data_1J1G # _model_server_result.job_id XvN3LjfjY9-eLGU1MgQQow _model_server_result.datetime_utc '2025-02-27 08:41:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1j1g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":296}' # _entry.id 1J1G # _exptl.entry_id 1J1G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1J1G _cell.length_a 38.542 _cell.length_b 66.209 _cell.length_c 75.537 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1J1G _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 15 A CYS 15 1_555 A SG CYS 23 A CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 48 A CYS 48 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 151 A CYS 151 1_555 A SG CYS 184 A CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 A SG CYS 168 A CYS 168 1_555 A SG CYS 179 A CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 5GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 5GP doub 1 n n P O2P 5GP sing 2 n n P O3P 5GP sing 3 n n P O5' 5GP sing 4 n n O2P HOP2 5GP sing 5 n n O3P HOP3 5GP sing 6 n n O5' C5' 5GP sing 7 n n C5' C4' 5GP sing 8 n n C5' "H5'1" 5GP sing 9 n n C5' "H5'2" 5GP sing 10 n n C4' O4' 5GP sing 11 n n C4' C3' 5GP sing 12 n n C4' H4' 5GP sing 13 n n O4' C1' 5GP sing 14 n n C3' O3' 5GP sing 15 n n C3' C2' 5GP sing 16 n n C3' H3' 5GP sing 17 n n O3' HO3' 5GP sing 18 n n C2' O2' 5GP sing 19 n n C2' C1' 5GP sing 20 n n C2' H2' 5GP sing 21 n n O2' HO2' 5GP sing 22 n n C1' N9 5GP sing 23 n n C1' H1' 5GP sing 24 n n N9 C8 5GP sing 25 n y N9 C4 5GP sing 26 n y C8 N7 5GP doub 27 n y C8 H8 5GP sing 28 n n N7 C5 5GP sing 29 n y C5 C6 5GP sing 30 n n C5 C4 5GP doub 31 n y C6 O6 5GP doub 32 n n C6 N1 5GP sing 33 n n N1 C2 5GP sing 34 n n N1 HN1 5GP sing 35 n n C2 N2 5GP sing 36 n n C2 N3 5GP doub 37 n n N2 HN21 5GP sing 38 n n N2 HN22 5GP sing 39 n n N3 C4 5GP sing 40 n n # _atom_sites.entry_id 1J1G _atom_sites.fract_transf_matrix[1][1] 0.025946 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015104 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013239 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5GP A 1 295 295 5GP 5GP . C 2 5GP A 1 296 296 5GP 5GP . D 3 HOH A 1 297 1 HOH TIP . D 3 HOH A 2 298 2 HOH TIP . D 3 HOH A 3 299 3 HOH TIP . D 3 HOH A 4 300 4 HOH TIP . D 3 HOH A 5 301 5 HOH TIP . D 3 HOH A 6 302 6 HOH TIP . D 3 HOH A 7 303 7 HOH TIP . D 3 HOH A 8 304 8 HOH TIP . D 3 HOH A 9 305 9 HOH TIP . D 3 HOH A 10 306 10 HOH TIP . D 3 HOH A 11 307 11 HOH TIP . D 3 HOH A 12 308 12 HOH TIP . D 3 HOH A 13 309 13 HOH TIP . D 3 HOH A 14 310 14 HOH TIP . D 3 HOH A 15 311 15 HOH TIP . D 3 HOH A 16 312 16 HOH TIP . D 3 HOH A 17 313 17 HOH TIP . D 3 HOH A 18 314 18 HOH TIP . D 3 HOH A 19 315 19 HOH TIP . D 3 HOH A 20 316 20 HOH TIP . D 3 HOH A 21 317 21 HOH TIP . D 3 HOH A 22 318 22 HOH TIP . D 3 HOH A 23 319 23 HOH TIP . D 3 HOH A 24 320 24 HOH TIP . D 3 HOH A 25 321 25 HOH TIP . D 3 HOH A 26 322 26 HOH TIP . D 3 HOH A 27 323 27 HOH TIP . D 3 HOH A 28 324 28 HOH TIP . D 3 HOH A 29 325 29 HOH TIP . D 3 HOH A 30 326 30 HOH TIP . D 3 HOH A 31 327 31 HOH TIP . D 3 HOH A 32 328 32 HOH TIP . D 3 HOH A 33 329 33 HOH TIP . D 3 HOH A 34 330 34 HOH TIP . D 3 HOH A 35 331 35 HOH TIP . D 3 HOH A 36 332 36 HOH TIP . D 3 HOH A 37 333 37 HOH TIP . D 3 HOH A 38 334 38 HOH TIP . D 3 HOH A 39 335 39 HOH TIP . D 3 HOH A 40 336 40 HOH TIP . D 3 HOH A 41 337 41 HOH TIP . D 3 HOH A 42 338 42 HOH TIP . D 3 HOH A 43 339 43 HOH TIP . D 3 HOH A 44 340 44 HOH TIP . D 3 HOH A 45 341 45 HOH TIP . D 3 HOH A 46 342 46 HOH TIP . D 3 HOH A 47 343 47 HOH TIP . D 3 HOH A 48 344 48 HOH TIP . D 3 HOH A 49 345 49 HOH TIP . D 3 HOH A 50 346 50 HOH TIP . D 3 HOH A 51 347 51 HOH TIP . D 3 HOH A 52 348 52 HOH TIP . D 3 HOH A 53 349 54 HOH TIP . D 3 HOH A 54 350 55 HOH TIP . D 3 HOH A 55 351 56 HOH TIP . D 3 HOH A 56 352 57 HOH TIP . D 3 HOH A 57 353 58 HOH TIP . D 3 HOH A 58 354 59 HOH TIP . D 3 HOH A 59 355 60 HOH TIP . D 3 HOH A 60 356 61 HOH TIP . D 3 HOH A 61 357 62 HOH TIP . D 3 HOH A 62 358 63 HOH TIP . D 3 HOH A 63 359 64 HOH TIP . D 3 HOH A 64 360 65 HOH TIP . D 3 HOH A 65 361 66 HOH TIP . D 3 HOH A 66 362 67 HOH TIP . D 3 HOH A 67 363 68 HOH TIP . D 3 HOH A 68 364 70 HOH TIP . D 3 HOH A 69 365 71 HOH TIP . D 3 HOH A 70 366 72 HOH TIP . D 3 HOH A 71 367 73 HOH TIP . D 3 HOH A 72 368 74 HOH TIP . D 3 HOH A 73 369 75 HOH TIP . D 3 HOH A 74 370 76 HOH TIP . D 3 HOH A 75 371 77 HOH TIP . D 3 HOH A 76 372 78 HOH TIP . D 3 HOH A 77 373 79 HOH TIP . D 3 HOH A 78 374 80 HOH TIP . D 3 HOH A 79 375 81 HOH TIP . D 3 HOH A 80 376 82 HOH TIP . D 3 HOH A 81 377 83 HOH TIP . D 3 HOH A 82 378 84 HOH TIP . D 3 HOH A 83 379 85 HOH TIP . D 3 HOH A 84 380 86 HOH TIP . D 3 HOH A 85 381 87 HOH TIP . D 3 HOH A 86 382 88 HOH TIP . D 3 HOH A 87 383 89 HOH TIP . D 3 HOH A 88 384 90 HOH TIP . D 3 HOH A 89 385 91 HOH TIP . D 3 HOH A 90 386 92 HOH TIP . D 3 HOH A 91 387 93 HOH TIP . D 3 HOH A 92 388 94 HOH TIP . D 3 HOH A 93 389 95 HOH TIP . D 3 HOH A 94 390 96 HOH TIP . D 3 HOH A 95 391 97 HOH TIP . D 3 HOH A 96 392 99 HOH TIP . D 3 HOH A 97 393 100 HOH TIP . D 3 HOH A 98 394 101 HOH TIP . D 3 HOH A 99 395 102 HOH TIP . D 3 HOH A 100 396 103 HOH TIP . D 3 HOH A 101 397 104 HOH TIP . D 3 HOH A 102 398 105 HOH TIP . D 3 HOH A 103 399 106 HOH TIP . D 3 HOH A 104 400 107 HOH TIP . D 3 HOH A 105 401 108 HOH TIP . D 3 HOH A 106 402 109 HOH TIP . D 3 HOH A 107 403 110 HOH TIP . D 3 HOH A 108 404 112 HOH TIP . D 3 HOH A 109 405 114 HOH TIP . D 3 HOH A 110 406 115 HOH TIP . D 3 HOH A 111 407 116 HOH TIP . D 3 HOH A 112 408 117 HOH TIP . D 3 HOH A 113 409 118 HOH TIP . D 3 HOH A 114 410 119 HOH TIP . D 3 HOH A 115 411 121 HOH TIP . D 3 HOH A 116 412 122 HOH TIP . D 3 HOH A 117 413 123 HOH TIP . D 3 HOH A 118 414 124 HOH TIP . D 3 HOH A 119 415 125 HOH TIP . D 3 HOH A 120 416 126 HOH TIP . D 3 HOH A 121 417 127 HOH TIP . D 3 HOH A 122 418 128 HOH TIP . D 3 HOH A 123 419 129 HOH TIP . D 3 HOH A 124 420 130 HOH TIP . D 3 HOH A 125 421 131 HOH TIP . D 3 HOH A 126 422 132 HOH TIP . D 3 HOH A 127 423 133 HOH TIP . D 3 HOH A 128 424 134 HOH TIP . D 3 HOH A 129 425 135 HOH TIP . D 3 HOH A 130 426 136 HOH TIP . D 3 HOH A 131 427 137 HOH TIP . D 3 HOH A 132 428 138 HOH TIP . D 3 HOH A 133 429 139 HOH TIP . D 3 HOH A 134 430 140 HOH TIP . D 3 HOH A 135 431 141 HOH TIP . D 3 HOH A 136 432 142 HOH TIP . D 3 HOH A 137 433 143 HOH TIP . D 3 HOH A 138 434 144 HOH TIP . D 3 HOH A 139 435 145 HOH TIP . D 3 HOH A 140 436 146 HOH TIP . D 3 HOH A 141 437 147 HOH TIP . D 3 HOH A 142 438 148 HOH TIP . D 3 HOH A 143 439 149 HOH TIP . D 3 HOH A 144 440 150 HOH TIP . D 3 HOH A 145 441 151 HOH TIP . D 3 HOH A 146 442 153 HOH TIP . D 3 HOH A 147 443 154 HOH TIP . D 3 HOH A 148 444 155 HOH TIP . D 3 HOH A 149 445 156 HOH TIP . D 3 HOH A 150 446 158 HOH TIP . D 3 HOH A 151 447 159 HOH TIP . D 3 HOH A 152 448 160 HOH TIP . D 3 HOH A 153 449 161 HOH TIP . D 3 HOH A 154 450 163 HOH TIP . D 3 HOH A 155 451 164 HOH TIP . D 3 HOH A 156 452 165 HOH TIP . D 3 HOH A 157 453 166 HOH TIP . D 3 HOH A 158 454 167 HOH TIP . D 3 HOH A 159 455 168 HOH TIP . D 3 HOH A 160 456 169 HOH TIP . D 3 HOH A 161 457 170 HOH TIP . D 3 HOH A 162 458 171 HOH TIP . D 3 HOH A 163 459 173 HOH TIP . D 3 HOH A 164 460 174 HOH TIP . D 3 HOH A 165 461 175 HOH TIP . D 3 HOH A 166 462 178 HOH TIP . D 3 HOH A 167 463 179 HOH TIP . D 3 HOH A 168 464 180 HOH TIP . D 3 HOH A 169 465 181 HOH TIP . D 3 HOH A 170 466 183 HOH TIP . D 3 HOH A 171 467 184 HOH TIP . D 3 HOH A 172 468 185 HOH TIP . D 3 HOH A 173 469 186 HOH TIP . D 3 HOH A 174 470 187 HOH TIP . D 3 HOH A 175 471 188 HOH TIP . D 3 HOH A 176 472 189 HOH TIP . D 3 HOH A 177 473 190 HOH TIP . D 3 HOH A 178 474 191 HOH TIP . D 3 HOH A 179 475 192 HOH TIP . D 3 HOH A 180 476 193 HOH TIP . D 3 HOH A 181 477 194 HOH TIP . D 3 HOH A 182 478 195 HOH TIP . D 3 HOH A 183 479 196 HOH TIP . D 3 HOH A 184 480 197 HOH TIP . D 3 HOH A 185 481 198 HOH TIP . D 3 HOH A 186 482 199 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 5GP . . . C 2 38.843 81.1 27.816 1 53.14 ? P 5GP 296 A 1 HETATM 2 O O1P 5GP . . . C 2 38.434 82.195 26.918 1 53.09 ? O1P 5GP 296 A 1 HETATM 3 O O2P 5GP . . . C 2 38.682 79.727 27.188 1 52.61 ? O2P 5GP 296 A 1 HETATM 4 O O3P 5GP . . . C 2 40.312 81.297 28.324 1 52.55 ? O3P 5GP 296 A 1 HETATM 5 O O5' 5GP . . . C 2 37.966 81.083 29.177 1 50.69 ? O5' 5GP 296 A 1 HETATM 6 C C5' 5GP . . . C 2 37.807 82.277 29.969 1 47.83 ? C5' 5GP 296 A 1 HETATM 7 C C4' 5GP . . . C 2 36.95 82.091 31.226 1 45.13 ? C4' 5GP 296 A 1 HETATM 8 O O4' 5GP . . . C 2 35.584 81.762 30.755 1 43.49 ? O4' 5GP 296 A 1 HETATM 9 C C3' 5GP . . . C 2 37.296 80.971 32.213 1 44.01 ? C3' 5GP 296 A 1 HETATM 10 O O3' 5GP . . . C 2 36.999 81.304 33.56 1 44.13 ? O3' 5GP 296 A 1 HETATM 11 C C2' 5GP . . . C 2 36.482 79.757 31.767 1 42.9 ? C2' 5GP 296 A 1 HETATM 12 O O2' 5GP . . . C 2 36.114 78.902 32.872 1 40.82 ? O2' 5GP 296 A 1 HETATM 13 C C1' 5GP . . . C 2 35.277 80.381 31.077 1 42.15 ? C1' 5GP 296 A 1 HETATM 14 N N9 5GP . . . C 2 34.681 79.711 29.893 1 40.6 ? N9 5GP 296 A 1 HETATM 15 C C8 5GP . . . C 2 35.293 79.089 28.829 1 39.38 ? C8 5GP 296 A 1 HETATM 16 N N7 5GP . . . C 2 34.507 78.787 27.825 1 38.74 ? N7 5GP 296 A 1 HETATM 17 C C5 5GP . . . C 2 33.253 79.256 28.276 1 38.19 ? C5 5GP 296 A 1 HETATM 18 C C6 5GP . . . C 2 31.99 79.205 27.598 1 37.42 ? C6 5GP 296 A 1 HETATM 19 O O6 5GP . . . C 2 31.749 78.741 26.49 1 35.81 ? O6 5GP 296 A 1 HETATM 20 N N1 5GP . . . C 2 30.945 79.787 28.384 1 36.48 ? N1 5GP 296 A 1 HETATM 21 C C2 5GP . . . C 2 31.137 80.336 29.652 1 37.56 ? C2 5GP 296 A 1 HETATM 22 N N2 5GP . . . C 2 30.009 80.831 30.211 1 36.51 ? N2 5GP 296 A 1 HETATM 23 N N3 5GP . . . C 2 32.328 80.387 30.297 1 38.3 ? N3 5GP 296 A 1 HETATM 24 C C4 5GP . . . C 2 33.345 79.823 29.538 1 39.29 ? C4 5GP 296 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #