data_1J3S # _model_server_result.job_id UdMTy8f6vyGp192BnW4F3w _model_server_result.datetime_utc '2024-10-31 07:21:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1j3s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":105}' # _entry.id 1J3S # _exptl.entry_id 1J3S _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1J3S _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1J3S _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 14 A CYS 14 1_555 B CAB HEC . A HEC 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.812 ? covale ? covale2 A SG CYS 17 A CYS 17 1_555 B CAC HEC . A HEC 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? metalc ? metalc1 A NE2 HIS 18 A HIS 18 1_555 B FE HEC . A HEC 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc2 A SD MET 80 A MET 80 1_555 B FE HEC . A HEC 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 1J3S _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id HEC _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 105 _pdbx_nonpoly_scheme.auth_seq_num 105 _pdbx_nonpoly_scheme.pdb_mon_id HEC _pdbx_nonpoly_scheme.auth_mon_id HEC _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . B 2 1.361 0.58 -9.573 1 0 ? FE HEC 105 A 1 HETATM 2 C CHA HEC . . . B 2 3.595 -1.958 -9.394 1 0 ? CHA HEC 105 A 1 HETATM 3 C CHB HEC . . . B 2 1.525 0.959 -6.217 1 0 ? CHB HEC 105 A 1 HETATM 4 C CHC HEC . . . B 2 -0.909 3.075 -9.748 1 0 ? CHC HEC 105 A 1 HETATM 5 C CHD HEC . . . B 2 1.096 0.099 -12.899 1 0 ? CHD HEC 105 A 1 HETATM 6 N NA HEC . . . B 2 2.364 -0.285 -8.131 1 0 ? NA HEC 105 A 1 HETATM 7 C C1A HEC . . . B 2 3.252 -1.331 -8.226 1 0 ? C1A HEC 105 A 1 HETATM 8 C C2A HEC . . . B 2 3.763 -1.713 -6.937 1 0 ? C2A HEC 105 A 1 HETATM 9 C C3A HEC . . . B 2 3.184 -0.892 -6.037 1 0 ? C3A HEC 105 A 1 HETATM 10 C C4A HEC . . . B 2 2.315 -0.012 -6.784 1 0 ? C4A HEC 105 A 1 HETATM 11 C CMA HEC . . . B 2 3.401 -0.889 -4.562 1 0 ? CMA HEC 105 A 1 HETATM 12 C CAA HEC . . . B 2 4.727 -2.811 -6.664 1 0 ? CAA HEC 105 A 1 HETATM 13 C CBA HEC . . . B 2 4.035 -4.114 -6.257 1 0 ? CBA HEC 105 A 1 HETATM 14 C CGA HEC . . . B 2 4.922 -5.3 -6.642 1 0 ? CGA HEC 105 A 1 HETATM 15 O O1A HEC . . . B 2 5.448 -5.289 -7.741 1 0 ? O1A HEC 105 A 1 HETATM 16 O O2A HEC . . . B 2 5.061 -6.199 -5.829 1 0 ? O2A HEC 105 A 1 HETATM 17 N NB HEC . . . B 2 0.52 1.776 -8.275 1 0 ? NB HEC 105 A 1 HETATM 18 C C1B HEC . . . B 2 0.68 1.793 -6.909 1 0 ? C1B HEC 105 A 1 HETATM 19 C C2B HEC . . . B 2 -0.167 2.785 -6.291 1 0 ? C2B HEC 105 A 1 HETATM 20 C C3B HEC . . . B 2 -0.845 3.386 -7.289 1 0 ? C3B HEC 105 A 1 HETATM 21 C C4B HEC . . . B 2 -0.416 2.757 -8.51 1 0 ? C4B HEC 105 A 1 HETATM 22 C CMB HEC . . . B 2 -0.303 3.061 -4.835 1 0 ? CMB HEC 105 A 1 HETATM 23 C CAB HEC . . . B 2 -1.858 4.473 -7.159 1 0 ? CAB HEC 105 A 1 HETATM 24 C CBB HEC . . . B 2 -1.418 5.601 -6.221 1 0 ? CBB HEC 105 A 1 HETATM 25 N NC HEC . . . B 2 0.349 1.426 -11.01 1 0 ? NC HEC 105 A 1 HETATM 26 C C1C HEC . . . B 2 -0.555 2.457 -10.919 1 0 ? C1C HEC 105 A 1 HETATM 27 C C2C HEC . . . B 2 -1.124 2.773 -12.205 1 0 ? C2C HEC 105 A 1 HETATM 28 C C3C HEC . . . B 2 -0.566 1.922 -13.083 1 0 ? C3C HEC 105 A 1 HETATM 29 C C4C HEC . . . B 2 0.343 1.098 -12.34 1 0 ? C4C HEC 105 A 1 HETATM 30 C CMC HEC . . . B 2 -2.126 3.833 -12.501 1 0 ? CMC HEC 105 A 1 HETATM 31 C CAC HEC . . . B 2 -0.856 1.811 -14.534 1 0 ? CAC HEC 105 A 1 HETATM 32 C CBC HEC . . . B 2 -1.352 3.122 -15.152 1 0 ? CBC HEC 105 A 1 HETATM 33 N ND HEC . . . B 2 2.185 -0.639 -10.864 1 0 ? ND HEC 105 A 1 HETATM 34 C C1D HEC . . . B 2 1.961 -0.713 -12.213 1 0 ? C1D HEC 105 A 1 HETATM 35 C C2D HEC . . . B 2 2.749 -1.748 -12.827 1 0 ? C2D HEC 105 A 1 HETATM 36 C C3D HEC . . . B 2 3.452 -2.332 -11.84 1 0 ? C3D HEC 105 A 1 HETATM 37 C C4D HEC . . . B 2 3.101 -1.639 -10.628 1 0 ? C4D HEC 105 A 1 HETATM 38 C CMD HEC . . . B 2 2.814 -2.064 -14.275 1 0 ? CMD HEC 105 A 1 HETATM 39 C CAD HEC . . . B 2 4.395 -3.479 -11.97 1 0 ? CAD HEC 105 A 1 HETATM 40 C CBD HEC . . . B 2 5.849 -3.028 -12.097 1 0 ? CBD HEC 105 A 1 HETATM 41 C CGD HEC . . . B 2 6.256 -3.027 -13.571 1 0 ? CGD HEC 105 A 1 HETATM 42 O O1D HEC . . . B 2 5.456 -2.593 -14.385 1 0 ? O1D HEC 105 A 1 HETATM 43 O O2D HEC . . . B 2 7.358 -3.462 -13.863 1 0 ? O2D HEC 105 A 1 HETATM 44 H HHA HEC . . . B 2 4.307 -2.785 -9.334 1 0 ? HHA HEC 105 A 1 HETATM 45 H HHB HEC . . . B 2 1.57 1.074 -5.135 1 0 ? HHB HEC 105 A 1 HETATM 46 H HHC HEC . . . B 2 -1.64 3.881 -9.807 1 0 ? HHC HEC 105 A 1 HETATM 47 H HHD HEC . . . B 2 0.995 -0.063 -13.97 1 0 ? HHD HEC 105 A 1 HETATM 48 H HMA1 HEC . . . B 2 4.316 -0.363 -4.333 1 0 ? HMA1 HEC 105 A 1 HETATM 49 H HMA2 HEC . . . B 2 3.472 -1.907 -4.209 1 0 ? HMA2 HEC 105 A 1 HETATM 50 H HMA3 HEC . . . B 2 2.571 -0.396 -4.078 1 0 ? HMA3 HEC 105 A 1 HETATM 51 H HAA1 HEC . . . B 2 5.386 -2.505 -5.874 1 0 ? HAA1 HEC 105 A 1 HETATM 52 H HAA2 HEC . . . B 2 5.311 -2.992 -7.555 1 0 ? HAA2 HEC 105 A 1 HETATM 53 H HBA1 HEC . . . B 2 3.086 -4.194 -6.766 1 0 ? HBA1 HEC 105 A 1 HETATM 54 H HBA2 HEC . . . B 2 3.873 -4.117 -5.189 1 0 ? HBA2 HEC 105 A 1 HETATM 55 H HMB1 HEC . . . B 2 -1.302 2.809 -4.512 1 0 ? HMB1 HEC 105 A 1 HETATM 56 H HMB2 HEC . . . B 2 -0.118 4.105 -4.652 1 0 ? HMB2 HEC 105 A 1 HETATM 57 H HMB3 HEC . . . B 2 0.413 2.466 -4.287 1 0 ? HMB3 HEC 105 A 1 HETATM 58 H HAB HEC . . . B 2 -2.028 4.949 -8.109 1 0 ? HAB HEC 105 A 1 HETATM 59 H HBB1 HEC . . . B 2 -0.351 5.742 -6.303 1 0 ? HBB1 HEC 105 A 1 HETATM 60 H HBB2 HEC . . . B 2 -1.669 5.342 -5.203 1 0 ? HBB2 HEC 105 A 1 HETATM 61 H HBB3 HEC . . . B 2 -1.923 6.515 -6.495 1 0 ? HBB3 HEC 105 A 1 HETATM 62 H HMC1 HEC . . . B 2 -2.523 4.222 -11.575 1 0 ? HMC1 HEC 105 A 1 HETATM 63 H HMC2 HEC . . . B 2 -1.652 4.632 -13.053 1 0 ? HMC2 HEC 105 A 1 HETATM 64 H HMC3 HEC . . . B 2 -2.929 3.415 -13.09 1 0 ? HMC3 HEC 105 A 1 HETATM 65 H HAC HEC . . . B 2 0.046 1.567 -15.073 1 0 ? HAC HEC 105 A 1 HETATM 66 H HBC1 HEC . . . B 2 -2.427 3.178 -15.062 1 0 ? HBC1 HEC 105 A 1 HETATM 67 H HBC2 HEC . . . B 2 -1.074 3.156 -16.194 1 0 ? HBC2 HEC 105 A 1 HETATM 68 H HBC3 HEC . . . B 2 -0.904 3.957 -14.632 1 0 ? HBC3 HEC 105 A 1 HETATM 69 H HMD1 HEC . . . B 2 3.335 -1.269 -14.789 1 0 ? HMD1 HEC 105 A 1 HETATM 70 H HMD2 HEC . . . B 2 3.341 -2.994 -14.417 1 0 ? HMD2 HEC 105 A 1 HETATM 71 H HMD3 HEC . . . B 2 1.813 -2.151 -14.668 1 0 ? HMD3 HEC 105 A 1 HETATM 72 H HAD1 HEC . . . B 2 4.299 -4.109 -11.099 1 0 ? HAD1 HEC 105 A 1 HETATM 73 H HAD2 HEC . . . B 2 4.129 -4.052 -12.847 1 0 ? HAD2 HEC 105 A 1 HETATM 74 H HBD1 HEC . . . B 2 6.483 -3.706 -11.548 1 0 ? HBD1 HEC 105 A 1 HETATM 75 H HBD2 HEC . . . B 2 5.953 -2.032 -11.692 1 0 ? HBD2 HEC 105 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 52 _model_server_stats.query_time_ms 6037 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 75 #