data_1J2Z
#
_model_server_result.job_id            Ox20Cn6X8_f4gWxDx2tpgQ 
_model_server_result.datetime_utc      '2024-10-13 02:24:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1j2z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":409}' 
#
_entry.id    1J2Z 
#
_exptl.entry_id    1J2Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              308.434 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl 1-thio-beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1J2Z 
_cell.length_a            90.686 
_cell.length_b            90.686 
_cell.length_c            148.203 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1J2Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        182 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 63 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PQS hexameric 6 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1,2,3 
A,B,C,D,E,F 2 1,2,3,4,5,6 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 90.686 0 0 
3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 45.343 78.53638 0 
4 'crystal symmetry operation' 10_666 -y+1,-x+1,-z+3/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 45.343 78.53638 222.3045 
5 'crystal symmetry operation' 11_656 -x+y+1,y,-z+3/2 -1 0 0 0 1 0 0 0 -1 90.686 0 222.3045 
6 'crystal symmetry operation' 12_556 x,x-y,-z+3/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 222.3045 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C14 H28 O5 S' 
_chem_comp.formula_weight    308.434 
_chem_comp.id                SOG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'octyl 1-thio-beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     '2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL;1-S-OCTYL-BETA-D-THIOGLUCOSIDE;octyl 1-thio-beta-D-glucoside;octyl 1-thio-D-glucoside;octyl 1-thio-glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 SOG sing 294 n n 
C1 S1 SOG sing 295 n n 
C1 O5 SOG sing 296 n n 
C1 H1 SOG sing 297 n n 
C2 C3 SOG sing 298 n n 
C2 O2 SOG sing 299 n n 
C2 H2 SOG sing 300 n n 
C3 C4 SOG sing 301 n n 
C3 O3 SOG sing 302 n n 
C3 H3 SOG sing 303 n n 
C4 C5 SOG sing 304 n n 
C4 O4 SOG sing 305 n n 
C4 H4 SOG sing 306 n n 
C5 C6 SOG sing 307 n n 
C5 O5 SOG sing 308 n n 
C5 H5 SOG sing 309 n n 
C6 O6 SOG sing 310 n n 
C6 H61 SOG sing 311 n n 
C6 H62 SOG sing 312 n n 
C1' C2' SOG sing 313 n n 
C1' S1 SOG sing 314 n n 
C1' "H1'1" SOG sing 315 n n 
C1' "H1'2" SOG sing 316 n n 
C2' C3' SOG sing 317 n n 
C2' "H2'1" SOG sing 318 n n 
C2' "H2'2" SOG sing 319 n n 
C3' C4' SOG sing 320 n n 
C3' "H3'1" SOG sing 321 n n 
C3' "H3'2" SOG sing 322 n n 
C4' C5' SOG sing 323 n n 
C4' "H4'1" SOG sing 324 n n 
C4' "H4'2" SOG sing 325 n n 
C5' C6' SOG sing 326 n n 
C5' "H5'1" SOG sing 327 n n 
C5' "H5'2" SOG sing 328 n n 
C6' C7' SOG sing 329 n n 
C6' "H6'1" SOG sing 330 n n 
C6' "H6'2" SOG sing 331 n n 
C7' C8' SOG sing 332 n n 
C7' "H7'1" SOG sing 333 n n 
C7' "H7'2" SOG sing 334 n n 
C8' "H8'1" SOG sing 335 n n 
C8' "H8'2" SOG sing 336 n n 
C8' "H8'3" SOG sing 337 n n 
O2 HO2 SOG sing 338 n n 
O3 HO3 SOG sing 339 n n 
O4 HO4 SOG sing 340 n n 
O6 HO6 SOG sing 341 n n 
#
_atom_sites.entry_id                     1J2Z 
_atom_sites.fract_transf_matrix[1][1]    0.011027 
_atom_sites.fract_transf_matrix[1][2]    0.006366 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012733 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006748 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SOG A 1 409 409 SOG SOG . 
C 3 SO4 A 1 412 412 SO4 SO1 . 
D 3 SO4 A 1 413 413 SO4 SO1 . 
E 4 TLA A 1 410 410 TLA TAR . 
F 5 HOH A 1 414 261 HOH TIP . 
F 5 HOH A 2 415 262 HOH TIP . 
F 5 HOH A 3 416 263 HOH TIP . 
F 5 HOH A 4 417 264 HOH TIP . 
F 5 HOH A 5 418 265 HOH TIP . 
F 5 HOH A 6 419 266 HOH TIP . 
F 5 HOH A 7 420 267 HOH TIP . 
F 5 HOH A 8 421 268 HOH TIP . 
F 5 HOH A 9 422 269 HOH TIP . 
F 5 HOH A 10 423 270 HOH TIP . 
F 5 HOH A 11 424 271 HOH TIP . 
F 5 HOH A 12 425 272 HOH TIP . 
F 5 HOH A 13 426 273 HOH TIP . 
F 5 HOH A 14 427 274 HOH TIP . 
F 5 HOH A 15 428 275 HOH TIP . 
F 5 HOH A 16 429 276 HOH TIP . 
F 5 HOH A 17 430 277 HOH TIP . 
F 5 HOH A 18 431 278 HOH TIP . 
F 5 HOH A 19 432 279 HOH TIP . 
F 5 HOH A 20 433 280 HOH TIP . 
F 5 HOH A 21 434 281 HOH TIP . 
F 5 HOH A 22 435 282 HOH TIP . 
F 5 HOH A 23 436 283 HOH TIP . 
F 5 HOH A 24 437 284 HOH TIP . 
F 5 HOH A 25 438 285 HOH TIP . 
F 5 HOH A 26 439 286 HOH TIP . 
F 5 HOH A 27 440 287 HOH TIP . 
F 5 HOH A 28 441 288 HOH TIP . 
F 5 HOH A 29 442 289 HOH TIP . 
F 5 HOH A 30 443 290 HOH TIP . 
F 5 HOH A 31 444 291 HOH TIP . 
F 5 HOH A 32 445 292 HOH TIP . 
F 5 HOH A 33 446 293 HOH TIP . 
F 5 HOH A 34 447 294 HOH TIP . 
F 5 HOH A 35 448 295 HOH TIP . 
F 5 HOH A 36 449 296 HOH TIP . 
F 5 HOH A 37 450 297 HOH TIP . 
F 5 HOH A 38 451 298 HOH TIP . 
F 5 HOH A 39 452 299 HOH TIP . 
F 5 HOH A 40 453 300 HOH TIP . 
F 5 HOH A 41 454 301 HOH TIP . 
F 5 HOH A 42 455 302 HOH TIP . 
F 5 HOH A 43 456 303 HOH TIP . 
F 5 HOH A 44 457 304 HOH TIP . 
F 5 HOH A 45 458 305 HOH TIP . 
F 5 HOH A 46 459 306 HOH TIP . 
F 5 HOH A 47 460 307 HOH TIP . 
F 5 HOH A 48 461 308 HOH TIP . 
F 5 HOH A 49 462 309 HOH TIP . 
F 5 HOH A 50 463 310 HOH TIP . 
F 5 HOH A 51 464 311 HOH TIP . 
F 5 HOH A 52 465 312 HOH TIP . 
F 5 HOH A 53 466 313 HOH TIP . 
F 5 HOH A 54 467 314 HOH TIP . 
F 5 HOH A 55 468 315 HOH TIP . 
F 5 HOH A 56 469 316 HOH TIP . 
F 5 HOH A 57 470 317 HOH TIP . 
F 5 HOH A 58 471 318 HOH TIP . 
F 5 HOH A 59 472 319 HOH TIP . 
F 5 HOH A 60 473 320 HOH TIP . 
F 5 HOH A 61 474 321 HOH TIP . 
F 5 HOH A 62 475 322 HOH TIP . 
F 5 HOH A 63 476 323 HOH TIP . 
F 5 HOH A 64 477 324 HOH TIP . 
F 5 HOH A 65 478 325 HOH TIP . 
F 5 HOH A 66 479 326 HOH TIP . 
F 5 HOH A 67 480 327 HOH TIP . 
F 5 HOH A 68 481 328 HOH TIP . 
F 5 HOH A 69 482 329 HOH TIP . 
F 5 HOH A 70 483 330 HOH TIP . 
F 5 HOH A 71 484 331 HOH TIP . 
F 5 HOH A 72 485 332 HOH TIP . 
F 5 HOH A 73 486 333 HOH TIP . 
F 5 HOH A 74 487 334 HOH TIP . 
F 5 HOH A 75 488 335 HOH TIP . 
F 5 HOH A 76 489 336 HOH TIP . 
F 5 HOH A 77 490 337 HOH TIP . 
F 5 HOH A 78 491 338 HOH TIP . 
F 5 HOH A 79 492 339 HOH TIP . 
F 5 HOH A 80 493 340 HOH TIP . 
F 5 HOH A 81 494 341 HOH TIP . 
F 5 HOH A 82 495 342 HOH TIP . 
F 5 HOH A 83 496 343 HOH TIP . 
F 5 HOH A 84 497 344 HOH TIP . 
F 5 HOH A 85 498 345 HOH TIP . 
F 5 HOH A 86 499 346 HOH TIP . 
F 5 HOH A 87 500 347 HOH TIP . 
F 5 HOH A 88 501 348 HOH TIP . 
F 5 HOH A 89 502 349 HOH TIP . 
F 5 HOH A 90 503 350 HOH TIP . 
F 5 HOH A 91 504 351 HOH TIP . 
F 5 HOH A 92 505 352 HOH TIP . 
F 5 HOH A 93 506 353 HOH TIP . 
F 5 HOH A 94 507 354 HOH TIP . 
F 5 HOH A 95 508 355 HOH TIP . 
F 5 HOH A 96 509 356 HOH TIP . 
F 5 HOH A 97 510 357 HOH TIP . 
F 5 HOH A 98 511 358 HOH TIP . 
F 5 HOH A 99 512 359 HOH TIP . 
F 5 HOH A 100 513 360 HOH TIP . 
F 5 HOH A 101 514 361 HOH TIP . 
F 5 HOH A 102 515 362 HOH TIP . 
F 5 HOH A 103 516 363 HOH TIP . 
F 5 HOH A 104 517 364 HOH TIP . 
F 5 HOH A 105 518 365 HOH TIP . 
F 5 HOH A 106 519 366 HOH TIP . 
F 5 HOH A 107 520 367 HOH TIP . 
F 5 HOH A 108 521 368 HOH TIP . 
F 5 HOH A 109 522 369 HOH TIP . 
F 5 HOH A 110 523 370 HOH TIP . 
F 5 HOH A 111 524 371 HOH TIP . 
F 5 HOH A 112 525 372 HOH TIP . 
F 5 HOH A 113 526 373 HOH TIP . 
F 5 HOH A 114 527 374 HOH TIP . 
F 5 HOH A 115 528 375 HOH TIP . 
F 5 HOH A 116 529 376 HOH TIP . 
F 5 HOH A 117 530 377 HOH TIP . 
F 5 HOH A 118 531 378 HOH TIP . 
F 5 HOH A 119 532 379 HOH TIP . 
F 5 HOH A 120 533 380 HOH TIP . 
F 5 HOH A 121 534 381 HOH TIP . 
F 5 HOH A 122 535 382 HOH TIP . 
F 5 HOH A 123 536 383 HOH TIP . 
F 5 HOH A 124 537 384 HOH TIP . 
F 5 HOH A 125 538 385 HOH TIP . 
F 5 HOH A 126 539 386 HOH TIP . 
F 5 HOH A 127 540 387 HOH TIP . 
F 5 HOH A 128 541 388 HOH TIP . 
F 5 HOH A 129 542 389 HOH TIP . 
F 5 HOH A 130 543 390 HOH TIP . 
F 5 HOH A 131 544 391 HOH TIP . 
F 5 HOH A 132 545 392 HOH TIP . 
F 5 HOH A 133 546 393 HOH TIP . 
F 5 HOH A 134 547 394 HOH TIP . 
F 5 HOH A 135 548 395 HOH TIP . 
F 5 HOH A 136 549 396 HOH TIP . 
F 5 HOH A 137 550 397 HOH TIP . 
F 5 HOH A 138 551 398 HOH TIP . 
F 5 HOH A 139 552 399 HOH TIP . 
F 5 HOH A 140 553 400 HOH TIP . 
F 5 HOH A 141 554 401 HOH TIP . 
F 5 HOH A 142 555 402 HOH TIP . 
F 5 HOH A 143 556 403 HOH TIP . 
F 5 HOH A 144 557 404 HOH TIP . 
F 5 HOH A 145 558 405 HOH TIP . 
F 5 HOH A 146 559 406 HOH TIP . 
F 5 HOH A 147 560 407 HOH TIP . 
F 5 HOH A 148 561 408 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 SOG . . . B 2 38.265 12.229 130.645 0.7 61.56 ? C1 SOG 409 A 1 
HETATM 2 C C2 SOG . . . B 2 38.184 11.411 131.958 0.7 58.64 ? C2 SOG 409 A 1 
HETATM 3 C C3 SOG . . . B 2 38.214 12.367 133.159 0.7 53.21 ? C3 SOG 409 A 1 
HETATM 4 C C4 SOG . . . B 2 39.524 13.16 133.101 0.7 53.09 ? C4 SOG 409 A 1 
HETATM 5 C C5 SOG . . . B 2 39.573 13.96 131.774 0.7 55.19 ? C5 SOG 409 A 1 
HETATM 6 C C6 SOG . . . B 2 40.872 14.746 131.664 0.7 57.81 ? C6 SOG 409 A 1 
HETATM 7 C C1' SOG . . . B 2 37.583 11.893 128.368 0.7 66.77 ? C1' SOG 409 A 1 
HETATM 8 C C2' SOG . . . B 2 38.575 11.937 127.222 0.7 61.34 ? C2' SOG 409 A 1 
HETATM 9 C C3' SOG . . . B 2 37.878 11.752 125.887 0.7 59.84 ? C3' SOG 409 A 1 
HETATM 10 C C4' SOG . . . B 2 38.868 11.791 124.732 0.7 52.2 ? C4' SOG 409 A 1 
HETATM 11 C C5' SOG . . . B 2 38.162 11.603 123.396 0.7 48.62 ? C5' SOG 409 A 1 
HETATM 12 C C6' SOG . . . B 2 39.128 11.78 122.243 0.7 40.3 ? C6' SOG 409 A 1 
HETATM 13 C C7' SOG . . . B 2 38.441 11.598 120.91 0.7 43.17 ? C7' SOG 409 A 1 
HETATM 14 C C8' SOG . . . B 2 39.427 11.782 119.781 0.7 37.89 ? C8' SOG 409 A 1 
HETATM 15 S S1 SOG . . . B 2 38.259 11.351 129.509 0.7 70.96 ? S1 SOG 409 A 1 
HETATM 16 O O2 SOG . . . B 2 36.988 10.642 131.981 0.7 56.14 ? O2 SOG 409 A 1 
HETATM 17 O O3 SOG . . . B 2 38.152 11.63 134.363 0.7 55.49 ? O3 SOG 409 A 1 
HETATM 18 O O4 SOG . . . B 2 39.598 14.048 134.203 0.7 41.6 ? O4 SOG 409 A 1 
HETATM 19 O O5 SOG . . . B 2 39.479 13.033 130.655 0.7 60.73 ? O5 SOG 409 A 1 
HETATM 20 O O6 SOG . . . B 2 40.747 15.983 132.339 0.7 61.21 ? O6 SOG 409 A 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           20 
#