data_1J2Y # _model_server_result.job_id RXEhxzhOzuXFpCPGtBTqPA _model_server_result.datetime_utc '2024-12-03 14:55:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1j2y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":219}' # _entry.id 1J2Y # _exptl.entry_id 1J2Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 190.151 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,3,4-TRIHYDROXY-5-OXO-CYCLOHEXANECARBOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1J2Y _cell.length_a 98.91 _cell.length_b 98.91 _cell.length_c 98.91 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1J2Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 208 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 42 3 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_755 -x+2,-y,z -1 0 0 0 -1 0 0 0 1 197.82 0 0 3 'crystal symmetry operation' 3_757 -x+2,y,-z+2 -1 0 0 0 1 0 0 0 -1 197.82 0 197.82 4 'crystal symmetry operation' 4_557 x,-y,-z+2 1 0 0 0 -1 0 0 0 -1 0 0 197.82 5 'crystal symmetry operation' 5_546 z,x-1,y+1 0 0 1 1 0 0 0 1 0 0 -98.91 98.91 6 'crystal symmetry operation' 6_566 z,-x+1,-y+1 0 0 1 -1 0 0 0 -1 0 0 98.91 98.91 7 'crystal symmetry operation' 7_766 -z+2,-x+1,y+1 0 0 -1 -1 0 0 0 1 0 197.82 98.91 98.91 8 'crystal symmetry operation' 8_746 -z+2,x-1,-y+1 0 0 -1 1 0 0 0 -1 0 197.82 -98.91 98.91 9 'crystal symmetry operation' 9_645 y+1,z-1,x 0 1 0 0 0 1 1 0 0 98.91 -98.91 0 10 'crystal symmetry operation' 10_647 -y+1,z-1,-x+2 0 -1 0 0 0 1 -1 0 0 98.91 -98.91 197.82 11 'crystal symmetry operation' 11_667 y+1,-z+1,-x+2 0 1 0 0 0 -1 -1 0 0 98.91 98.91 197.82 12 'crystal symmetry operation' 12_665 -y+1,-z+1,x 0 -1 0 0 0 -1 1 0 0 98.91 98.91 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H10 O6' _chem_comp.formula_weight 190.151 _chem_comp.id DQA _chem_comp.mon_nstd_flag . _chem_comp.name '1,3,4-TRIHYDROXY-5-OXO-CYCLOHEXANECARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '3-DEHYDROQUINIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DQA sing 83 n n C1 C6 DQA sing 84 n n C1 C DQA sing 85 n n C1 O6 DQA sing 86 n n C2 C3 DQA sing 87 n n C2 H21 DQA sing 88 n n C2 H22 DQA sing 89 n n C3 O3 DQA sing 90 n n C3 C4 DQA sing 91 n n C3 H3 DQA sing 92 n n O3 HO3 DQA sing 93 n n C4 O4 DQA sing 94 n n C4 C5 DQA sing 95 n n C4 H4 DQA sing 96 n n O4 HO4 DQA sing 97 n n C5 C6 DQA sing 98 n n C5 O5 DQA doub 99 n n C6 H61 DQA sing 100 n n C6 H62 DQA sing 101 n n C O1 DQA doub 102 n n C O2 DQA sing 103 n n O2 HO2 DQA sing 104 n n O6 HO6 DQA sing 105 n n # _atom_sites.entry_id 1J2Y _atom_sites.fract_transf_matrix[1][1] 0.01011 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01011 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DQA A 1 219 219 DQA DHQ . C 3 HOH A 1 200 200 HOH TIP . C 3 HOH A 2 201 201 HOH TIP . C 3 HOH A 3 202 202 HOH TIP . C 3 HOH A 4 203 203 HOH TIP . C 3 HOH A 5 204 204 HOH TIP . C 3 HOH A 6 205 205 HOH TIP . C 3 HOH A 7 206 206 HOH TIP . C 3 HOH A 8 207 207 HOH TIP . C 3 HOH A 9 208 208 HOH TIP . C 3 HOH A 10 209 209 HOH TIP . C 3 HOH A 11 210 210 HOH TIP . C 3 HOH A 12 211 211 HOH TIP . C 3 HOH A 13 212 212 HOH TIP . C 3 HOH A 14 213 213 HOH TIP . C 3 HOH A 15 214 214 HOH TIP . C 3 HOH A 16 215 215 HOH TIP . C 3 HOH A 17 216 216 HOH TIP . C 3 HOH A 18 217 217 HOH TIP . C 3 HOH A 19 218 218 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DQA . . . B 2 97.111 -24.558 87.569 1 36.4 ? C1 DQA 219 A 1 HETATM 2 C C2 DQA . . . B 2 97.357 -23.378 88.391 1 32.43 ? C2 DQA 219 A 1 HETATM 3 C C3 DQA . . . B 2 96.688 -22.186 87.871 1 44.78 ? C3 DQA 219 A 1 HETATM 4 O O3 DQA . . . B 2 96.827 -21.044 88.685 1 29.57 ? O3 DQA 219 A 1 HETATM 5 C C4 DQA . . . B 2 97.316 -21.901 86.612 1 52.91 ? C4 DQA 219 A 1 HETATM 6 O O4 DQA . . . B 2 96.883 -20.758 85.957 1 66.72 ? O4 DQA 219 A 1 HETATM 7 C C5 DQA . . . B 2 97.206 -23.101 85.653 1 51.93 ? C5 DQA 219 A 1 HETATM 8 C C6 DQA . . . B 2 97.612 -24.364 86.18 1 36.34 ? C6 DQA 219 A 1 HETATM 9 C C DQA . . . B 2 97.763 -25.726 87.959 1 34.07 ? C DQA 219 A 1 HETATM 10 O O1 DQA . . . B 2 98.6 -25.751 88.979 1 37.88 ? O1 DQA 219 A 1 HETATM 11 O O2 DQA . . . B 2 97.601 -26.887 87.336 1 38.1 ? O2 DQA 219 A 1 HETATM 12 O O5 DQA . . . B 2 96.884 -23.215 84.623 1 41.17 ? O5 DQA 219 A 1 HETATM 13 O O6 DQA . . . B 2 95.762 -24.967 87.707 1 33.01 ? O6 DQA 219 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 13 #