data_1J5P # _model_server_result.job_id YOlas5LEnCrzYvNC1fyV1A _model_server_result.datetime_utc '2025-07-04 13:51:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1j5p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1J5P # _exptl.entry_id 1J5P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1J5P _cell.length_a 63.2 _cell.length_b 63.2 _cell.length_c 126.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1J5P _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 63.2 63.2 63.1 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 1J5P _atom_sites.fract_transf_matrix[1][1] 0.015823 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015823 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007924 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 300 300 NAD NAD . C 3 HOH A 1 301 1 HOH HOH . C 3 HOH A 2 302 2 HOH HOH . C 3 HOH A 3 303 3 HOH HOH . C 3 HOH A 4 304 4 HOH HOH . C 3 HOH A 5 305 5 HOH HOH . C 3 HOH A 6 306 6 HOH HOH . C 3 HOH A 7 307 7 HOH HOH . C 3 HOH A 8 308 8 HOH HOH . C 3 HOH A 9 309 9 HOH HOH . C 3 HOH A 10 310 10 HOH HOH . C 3 HOH A 11 311 11 HOH HOH . C 3 HOH A 12 312 12 HOH HOH . C 3 HOH A 13 313 13 HOH HOH . C 3 HOH A 14 314 14 HOH HOH . C 3 HOH A 15 315 15 HOH HOH . C 3 HOH A 16 316 16 HOH HOH . C 3 HOH A 17 317 17 HOH HOH . C 3 HOH A 18 318 18 HOH HOH . C 3 HOH A 19 319 19 HOH HOH . C 3 HOH A 20 320 20 HOH HOH . C 3 HOH A 21 321 21 HOH HOH . C 3 HOH A 22 322 22 HOH HOH . C 3 HOH A 23 323 23 HOH HOH . C 3 HOH A 24 324 24 HOH HOH . C 3 HOH A 25 325 25 HOH HOH . C 3 HOH A 26 326 26 HOH HOH . C 3 HOH A 27 327 27 HOH HOH . C 3 HOH A 28 328 28 HOH HOH . C 3 HOH A 29 329 29 HOH HOH . C 3 HOH A 30 330 30 HOH HOH . C 3 HOH A 31 331 31 HOH HOH . C 3 HOH A 32 332 32 HOH HOH . C 3 HOH A 33 333 33 HOH HOH . C 3 HOH A 34 334 34 HOH HOH . C 3 HOH A 35 335 35 HOH HOH . C 3 HOH A 36 336 36 HOH HOH . C 3 HOH A 37 337 37 HOH HOH . C 3 HOH A 38 338 38 HOH HOH . C 3 HOH A 39 339 39 HOH HOH . C 3 HOH A 40 340 40 HOH HOH . C 3 HOH A 41 341 41 HOH HOH . C 3 HOH A 42 342 42 HOH HOH . C 3 HOH A 43 343 43 HOH HOH . C 3 HOH A 44 344 44 HOH HOH . C 3 HOH A 45 345 45 HOH HOH . C 3 HOH A 46 346 46 HOH HOH . C 3 HOH A 47 347 47 HOH HOH . C 3 HOH A 48 348 48 HOH HOH . C 3 HOH A 49 349 49 HOH HOH . C 3 HOH A 50 350 50 HOH HOH . C 3 HOH A 51 351 51 HOH HOH . C 3 HOH A 52 352 52 HOH HOH . C 3 HOH A 53 353 53 HOH HOH . C 3 HOH A 54 354 54 HOH HOH . C 3 HOH A 55 355 55 HOH HOH . C 3 HOH A 56 356 56 HOH HOH . C 3 HOH A 57 357 57 HOH HOH . C 3 HOH A 58 358 58 HOH HOH . C 3 HOH A 59 359 59 HOH HOH . C 3 HOH A 60 360 60 HOH HOH . C 3 HOH A 61 361 61 HOH HOH . C 3 HOH A 62 362 62 HOH HOH . C 3 HOH A 63 363 63 HOH HOH . C 3 HOH A 64 364 64 HOH HOH . C 3 HOH A 65 365 65 HOH HOH . C 3 HOH A 66 366 66 HOH HOH . C 3 HOH A 67 367 67 HOH HOH . C 3 HOH A 68 368 68 HOH HOH . C 3 HOH A 69 369 69 HOH HOH . C 3 HOH A 70 370 70 HOH HOH . C 3 HOH A 71 371 71 HOH HOH . C 3 HOH A 72 372 72 HOH HOH . C 3 HOH A 73 373 73 HOH HOH . C 3 HOH A 74 374 74 HOH HOH . C 3 HOH A 75 375 75 HOH HOH . C 3 HOH A 76 376 76 HOH HOH . C 3 HOH A 77 377 77 HOH HOH . C 3 HOH A 78 378 78 HOH HOH . C 3 HOH A 79 379 79 HOH HOH . C 3 HOH A 80 380 80 HOH HOH . C 3 HOH A 81 381 81 HOH HOH . C 3 HOH A 82 382 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 20.583 8.682 24.892 1 39.43 ? PA NAD 300 A 1 HETATM 2 O O1A NAD . . . B 2 20.512 7.888 23.63 1 41.51 ? O1A NAD 300 A 1 HETATM 3 O O2A NAD . . . B 2 20.597 7.908 26.134 1 38.25 ? O2A NAD 300 A 1 HETATM 4 O O5B NAD . . . B 2 19.384 9.741 24.919 1 38.95 ? O5B NAD 300 A 1 HETATM 5 C C5B NAD . . . B 2 19.162 10.615 23.824 1 40.25 ? C5B NAD 300 A 1 HETATM 6 C C4B NAD . . . B 2 17.705 10.898 23.711 1 41.33 ? C4B NAD 300 A 1 HETATM 7 O O4B NAD . . . B 2 17.611 11.808 22.609 1 41.64 ? O4B NAD 300 A 1 HETATM 8 C C3B NAD . . . B 2 16.835 9.672 23.346 1 43.6 ? C3B NAD 300 A 1 HETATM 9 O O3B NAD . . . B 2 15.741 9.445 24.289 1 42.96 ? O3B NAD 300 A 1 HETATM 10 C C2B NAD . . . B 2 16.317 9.98 21.928 1 42.58 ? C2B NAD 300 A 1 HETATM 11 O O2B NAD . . . B 2 15.008 9.423 21.589 1 42.6 ? O2B NAD 300 A 1 HETATM 12 C C1B NAD . . . B 2 16.393 11.51 21.914 1 43.65 ? C1B NAD 300 A 1 HETATM 13 N N9A NAD . . . B 2 16.493 12.121 20.56 1 39.62 ? N9A NAD 300 A 1 HETATM 14 C C8A NAD . . . B 2 17.385 11.793 19.586 1 41.22 ? C8A NAD 300 A 1 HETATM 15 N N7A NAD . . . B 2 17.214 12.532 18.483 1 39.38 ? N7A NAD 300 A 1 HETATM 16 C C5A NAD . . . B 2 16.202 13.317 18.801 1 38.81 ? C5A NAD 300 A 1 HETATM 17 C C6A NAD . . . B 2 15.631 14.298 17.958 1 36.54 ? C6A NAD 300 A 1 HETATM 18 N N6A NAD . . . B 2 16.11 14.486 16.728 1 38.04 ? N6A NAD 300 A 1 HETATM 19 N N1A NAD . . . B 2 14.581 15.028 18.459 1 35.52 ? N1A NAD 300 A 1 HETATM 20 C C2A NAD . . . B 2 14.12 14.805 19.715 1 30.88 ? C2A NAD 300 A 1 HETATM 21 N N3A NAD . . . B 2 14.669 13.861 20.518 1 36.42 ? N3A NAD 300 A 1 HETATM 22 C C4A NAD . . . B 2 15.72 13.093 20.094 1 38.75 ? C4A NAD 300 A 1 HETATM 23 O O3 NAD . . . B 2 21.84 9.679 24.833 1 34.32 ? O3 NAD 300 A 1 HETATM 24 P PN NAD . . . B 2 22.69 10.477 25.913 1 34.36 ? PN NAD 300 A 1 HETATM 25 O O1N NAD . . . B 2 23.75 9.597 26.466 1 33.8 ? O1N NAD 300 A 1 HETATM 26 O O2N NAD . . . B 2 21.797 11.165 26.878 1 26.77 ? O2N NAD 300 A 1 HETATM 27 O O5D NAD . . . B 2 23.421 11.614 25.047 1 31.87 ? O5D NAD 300 A 1 HETATM 28 C C5D NAD . . . B 2 22.693 12.623 24.37 1 29.56 ? C5D NAD 300 A 1 HETATM 29 C C4D NAD . . . B 2 23.622 13.235 23.314 1 31.17 ? C4D NAD 300 A 1 HETATM 30 O O4D NAD . . . B 2 24.766 13.852 23.946 1 33.4 ? O4D NAD 300 A 1 HETATM 31 C C3D NAD . . . B 2 24.191 12.237 22.263 1 34.58 ? C3D NAD 300 A 1 HETATM 32 O O3D NAD . . . B 2 24.166 12.77 20.915 1 33.17 ? O3D NAD 300 A 1 HETATM 33 C C2D NAD . . . B 2 25.607 11.985 22.721 1 33.85 ? C2D NAD 300 A 1 HETATM 34 O O2D NAD . . . B 2 26.491 11.562 21.705 1 34.45 ? O2D NAD 300 A 1 HETATM 35 C C1D NAD . . . B 2 25.958 13.344 23.317 1 32.05 ? C1D NAD 300 A 1 HETATM 36 N N1N NAD . . . B 2 27.052 13.357 24.309 1 35.22 ? N1N NAD 300 A 1 HETATM 37 C C2N NAD . . . B 2 28.073 14.337 24.198 1 32.11 ? C2N NAD 300 A 1 HETATM 38 C C3N NAD . . . B 2 29.128 14.372 25.133 1 29.72 ? C3N NAD 300 A 1 HETATM 39 C C7N NAD . . . B 2 30.266 15.437 25.044 1 32.41 ? C7N NAD 300 A 1 HETATM 40 O O7N NAD . . . B 2 31.349 15.236 25.586 1 31.11 ? O7N NAD 300 A 1 HETATM 41 N N7N NAD . . . B 2 30.024 16.565 24.348 1 25.59 ? N7N NAD 300 A 1 HETATM 42 C C4N NAD . . . B 2 29.142 13.403 26.181 1 31.94 ? C4N NAD 300 A 1 HETATM 43 C C5N NAD . . . B 2 28.121 12.419 26.295 1 33.21 ? C5N NAD 300 A 1 HETATM 44 C C6N NAD . . . B 2 27.066 12.385 25.363 1 34.77 ? C6N NAD 300 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #