HETATM 29 C C27 ZEN . . . D 4 8.016 48.826 55.742 1 17.92 ? C27 ZEN 1 T 1 HETATM 30 C C28 ZEN . . . D 4 8.58 48.981 54.493 1 19.32 ? C28 ZEN 1 T 1 HETATM 31 C C30 ZEN . . . D 4 7.95 51.336 54.456 1 17.39 ? C30 ZEN 1 T 1 HETATM 32 C C31 ZEN . . . D 4 7.38 51.191 55.729 1 17.28 ? C31 ZEN 1 T 1 HETATM 33 C C29 ZEN . . . D 4 8.557 50.217 53.842 1 21.53 ? C29 ZEN 1 T 1 HETATM 34 CL CL32 ZEN . . . D 4 9.332 50.347 52.277 1 18.88 ? CL32 ZEN 1 T 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 34 #