data_1J2J # _model_server_result.job_id ZchUmJjDJqcUFxi-GZl9cg _model_server_result.datetime_utc '2024-11-22 21:21:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1j2j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2}' # _entry.id 1J2J # _exptl.entry_id 1J2J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1J2J _cell.length_a 49.41 _cell.length_b 61.894 _cell.length_c 76.874 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1J2J _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 16 A THR 31 1_555 C MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc2 A OG1 THR 33 A THR 48 1_555 C MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc3 E O2B GTP . A GTP 1001 1_555 C MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc4 E O2G GTP . A GTP 1001 1_555 C MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc5 C MG MG . A MG 1002 1_555 G O HOH . A HOH 1021 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc6 C MG MG . A MG 1002 1_555 G O HOH . A HOH 1022 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1J2J _atom_sites.fract_transf_matrix[1][1] 0.020239 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016157 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013008 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 1002 2 MG MG . D 4 IOD A 1 1 1 IOD IOD . E 5 GTP A 1 1001 1 GTP GTP . F 4 IOD B 1 2 2 IOD IOD . G 6 HOH A 1 1003 3 HOH HOH . G 6 HOH A 2 1004 4 HOH HOH . G 6 HOH A 3 1005 5 HOH HOH . G 6 HOH A 4 1006 6 HOH HOH . G 6 HOH A 5 1007 7 HOH HOH . G 6 HOH A 6 1008 8 HOH HOH . G 6 HOH A 7 1009 9 HOH HOH . G 6 HOH A 8 1010 10 HOH HOH . G 6 HOH A 9 1011 11 HOH HOH . G 6 HOH A 10 1012 12 HOH HOH . G 6 HOH A 11 1013 13 HOH HOH . G 6 HOH A 12 1014 14 HOH HOH . G 6 HOH A 13 1015 15 HOH HOH . G 6 HOH A 14 1016 16 HOH HOH . G 6 HOH A 15 1017 17 HOH HOH . G 6 HOH A 16 1018 18 HOH HOH . G 6 HOH A 17 1019 19 HOH HOH . G 6 HOH A 18 1020 20 HOH HOH . G 6 HOH A 19 1021 21 HOH HOH . G 6 HOH A 20 1022 22 HOH HOH . G 6 HOH A 21 1023 23 HOH HOH . G 6 HOH A 22 1024 24 HOH HOH . G 6 HOH A 23 1025 25 HOH HOH . G 6 HOH A 24 1026 26 HOH HOH . G 6 HOH A 25 1027 27 HOH HOH . G 6 HOH A 26 1028 28 HOH HOH . G 6 HOH A 27 1029 29 HOH HOH . G 6 HOH A 28 1030 30 HOH HOH . G 6 HOH A 29 1031 31 HOH HOH . G 6 HOH A 30 1032 32 HOH HOH . G 6 HOH A 31 1033 33 HOH HOH . G 6 HOH A 32 1034 34 HOH HOH . G 6 HOH A 33 1035 35 HOH HOH . G 6 HOH A 34 1036 36 HOH HOH . G 6 HOH A 35 1037 37 HOH HOH . G 6 HOH A 36 1038 38 HOH HOH . G 6 HOH A 37 1039 39 HOH HOH . G 6 HOH A 38 1040 40 HOH HOH . G 6 HOH A 39 1041 41 HOH HOH . G 6 HOH A 40 1042 42 HOH HOH . G 6 HOH A 41 1043 43 HOH HOH . G 6 HOH A 42 1044 44 HOH HOH . G 6 HOH A 43 1045 45 HOH HOH . G 6 HOH A 44 1046 46 HOH HOH . G 6 HOH A 45 1047 47 HOH HOH . G 6 HOH A 46 1048 48 HOH HOH . G 6 HOH A 47 1049 49 HOH HOH . G 6 HOH A 48 1050 50 HOH HOH . G 6 HOH A 49 1051 51 HOH HOH . G 6 HOH A 50 1052 52 HOH HOH . G 6 HOH A 51 1053 53 HOH HOH . G 6 HOH A 52 1054 54 HOH HOH . G 6 HOH A 53 1055 55 HOH HOH . G 6 HOH A 54 1056 57 HOH HOH . G 6 HOH A 55 1057 58 HOH HOH . G 6 HOH A 56 1058 59 HOH HOH . G 6 HOH A 57 1059 61 HOH HOH . G 6 HOH A 58 1060 62 HOH HOH . G 6 HOH A 59 1061 63 HOH HOH . G 6 HOH A 60 1062 64 HOH HOH . G 6 HOH A 61 1063 65 HOH HOH . G 6 HOH A 62 1064 66 HOH HOH . G 6 HOH A 63 1065 68 HOH HOH . G 6 HOH A 64 1066 69 HOH HOH . G 6 HOH A 65 1067 70 HOH HOH . G 6 HOH A 66 1068 71 HOH HOH . G 6 HOH A 67 1069 72 HOH HOH . G 6 HOH A 68 1070 73 HOH HOH . G 6 HOH A 69 1071 74 HOH HOH . G 6 HOH A 70 1072 75 HOH HOH . G 6 HOH A 71 1073 76 HOH HOH . G 6 HOH A 72 1074 77 HOH HOH . G 6 HOH A 73 1075 78 HOH HOH . G 6 HOH A 74 1076 79 HOH HOH . G 6 HOH A 75 1077 80 HOH HOH . G 6 HOH A 76 1078 81 HOH HOH . G 6 HOH A 77 1079 82 HOH HOH . G 6 HOH A 78 1080 83 HOH HOH . G 6 HOH A 79 1081 84 HOH HOH . G 6 HOH A 80 1082 85 HOH HOH . G 6 HOH A 81 1083 86 HOH HOH . G 6 HOH A 82 1084 87 HOH HOH . G 6 HOH A 83 1085 88 HOH HOH . G 6 HOH A 84 1086 89 HOH HOH . G 6 HOH A 85 1087 90 HOH HOH . G 6 HOH A 86 1088 91 HOH HOH . G 6 HOH A 87 1089 92 HOH HOH . G 6 HOH A 88 1090 93 HOH HOH . G 6 HOH A 89 1091 94 HOH HOH . G 6 HOH A 90 1092 95 HOH HOH . G 6 HOH A 91 1093 96 HOH HOH . G 6 HOH A 92 1094 97 HOH HOH . G 6 HOH A 93 1095 98 HOH HOH . G 6 HOH A 94 1096 99 HOH HOH . G 6 HOH A 95 1097 100 HOH HOH . G 6 HOH A 96 1098 101 HOH HOH . G 6 HOH A 97 1099 102 HOH HOH . G 6 HOH A 98 1100 103 HOH HOH . G 6 HOH A 99 1101 104 HOH HOH . G 6 HOH A 100 1102 105 HOH HOH . G 6 HOH A 101 1103 106 HOH HOH . G 6 HOH A 102 1104 107 HOH HOH . G 6 HOH A 103 1105 108 HOH HOH . G 6 HOH A 104 1106 109 HOH HOH . G 6 HOH A 105 1107 110 HOH HOH . G 6 HOH A 106 1108 111 HOH HOH . G 6 HOH A 107 1109 112 HOH HOH . G 6 HOH A 108 1110 113 HOH HOH . G 6 HOH A 109 1111 114 HOH HOH . G 6 HOH A 110 1112 115 HOH HOH . G 6 HOH A 111 1113 116 HOH HOH . G 6 HOH A 112 1114 117 HOH HOH . G 6 HOH A 113 1115 118 HOH HOH . G 6 HOH A 114 1116 119 HOH HOH . G 6 HOH A 115 1117 120 HOH HOH . G 6 HOH A 116 1118 121 HOH HOH . G 6 HOH A 117 1119 122 HOH HOH . G 6 HOH A 118 1120 123 HOH HOH . G 6 HOH A 119 1121 124 HOH HOH . G 6 HOH A 120 1122 125 HOH HOH . G 6 HOH A 121 1123 126 HOH HOH . G 6 HOH A 122 1124 127 HOH HOH . G 6 HOH A 123 1125 128 HOH HOH . G 6 HOH A 124 1126 129 HOH HOH . G 6 HOH A 125 1127 130 HOH HOH . G 6 HOH A 126 1128 141 HOH HOH . G 6 HOH A 127 1129 142 HOH HOH . G 6 HOH A 128 1130 144 HOH HOH . G 6 HOH A 129 1131 145 HOH HOH . G 6 HOH A 130 1132 146 HOH HOH . G 6 HOH A 131 1133 147 HOH HOH . G 6 HOH A 132 1134 148 HOH HOH . G 6 HOH A 133 1135 149 HOH HOH . G 6 HOH A 134 1136 150 HOH HOH . G 6 HOH A 135 1137 151 HOH HOH . G 6 HOH A 136 1138 152 HOH HOH . G 6 HOH A 137 1139 153 HOH HOH . G 6 HOH A 138 1140 154 HOH HOH . G 6 HOH A 139 1141 155 HOH HOH . G 6 HOH A 140 1142 156 HOH HOH . G 6 HOH A 141 1143 157 HOH HOH . G 6 HOH A 142 1144 158 HOH HOH . G 6 HOH A 143 1145 159 HOH HOH . G 6 HOH A 144 1146 160 HOH HOH . G 6 HOH A 145 1147 161 HOH HOH . G 6 HOH A 146 1148 163 HOH HOH . G 6 HOH A 147 1149 164 HOH HOH . G 6 HOH A 148 1150 165 HOH HOH . G 6 HOH A 149 1151 166 HOH HOH . G 6 HOH A 150 1152 167 HOH HOH . G 6 HOH A 151 1153 168 HOH HOH . G 6 HOH A 152 1154 169 HOH HOH . G 6 HOH A 153 1155 170 HOH HOH . G 6 HOH A 154 1156 171 HOH HOH . G 6 HOH A 155 1157 172 HOH HOH . G 6 HOH A 156 1158 173 HOH HOH . G 6 HOH A 157 1159 174 HOH HOH . G 6 HOH A 158 1160 175 HOH HOH . G 6 HOH A 159 1161 176 HOH HOH . G 6 HOH A 160 1162 177 HOH HOH . G 6 HOH A 161 1163 178 HOH HOH . G 6 HOH A 162 1164 179 HOH HOH . G 6 HOH A 163 1165 180 HOH HOH . G 6 HOH A 164 1166 181 HOH HOH . G 6 HOH A 165 1167 182 HOH HOH . G 6 HOH A 166 1168 183 HOH HOH . G 6 HOH A 167 1169 184 HOH HOH . G 6 HOH A 168 1170 185 HOH HOH . G 6 HOH A 169 1171 186 HOH HOH . G 6 HOH A 170 1172 187 HOH HOH . G 6 HOH A 171 1173 188 HOH HOH . G 6 HOH A 172 1174 189 HOH HOH . G 6 HOH A 173 1175 190 HOH HOH . G 6 HOH A 174 1176 191 HOH HOH . G 6 HOH A 175 1177 192 HOH HOH . G 6 HOH A 176 1178 193 HOH HOH . G 6 HOH A 177 1179 194 HOH HOH . G 6 HOH A 178 1180 195 HOH HOH . G 6 HOH A 179 1181 196 HOH HOH . G 6 HOH A 180 1182 197 HOH HOH . G 6 HOH A 181 1183 198 HOH HOH . G 6 HOH A 182 1184 199 HOH HOH . G 6 HOH A 183 1185 200 HOH HOH . G 6 HOH A 184 1186 202 HOH HOH . G 6 HOH A 185 1187 209 HOH HOH . G 6 HOH A 186 1188 210 HOH HOH . G 6 HOH A 187 1189 211 HOH HOH . G 6 HOH A 188 1190 212 HOH HOH . G 6 HOH A 189 1191 213 HOH HOH . G 6 HOH A 190 1192 214 HOH HOH . G 6 HOH A 191 1193 215 HOH HOH . G 6 HOH A 192 1194 216 HOH HOH . G 6 HOH A 193 1195 217 HOH HOH . G 6 HOH A 194 1196 223 HOH HOH . G 6 HOH A 195 1197 224 HOH HOH . G 6 HOH A 196 1198 225 HOH HOH . G 6 HOH A 197 1199 226 HOH HOH . G 6 HOH A 198 1200 227 HOH HOH . G 6 HOH A 199 1201 228 HOH HOH . G 6 HOH A 200 1202 229 HOH HOH . G 6 HOH A 201 1203 230 HOH HOH . G 6 HOH A 202 1204 231 HOH HOH . G 6 HOH A 203 1205 232 HOH HOH . G 6 HOH A 204 1206 233 HOH HOH . G 6 HOH A 205 1207 234 HOH HOH . G 6 HOH A 206 1208 235 HOH HOH . G 6 HOH A 207 1209 236 HOH HOH . G 6 HOH A 208 1210 237 HOH HOH . G 6 HOH A 209 1211 238 HOH HOH . G 6 HOH A 210 1212 239 HOH HOH . G 6 HOH A 211 1213 240 HOH HOH . G 6 HOH A 212 1214 241 HOH HOH . G 6 HOH A 213 1215 242 HOH HOH . G 6 HOH A 214 1216 243 HOH HOH . G 6 HOH A 215 1217 244 HOH HOH . G 6 HOH A 216 1218 245 HOH HOH . G 6 HOH A 217 1219 246 HOH HOH . G 6 HOH A 218 1220 247 HOH HOH . G 6 HOH A 219 1221 248 HOH HOH . G 6 HOH A 220 1222 249 HOH HOH . G 6 HOH A 221 1223 250 HOH HOH . G 6 HOH A 222 1224 253 HOH HOH . G 6 HOH A 223 1225 254 HOH HOH . G 6 HOH A 224 1226 255 HOH HOH . G 6 HOH A 225 1227 256 HOH HOH . G 6 HOH A 226 1228 257 HOH HOH . G 6 HOH A 227 1229 258 HOH HOH . G 6 HOH A 228 1230 260 HOH HOH . G 6 HOH A 229 1231 261 HOH HOH . G 6 HOH A 230 1232 262 HOH HOH . G 6 HOH A 231 1233 263 HOH HOH . G 6 HOH A 232 1234 264 HOH HOH . G 6 HOH A 233 1235 265 HOH HOH . G 6 HOH A 234 1236 270 HOH HOH . G 6 HOH A 235 1237 271 HOH HOH . G 6 HOH A 236 1238 274 HOH HOH . G 6 HOH A 237 1239 275 HOH HOH . G 6 HOH A 238 1240 276 HOH HOH . G 6 HOH A 239 1241 277 HOH HOH . G 6 HOH A 240 1242 278 HOH HOH . G 6 HOH A 241 1243 280 HOH HOH . H 6 HOH B 1 211 56 HOH HOH . H 6 HOH B 2 212 60 HOH HOH . H 6 HOH B 3 213 67 HOH HOH . H 6 HOH B 4 214 131 HOH HOH . H 6 HOH B 5 215 132 HOH HOH . H 6 HOH B 6 216 133 HOH HOH . H 6 HOH B 7 217 134 HOH HOH . H 6 HOH B 8 218 135 HOH HOH . H 6 HOH B 9 219 136 HOH HOH . H 6 HOH B 10 220 137 HOH HOH . H 6 HOH B 11 221 138 HOH HOH . H 6 HOH B 12 222 139 HOH HOH . H 6 HOH B 13 223 140 HOH HOH . H 6 HOH B 14 224 143 HOH HOH . H 6 HOH B 15 225 162 HOH HOH . H 6 HOH B 16 226 201 HOH HOH . H 6 HOH B 17 227 203 HOH HOH . H 6 HOH B 18 228 204 HOH HOH . H 6 HOH B 19 229 205 HOH HOH . H 6 HOH B 20 230 206 HOH HOH . H 6 HOH B 21 231 207 HOH HOH . H 6 HOH B 22 232 208 HOH HOH . H 6 HOH B 23 233 218 HOH HOH . H 6 HOH B 24 234 219 HOH HOH . H 6 HOH B 25 235 220 HOH HOH . H 6 HOH B 26 236 221 HOH HOH . H 6 HOH B 27 237 222 HOH HOH . H 6 HOH B 28 238 251 HOH HOH . H 6 HOH B 29 239 252 HOH HOH . H 6 HOH B 30 240 259 HOH HOH . H 6 HOH B 31 241 266 HOH HOH . H 6 HOH B 32 242 267 HOH HOH . H 6 HOH B 33 243 268 HOH HOH . H 6 HOH B 34 244 269 HOH HOH . H 6 HOH B 35 245 272 HOH HOH . H 6 HOH B 36 246 273 HOH HOH . H 6 HOH B 37 247 279 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 35.503 _atom_site.Cartn_y 10.507 _atom_site.Cartn_z 32.127 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30.96 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 2 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 1 #