data_1J1F # _model_server_result.job_id yt12xC2lAlVI2KSdThBlIA _model_server_result.datetime_utc '2024-10-20 03:41:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1j1f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":295}' # _entry.id 1J1F # _exptl.entry_id 1J1F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1J1F _cell.length_a 38.375 _cell.length_b 65.777 _cell.length_c 75.882 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1J1F _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 16 A CYS 15 1_555 A SG CYS 24 A CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 49 A CYS 48 1_555 A SG CYS 92 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 152 A CYS 151 1_555 A SG CYS 185 A CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 169 A CYS 168 1_555 A SG CYS 180 A CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 5GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 5GP doub 1 n n P O2P 5GP sing 2 n n P O3P 5GP sing 3 n n P O5' 5GP sing 4 n n O2P HOP2 5GP sing 5 n n O3P HOP3 5GP sing 6 n n O5' C5' 5GP sing 7 n n C5' C4' 5GP sing 8 n n C5' "H5'1" 5GP sing 9 n n C5' "H5'2" 5GP sing 10 n n C4' O4' 5GP sing 11 n n C4' C3' 5GP sing 12 n n C4' H4' 5GP sing 13 n n O4' C1' 5GP sing 14 n n C3' O3' 5GP sing 15 n n C3' C2' 5GP sing 16 n n C3' H3' 5GP sing 17 n n O3' HO3' 5GP sing 18 n n C2' O2' 5GP sing 19 n n C2' C1' 5GP sing 20 n n C2' H2' 5GP sing 21 n n O2' HO2' 5GP sing 22 n n C1' N9 5GP sing 23 n n C1' H1' 5GP sing 24 n n N9 C8 5GP sing 25 n y N9 C4 5GP sing 26 n y C8 N7 5GP doub 27 n y C8 H8 5GP sing 28 n n N7 C5 5GP sing 29 n y C5 C6 5GP sing 30 n n C5 C4 5GP doub 31 n y C6 O6 5GP doub 32 n n C6 N1 5GP sing 33 n n N1 C2 5GP sing 34 n n N1 HN1 5GP sing 35 n n C2 N2 5GP sing 36 n n C2 N3 5GP doub 37 n n N2 HN21 5GP sing 38 n n N2 HN22 5GP sing 39 n n N3 C4 5GP sing 40 n n # _atom_sites.entry_id 1J1F _atom_sites.fract_transf_matrix[1][1] 0.026059 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015203 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013178 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5GP A 1 295 295 5GP 5GP . C 3 HOH A 1 296 1 HOH TIP . C 3 HOH A 2 297 2 HOH TIP . C 3 HOH A 3 298 3 HOH TIP . C 3 HOH A 4 299 4 HOH TIP . C 3 HOH A 5 300 5 HOH TIP . C 3 HOH A 6 301 6 HOH TIP . C 3 HOH A 7 302 7 HOH TIP . C 3 HOH A 8 303 9 HOH TIP . C 3 HOH A 9 304 10 HOH TIP . C 3 HOH A 10 305 11 HOH TIP . C 3 HOH A 11 306 12 HOH TIP . C 3 HOH A 12 307 13 HOH TIP . C 3 HOH A 13 308 14 HOH TIP . C 3 HOH A 14 309 15 HOH TIP . C 3 HOH A 15 310 16 HOH TIP . C 3 HOH A 16 311 18 HOH TIP . C 3 HOH A 17 312 19 HOH TIP . C 3 HOH A 18 313 21 HOH TIP . C 3 HOH A 19 314 22 HOH TIP . C 3 HOH A 20 315 23 HOH TIP . C 3 HOH A 21 316 24 HOH TIP . C 3 HOH A 22 317 26 HOH TIP . C 3 HOH A 23 318 27 HOH TIP . C 3 HOH A 24 319 28 HOH TIP . C 3 HOH A 25 320 29 HOH TIP . C 3 HOH A 26 321 30 HOH TIP . C 3 HOH A 27 322 31 HOH TIP . C 3 HOH A 28 323 32 HOH TIP . C 3 HOH A 29 324 33 HOH TIP . C 3 HOH A 30 325 34 HOH TIP . C 3 HOH A 31 326 35 HOH TIP . C 3 HOH A 32 327 36 HOH TIP . C 3 HOH A 33 328 37 HOH TIP . C 3 HOH A 34 329 38 HOH TIP . C 3 HOH A 35 330 39 HOH TIP . C 3 HOH A 36 331 40 HOH TIP . C 3 HOH A 37 332 41 HOH TIP . C 3 HOH A 38 333 42 HOH TIP . C 3 HOH A 39 334 43 HOH TIP . C 3 HOH A 40 335 45 HOH TIP . C 3 HOH A 41 336 46 HOH TIP . C 3 HOH A 42 337 47 HOH TIP . C 3 HOH A 43 338 48 HOH TIP . C 3 HOH A 44 339 49 HOH TIP . C 3 HOH A 45 340 50 HOH TIP . C 3 HOH A 46 341 51 HOH TIP . C 3 HOH A 47 342 52 HOH TIP . C 3 HOH A 48 343 53 HOH TIP . C 3 HOH A 49 344 54 HOH TIP . C 3 HOH A 50 345 55 HOH TIP . C 3 HOH A 51 346 56 HOH TIP . C 3 HOH A 52 347 57 HOH TIP . C 3 HOH A 53 348 58 HOH TIP . C 3 HOH A 54 349 59 HOH TIP . C 3 HOH A 55 350 60 HOH TIP . C 3 HOH A 56 351 61 HOH TIP . C 3 HOH A 57 352 62 HOH TIP . C 3 HOH A 58 353 63 HOH TIP . C 3 HOH A 59 354 64 HOH TIP . C 3 HOH A 60 355 65 HOH TIP . C 3 HOH A 61 356 66 HOH TIP . C 3 HOH A 62 357 67 HOH TIP . C 3 HOH A 63 358 68 HOH TIP . C 3 HOH A 64 359 69 HOH TIP . C 3 HOH A 65 360 70 HOH TIP . C 3 HOH A 66 361 72 HOH TIP . C 3 HOH A 67 362 73 HOH TIP . C 3 HOH A 68 363 74 HOH TIP . C 3 HOH A 69 364 75 HOH TIP . C 3 HOH A 70 365 76 HOH TIP . C 3 HOH A 71 366 77 HOH TIP . C 3 HOH A 72 367 78 HOH TIP . C 3 HOH A 73 368 81 HOH TIP . C 3 HOH A 74 369 82 HOH TIP . C 3 HOH A 75 370 83 HOH TIP . C 3 HOH A 76 371 84 HOH TIP . C 3 HOH A 77 372 85 HOH TIP . C 3 HOH A 78 373 86 HOH TIP . C 3 HOH A 79 374 87 HOH TIP . C 3 HOH A 80 375 88 HOH TIP . C 3 HOH A 81 376 89 HOH TIP . C 3 HOH A 82 377 90 HOH TIP . C 3 HOH A 83 378 91 HOH TIP . C 3 HOH A 84 379 92 HOH TIP . C 3 HOH A 85 380 93 HOH TIP . C 3 HOH A 86 381 94 HOH TIP . C 3 HOH A 87 382 96 HOH TIP . C 3 HOH A 88 383 98 HOH TIP . C 3 HOH A 89 384 100 HOH TIP . C 3 HOH A 90 385 101 HOH TIP . C 3 HOH A 91 386 102 HOH TIP . C 3 HOH A 92 387 103 HOH TIP . C 3 HOH A 93 388 104 HOH TIP . C 3 HOH A 94 389 105 HOH TIP . C 3 HOH A 95 390 107 HOH TIP . C 3 HOH A 96 391 108 HOH TIP . C 3 HOH A 97 392 110 HOH TIP . C 3 HOH A 98 393 111 HOH TIP . C 3 HOH A 99 394 112 HOH TIP . C 3 HOH A 100 395 113 HOH TIP . C 3 HOH A 101 396 114 HOH TIP . C 3 HOH A 102 397 119 HOH TIP . C 3 HOH A 103 398 120 HOH TIP . C 3 HOH A 104 399 121 HOH TIP . C 3 HOH A 105 400 122 HOH TIP . C 3 HOH A 106 401 123 HOH TIP . C 3 HOH A 107 402 124 HOH TIP . C 3 HOH A 108 403 125 HOH TIP . C 3 HOH A 109 404 126 HOH TIP . C 3 HOH A 110 405 127 HOH TIP . C 3 HOH A 111 406 128 HOH TIP . C 3 HOH A 112 407 129 HOH TIP . C 3 HOH A 113 408 130 HOH TIP . C 3 HOH A 114 409 131 HOH TIP . C 3 HOH A 115 410 132 HOH TIP . C 3 HOH A 116 411 133 HOH TIP . C 3 HOH A 117 412 134 HOH TIP . C 3 HOH A 118 413 135 HOH TIP . C 3 HOH A 119 414 136 HOH TIP . C 3 HOH A 120 415 137 HOH TIP . C 3 HOH A 121 416 138 HOH TIP . C 3 HOH A 122 417 139 HOH TIP . C 3 HOH A 123 418 140 HOH TIP . C 3 HOH A 124 419 141 HOH TIP . C 3 HOH A 125 420 142 HOH TIP . C 3 HOH A 126 421 143 HOH TIP . C 3 HOH A 127 422 144 HOH TIP . C 3 HOH A 128 423 145 HOH TIP . C 3 HOH A 129 424 146 HOH TIP . C 3 HOH A 130 425 147 HOH TIP . C 3 HOH A 131 426 148 HOH TIP . C 3 HOH A 132 427 149 HOH TIP . C 3 HOH A 133 428 150 HOH TIP . C 3 HOH A 134 429 151 HOH TIP . C 3 HOH A 135 430 152 HOH TIP . C 3 HOH A 136 431 153 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 5GP . . . B 2 23.565 25.02 69.374 1 24.59 ? P 5GP 295 A 1 HETATM 2 O O1P 5GP . . . B 2 23.954 26.364 68.935 1 27.68 ? O1P 5GP 295 A 1 HETATM 3 O O2P 5GP . . . B 2 22.217 24.987 70.065 1 28.19 ? O2P 5GP 295 A 1 HETATM 4 O O3P 5GP . . . B 2 23.59 24.015 68.183 1 29.79 ? O3P 5GP 295 A 1 HETATM 5 O O5' 5GP . . . B 2 24.629 24.406 70.41 1 29.11 ? O5' 5GP 295 A 1 HETATM 6 C C5' 5GP . . . B 2 25.059 25.162 71.551 1 27.59 ? C5' 5GP 295 A 1 HETATM 7 C C4' 5GP . . . B 2 26.072 24.429 72.412 1 27.77 ? C4' 5GP 295 A 1 HETATM 8 O O4' 5GP . . . B 2 27.285 25.268 72.296 1 27 ? O4' 5GP 295 A 1 HETATM 9 C C3' 5GP . . . B 2 25.803 24.341 73.911 1 28.25 ? C3' 5GP 295 A 1 HETATM 10 O O3' 5GP . . . B 2 25.183 23.128 74.308 1 30.64 ? O3' 5GP 295 A 1 HETATM 11 C C2' 5GP . . . B 2 27.163 24.494 74.577 1 26.69 ? C2' 5GP 295 A 1 HETATM 12 O O2' 5GP . . . B 2 27.781 23.219 74.843 1 29.78 ? O2' 5GP 295 A 1 HETATM 13 C C1' 5GP . . . B 2 27.956 25.33 73.578 1 24.66 ? C1' 5GP 295 A 1 HETATM 14 N N9 5GP . . . B 2 28.211 26.76 73.907 1 20.65 ? N9 5GP 295 A 1 HETATM 15 C C8 5GP . . . B 2 29.398 27.407 74.12 1 18.25 ? C8 5GP 295 A 1 HETATM 16 N N7 5GP . . . B 2 29.304 28.69 74.375 1 16.37 ? N7 5GP 295 A 1 HETATM 17 C C5 5GP . . . B 2 27.913 28.905 74.32 1 15.58 ? C5 5GP 295 A 1 HETATM 18 C C6 5GP . . . B 2 27.195 30.129 74.524 1 13.64 ? C6 5GP 295 A 1 HETATM 19 O O6 5GP . . . B 2 27.655 31.233 74.775 1 13.18 ? O6 5GP 295 A 1 HETATM 20 N N1 5GP . . . B 2 25.787 29.943 74.387 1 14.37 ? N1 5GP 295 A 1 HETATM 21 C C2 5GP . . . B 2 25.19 28.717 74.1 1 15.17 ? C2 5GP 295 A 1 HETATM 22 N N2 5GP . . . B 2 23.84 28.764 74.02 1 16.94 ? N2 5GP 295 A 1 HETATM 23 N N3 5GP . . . B 2 25.864 27.564 73.909 1 17.08 ? N3 5GP 295 A 1 HETATM 24 C C4 5GP . . . B 2 27.23 27.737 74.04 1 17.85 ? C4 5GP 295 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #