data_1J3H # _model_server_result.job_id 9OUkxs-qoOz39PR-qoooww _model_server_result.datetime_utc '2025-02-26 15:58:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1j3h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":351}' # _entry.id 1J3H # _exptl.entry_id 1J3H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.71 _cell.angle_gamma 90 _cell.entry_id 1J3H _cell.length_a 48.776 _cell.length_b 143.601 _cell.length_c 62.809 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1J3H _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TRP 196 A TRP 196 1_555 A N TPO 197 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C TPO 197 A TPO 197 1_555 A N LEU 198 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C LEU 198 A LEU 198 1_555 A N CME 199 A CME 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C CME 199 A CME 199 1_555 A N GLY 200 A GLY 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale5 A C VAL 337 A VAL 337 1_555 A N SEP 338 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale6 A C SEP 338 A SEP 338 1_555 A N ILE 339 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale7 B C TRP 196 B TRP 196 1_555 B N TPO 197 B TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale8 B C TPO 197 B TPO 197 1_555 B N LEU 198 B LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale9 B C LEU 198 B LEU 198 1_555 B N CME 199 B CME 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale10 B C CME 199 B CME 199 1_555 B N GLY 200 B GLY 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 B C VAL 337 B VAL 337 1_555 B N SEP 338 B SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale12 B C SEP 338 B SEP 338 1_555 B N ILE 339 B ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 256 n n C1 H11 MPD sing 257 n n C1 H12 MPD sing 258 n n C1 H13 MPD sing 259 n n C2 O2 MPD sing 260 n n C2 CM MPD sing 261 n n C2 C3 MPD sing 262 n n O2 HO2 MPD sing 263 n n CM HM1 MPD sing 264 n n CM HM2 MPD sing 265 n n CM HM3 MPD sing 266 n n C3 C4 MPD sing 267 n n C3 H31 MPD sing 268 n n C3 H32 MPD sing 269 n n C4 O4 MPD sing 270 n n C4 C5 MPD sing 271 n n C4 H4 MPD sing 272 n n O4 HO4 MPD sing 273 n n C5 H51 MPD sing 274 n n C5 H52 MPD sing 275 n n C5 H53 MPD sing 276 n n # _atom_sites.entry_id 1J3H _atom_sites.fract_transf_matrix[1][1] 0.020502 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005767 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006964 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016539 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MPD A 1 351 351 MPD MPD . D 2 MPD B 1 352 352 MPD MPD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . C 2 68.954 77.197 53.114 1 58.87 ? C1 MPD 351 A 1 HETATM 2 C C2 MPD . . . C 2 68.84 77.222 51.594 1 58.15 ? C2 MPD 351 A 1 HETATM 3 O O2 MPD . . . C 2 68.96 75.881 51.076 1 61.57 ? O2 MPD 351 A 1 HETATM 4 C CM MPD . . . C 2 69.958 78.083 51.007 1 57.78 ? CM MPD 351 A 1 HETATM 5 C C3 MPD . . . C 2 67.479 77.807 51.194 1 55.93 ? C3 MPD 351 A 1 HETATM 6 C C4 MPD . . . C 2 66.235 77.07 51.681 1 54.84 ? C4 MPD 351 A 1 HETATM 7 O O4 MPD . . . C 2 66.173 77.171 53.106 1 52.44 ? O4 MPD 351 A 1 HETATM 8 C C5 MPD . . . C 2 64.954 77.666 51.05 1 52.39 ? C5 MPD 351 A 1 # _model_server_stats.io_time_ms 115 _model_server_stats.parse_time_ms 285 _model_server_stats.create_model_time_ms 195 _model_server_stats.query_time_ms 1680 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #