data_1J4U # _model_server_result.job_id GOtk2e611j2dCXsTGbssgQ _model_server_result.datetime_utc '2024-10-24 04:24:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1j4u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 1J4U # _exptl.entry_id 1J4U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.182 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'methyl alpha-D-mannopyranoside' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1J4U _cell.length_a 129.2 _cell.length_b 129.2 _cell.length_c 78.61 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1J4U _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C AYA 1 A AYA 1 1_555 A N SER 2 A SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale2 B C AYA 1 B AYA 1 1_555 B N SER 2 B SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale3 C C AYA 1 C AYA 1 1_555 C N SER 2 C SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.485 ? covale ? covale4 D C AYA 1 D AYA 1 1_555 D N SER 2 D SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C7 H14 O6' _chem_comp.formula_weight 194.182 _chem_comp.id MMA _chem_comp.mon_nstd_flag n _chem_comp.name 'methyl alpha-D-mannopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'O1-METHYL-MANNOSE;methyl alpha-D-mannoside;methyl D-mannoside;methyl mannoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MMA sing 241 n n C1 O1 MMA sing 242 n n C1 O5 MMA sing 243 n n C1 H1 MMA sing 244 n n C2 C3 MMA sing 245 n n C2 O2 MMA sing 246 n n C2 H2 MMA sing 247 n n C3 C4 MMA sing 248 n n C3 O3 MMA sing 249 n n C3 H3 MMA sing 250 n n C4 C5 MMA sing 251 n n C4 O4 MMA sing 252 n n C4 H4 MMA sing 253 n n C5 C6 MMA sing 254 n n C5 O5 MMA sing 255 n n C5 H5 MMA sing 256 n n C6 O6 MMA sing 257 n n C6 H61 MMA sing 258 n n C6 H62 MMA sing 259 n n C7 O1 MMA sing 260 n n C7 H71 MMA sing 261 n n C7 H72 MMA sing 262 n n C7 H73 MMA sing 263 n n O2 HO2 MMA sing 264 n n O3 HO3 MMA sing 265 n n O4 HO4 MMA sing 266 n n O6 HO6 MMA sing 267 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MMA DManp[1Me]a 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MMA 1-methyl-a-D-mannopyranose 'COMMON NAME' GMML 1 MMA o1-methyl-mannose 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 # _atom_sites.entry_id 1J4U _atom_sites.fract_transf_matrix[1][1] 0.00774 _atom_sites.fract_transf_matrix[1][2] 0.004469 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008937 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012721 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MMA A 1 401 200 MMA MMA . F 2 MMA B 1 402 200 MMA MMA . G 2 MMA C 1 403 200 MMA MMA . H 2 MMA D 1 404 200 MMA MMA . I 3 HOH A 1 202 202 HOH HOH . I 3 HOH A 2 203 203 HOH HOH . I 3 HOH A 3 204 204 HOH HOH . I 3 HOH A 4 205 205 HOH HOH . I 3 HOH A 5 206 206 HOH HOH . I 3 HOH A 6 207 207 HOH HOH . I 3 HOH A 7 208 208 HOH HOH . I 3 HOH A 8 209 209 HOH HOH . I 3 HOH A 9 211 211 HOH HOH . I 3 HOH A 10 212 212 HOH HOH . I 3 HOH A 11 215 215 HOH HOH . I 3 HOH A 12 216 216 HOH HOH . I 3 HOH A 13 217 217 HOH HOH . I 3 HOH A 14 248 248 HOH HOH . I 3 HOH A 15 249 249 HOH HOH . I 3 HOH A 16 250 250 HOH HOH . I 3 HOH A 17 251 251 HOH HOH . I 3 HOH A 18 253 253 HOH HOH . I 3 HOH A 19 254 254 HOH HOH . I 3 HOH A 20 255 255 HOH HOH . I 3 HOH A 21 267 267 HOH HOH . I 3 HOH A 22 268 268 HOH HOH . I 3 HOH A 23 278 278 HOH HOH . I 3 HOH A 24 280 280 HOH HOH . I 3 HOH A 25 281 281 HOH HOH . I 3 HOH A 26 282 282 HOH HOH . I 3 HOH A 27 283 283 HOH HOH . I 3 HOH A 28 284 284 HOH HOH . I 3 HOH A 29 285 285 HOH HOH . I 3 HOH A 30 286 286 HOH HOH . I 3 HOH A 31 287 287 HOH HOH . I 3 HOH A 32 288 288 HOH HOH . I 3 HOH A 33 289 289 HOH HOH . I 3 HOH A 34 290 290 HOH HOH . I 3 HOH A 35 291 291 HOH HOH . I 3 HOH A 36 292 292 HOH HOH . I 3 HOH A 37 293 293 HOH HOH . I 3 HOH A 38 294 294 HOH HOH . I 3 HOH A 39 295 295 HOH HOH . I 3 HOH A 40 296 296 HOH HOH . I 3 HOH A 41 310 310 HOH HOH . I 3 HOH A 42 311 311 HOH HOH . I 3 HOH A 43 312 312 HOH HOH . I 3 HOH A 44 313 313 HOH HOH . I 3 HOH A 45 314 314 HOH HOH . I 3 HOH A 46 315 315 HOH HOH . I 3 HOH A 47 316 316 HOH HOH . I 3 HOH A 48 317 317 HOH HOH . I 3 HOH A 49 318 318 HOH HOH . I 3 HOH A 50 327 327 HOH HOH . I 3 HOH A 51 328 328 HOH HOH . J 3 HOH B 1 213 213 HOH HOH . J 3 HOH B 2 214 214 HOH HOH . J 3 HOH B 3 219 219 HOH HOH . J 3 HOH B 4 220 220 HOH HOH . J 3 HOH B 5 221 221 HOH HOH . J 3 HOH B 6 222 222 HOH HOH . J 3 HOH B 7 223 223 HOH HOH . J 3 HOH B 8 224 224 HOH HOH . J 3 HOH B 9 225 225 HOH HOH . J 3 HOH B 10 226 226 HOH HOH . J 3 HOH B 11 227 227 HOH HOH . J 3 HOH B 12 228 228 HOH HOH . J 3 HOH B 13 258 258 HOH HOH . J 3 HOH B 14 260 260 HOH HOH . J 3 HOH B 15 261 261 HOH HOH . J 3 HOH B 16 262 262 HOH HOH . J 3 HOH B 17 272 272 HOH HOH . J 3 HOH B 18 273 273 HOH HOH . J 3 HOH B 19 297 297 HOH HOH . J 3 HOH B 20 298 298 HOH HOH . J 3 HOH B 21 299 299 HOH HOH . J 3 HOH B 22 300 300 HOH HOH . J 3 HOH B 23 301 301 HOH HOH . J 3 HOH B 24 302 302 HOH HOH . J 3 HOH B 25 303 303 HOH HOH . J 3 HOH B 26 304 304 HOH HOH . J 3 HOH B 27 305 305 HOH HOH . J 3 HOH B 28 306 306 HOH HOH . J 3 HOH B 29 307 307 HOH HOH . J 3 HOH B 30 308 308 HOH HOH . J 3 HOH B 31 309 309 HOH HOH . J 3 HOH B 32 319 319 HOH HOH . J 3 HOH B 33 324 324 HOH HOH . K 3 HOH C 1 210 210 HOH HOH . K 3 HOH C 2 229 229 HOH HOH . K 3 HOH C 3 230 230 HOH HOH . K 3 HOH C 4 231 231 HOH HOH . K 3 HOH C 5 232 232 HOH HOH . K 3 HOH C 6 233 233 HOH HOH . K 3 HOH C 7 234 234 HOH HOH . K 3 HOH C 8 235 235 HOH HOH . K 3 HOH C 9 237 237 HOH HOH . K 3 HOH C 10 239 239 HOH HOH . K 3 HOH C 11 240 240 HOH HOH . K 3 HOH C 12 241 241 HOH HOH . K 3 HOH C 13 252 252 HOH HOH . K 3 HOH C 14 256 256 HOH HOH . K 3 HOH C 15 263 263 HOH HOH . K 3 HOH C 16 269 269 HOH HOH . K 3 HOH C 17 270 270 HOH HOH . K 3 HOH C 18 271 271 HOH HOH . K 3 HOH C 19 274 274 HOH HOH . K 3 HOH C 20 279 279 HOH HOH . K 3 HOH C 21 320 320 HOH HOH . K 3 HOH C 22 321 321 HOH HOH . K 3 HOH C 23 322 322 HOH HOH . K 3 HOH C 24 323 323 HOH HOH . L 3 HOH D 1 218 218 HOH HOH . L 3 HOH D 2 236 236 HOH HOH . L 3 HOH D 3 238 238 HOH HOH . L 3 HOH D 4 242 242 HOH HOH . L 3 HOH D 5 243 243 HOH HOH . L 3 HOH D 6 244 244 HOH HOH . L 3 HOH D 7 245 245 HOH HOH . L 3 HOH D 8 246 246 HOH HOH . L 3 HOH D 9 247 247 HOH HOH . L 3 HOH D 10 257 257 HOH HOH . L 3 HOH D 11 259 259 HOH HOH . L 3 HOH D 12 264 264 HOH HOH . L 3 HOH D 13 265 265 HOH HOH . L 3 HOH D 14 266 266 HOH HOH . L 3 HOH D 15 275 275 HOH HOH . L 3 HOH D 16 276 276 HOH HOH . L 3 HOH D 17 277 277 HOH HOH . L 3 HOH D 18 325 325 HOH HOH . L 3 HOH D 19 326 326 HOH HOH . L 3 HOH D 20 329 329 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MMA . . . E 2 77.118 47.366 33.839 1 42.9 ? C1 MMA 401 A 1 HETATM 2 C C2 MMA . . . E 2 75.762 47.112 33.134 1 42.9 ? C2 MMA 401 A 1 HETATM 3 C C3 MMA . . . E 2 75.86 45.898 32.195 1 42.9 ? C3 MMA 401 A 1 HETATM 4 C C4 MMA . . . E 2 76.956 46.138 31.171 1 42.9 ? C4 MMA 401 A 1 HETATM 5 C C5 MMA . . . E 2 78.283 46.388 31.888 1 42.9 ? C5 MMA 401 A 1 HETATM 6 C C6 MMA . . . E 2 79.389 46.695 30.895 1 42.9 ? C6 MMA 401 A 1 HETATM 7 C C7 MMA . . . E 2 78.023 45.299 35.377 1 42.9 ? C7 MMA 401 A 1 HETATM 8 O O1 MMA . . . E 2 77.274 46.491 34.895 1 42.9 ? O1 MMA 401 A 1 HETATM 9 O O2 MMA . . . E 2 75.342 48.264 32.422 1 42.9 ? O2 MMA 401 A 1 HETATM 10 O O3 MMA . . . E 2 74.617 45.68 31.535 1 42.9 ? O3 MMA 401 A 1 HETATM 11 O O4 MMA . . . E 2 77.064 45.019 30.303 1 42.9 ? O4 MMA 401 A 1 HETATM 12 O O5 MMA . . . E 2 78.15 47.522 32.783 1 42.9 ? O5 MMA 401 A 1 HETATM 13 O O6 MMA . . . E 2 79.45 48.092 30.564 1 42.9 ? O6 MMA 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #