data_1J6P # _model_server_result.job_id lI039JrCmQmV8iU2jJR7RA _model_server_result.datetime_utc '2024-12-11 11:43:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1j6p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 1J6P # _exptl.entry_id 1J6P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1J6P _cell.length_a 113.782 _cell.length_b 113.782 _cell.length_c 81.305 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1J6P _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 197.076205 27.101667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 12 A HIS 0 1_555 A N MSE 13 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C MSE 13 A MSE 1 1_555 A N ILE 14 A ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C VAL 59 A VAL 47 1_555 A N MSE 60 A MSE 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 A C MSE 60 A MSE 48 1_555 A N PRO 61 A PRO 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale5 A C PRO 71 A PRO 59 1_555 A N MSE 72 A MSE 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale6 A C MSE 72 A MSE 60 1_555 A N THR 73 A THR 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale7 A C LYS 102 A LYS 90 1_555 A N MSE 103 A MSE 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale8 A C MSE 103 A MSE 91 1_555 A N ALA 104 A ALA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale9 A C GLN 112 A GLN 100 1_555 A N MSE 113 A MSE 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 A C MSE 113 A MSE 101 1_555 A N GLU 114 A GLU 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale11 A C GLU 114 A GLU 102 1_555 A N MSE 115 A MSE 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 A C MSE 115 A MSE 103 1_555 A N ALA 116 A ALA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 A C ASP 125 A ASP 113 1_555 A N MSE 126 A MSE 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale14 A C MSE 126 A MSE 114 1_555 A N TYR 127 A TYR 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale15 A C GLY 141 A GLY 129 1_555 A N MSE 142 A MSE 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale16 A C MSE 142 A MSE 130 1_555 A N ARG 143 A ARG 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale17 A C ARG 278 A ARG 266 1_555 A N MSE 279 A MSE 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale18 A C MSE 279 A MSE 267 1_555 A N ILE 280 A ILE 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale19 A C GLY 283 A GLY 271 1_555 A N MSE 284 A MSE 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale20 A C MSE 284 A MSE 272 1_555 A N LYS 285 A LYS 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale21 A C GLU 304 A GLU 292 1_555 A N MSE 305 A MSE 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale22 A C MSE 305 A MSE 293 1_555 A N ARG 306 A ARG 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale23 A C LYS 327 A LYS 315 1_555 A N MSE 328 A MSE 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale24 A C MSE 328 A MSE 316 1_555 A N VAL 329 A VAL 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale25 A C ALA 336 A ALA 324 1_555 A N MSE 337 A MSE 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale26 A C MSE 337 A MSE 325 1_555 A N GLY 338 A GLY 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale27 A C GLU 361 A GLU 349 1_555 A N MSE 362 A MSE 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale28 A C MSE 362 A MSE 350 1_555 A N PHE 363 A PHE 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale29 A C THR 383 A THR 371 1_555 A N MSE 384 A MSE 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale30 A C MSE 384 A MSE 372 1_555 A N VAL 385 A VAL 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 A NE2 HIS 67 A HIS 55 1_555 B NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc2 A NE2 HIS 69 A HIS 57 1_555 B NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc3 A NE2 HIS 212 A HIS 200 1_555 B NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc4 A OD1 ASP 291 A ASP 279 1_555 B NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc5 B NI NI . A NI 501 1_555 C O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc6 B NI NI . A NI 501 1_555 C O HOH . A HOH 657 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1J6P _atom_sites.fract_transf_matrix[1][1] 0.008789 _atom_sites.fract_transf_matrix[1][2] 0.005074 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012299 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 501 501 NI NI . C 3 HOH A 1 502 1 HOH HOH . C 3 HOH A 2 503 2 HOH HOH . C 3 HOH A 3 504 3 HOH HOH . C 3 HOH A 4 505 4 HOH HOH . C 3 HOH A 5 506 5 HOH HOH . C 3 HOH A 6 507 6 HOH HOH . C 3 HOH A 7 508 7 HOH HOH . C 3 HOH A 8 509 8 HOH HOH . C 3 HOH A 9 510 9 HOH HOH . C 3 HOH A 10 511 10 HOH HOH . C 3 HOH A 11 512 11 HOH HOH . C 3 HOH A 12 513 12 HOH HOH . C 3 HOH A 13 514 13 HOH HOH . C 3 HOH A 14 515 14 HOH HOH . C 3 HOH A 15 516 15 HOH HOH . C 3 HOH A 16 517 16 HOH HOH . C 3 HOH A 17 518 17 HOH HOH . C 3 HOH A 18 519 18 HOH HOH . C 3 HOH A 19 520 19 HOH HOH . C 3 HOH A 20 521 20 HOH HOH . C 3 HOH A 21 522 21 HOH HOH . C 3 HOH A 22 523 22 HOH HOH . C 3 HOH A 23 524 23 HOH HOH . C 3 HOH A 24 525 24 HOH HOH . C 3 HOH A 25 526 25 HOH HOH . C 3 HOH A 26 527 26 HOH HOH . C 3 HOH A 27 528 27 HOH HOH . C 3 HOH A 28 529 28 HOH HOH . C 3 HOH A 29 530 29 HOH HOH . C 3 HOH A 30 531 30 HOH HOH . C 3 HOH A 31 532 31 HOH HOH . C 3 HOH A 32 533 32 HOH HOH . C 3 HOH A 33 534 33 HOH HOH . C 3 HOH A 34 535 34 HOH HOH . C 3 HOH A 35 536 35 HOH HOH . C 3 HOH A 36 537 36 HOH HOH . C 3 HOH A 37 538 37 HOH HOH . C 3 HOH A 38 539 38 HOH HOH . C 3 HOH A 39 540 39 HOH HOH . C 3 HOH A 40 541 40 HOH HOH . C 3 HOH A 41 542 41 HOH HOH . C 3 HOH A 42 543 42 HOH HOH . C 3 HOH A 43 544 43 HOH HOH . C 3 HOH A 44 545 44 HOH HOH . C 3 HOH A 45 546 45 HOH HOH . C 3 HOH A 46 547 46 HOH HOH . C 3 HOH A 47 548 47 HOH HOH . C 3 HOH A 48 549 48 HOH HOH . C 3 HOH A 49 550 49 HOH HOH . C 3 HOH A 50 551 50 HOH HOH . C 3 HOH A 51 552 51 HOH HOH . C 3 HOH A 52 553 52 HOH HOH . C 3 HOH A 53 554 53 HOH HOH . C 3 HOH A 54 555 54 HOH HOH . C 3 HOH A 55 556 55 HOH HOH . C 3 HOH A 56 557 56 HOH HOH . C 3 HOH A 57 558 57 HOH HOH . C 3 HOH A 58 559 58 HOH HOH . C 3 HOH A 59 560 59 HOH HOH . C 3 HOH A 60 561 60 HOH HOH . C 3 HOH A 61 562 61 HOH HOH . C 3 HOH A 62 563 62 HOH HOH . C 3 HOH A 63 564 63 HOH HOH . C 3 HOH A 64 565 64 HOH HOH . C 3 HOH A 65 566 65 HOH HOH . C 3 HOH A 66 567 66 HOH HOH . C 3 HOH A 67 568 67 HOH HOH . C 3 HOH A 68 569 68 HOH HOH . C 3 HOH A 69 570 69 HOH HOH . C 3 HOH A 70 571 70 HOH HOH . C 3 HOH A 71 572 71 HOH HOH . C 3 HOH A 72 573 72 HOH HOH . C 3 HOH A 73 574 73 HOH HOH . C 3 HOH A 74 575 74 HOH HOH . C 3 HOH A 75 576 75 HOH HOH . C 3 HOH A 76 577 76 HOH HOH . C 3 HOH A 77 578 77 HOH HOH . C 3 HOH A 78 579 78 HOH HOH . C 3 HOH A 79 580 79 HOH HOH . C 3 HOH A 80 581 80 HOH HOH . C 3 HOH A 81 582 81 HOH HOH . C 3 HOH A 82 583 82 HOH HOH . C 3 HOH A 83 584 83 HOH HOH . C 3 HOH A 84 585 84 HOH HOH . C 3 HOH A 85 586 85 HOH HOH . C 3 HOH A 86 587 86 HOH HOH . C 3 HOH A 87 588 87 HOH HOH . C 3 HOH A 88 589 88 HOH HOH . C 3 HOH A 89 590 89 HOH HOH . C 3 HOH A 90 591 90 HOH HOH . C 3 HOH A 91 592 91 HOH HOH . C 3 HOH A 92 593 92 HOH HOH . C 3 HOH A 93 594 93 HOH HOH . C 3 HOH A 94 595 94 HOH HOH . C 3 HOH A 95 596 95 HOH HOH . C 3 HOH A 96 597 96 HOH HOH . C 3 HOH A 97 598 97 HOH HOH . C 3 HOH A 98 599 98 HOH HOH . C 3 HOH A 99 600 99 HOH HOH . C 3 HOH A 100 601 100 HOH HOH . C 3 HOH A 101 602 101 HOH HOH . C 3 HOH A 102 603 102 HOH HOH . C 3 HOH A 103 604 103 HOH HOH . C 3 HOH A 104 605 104 HOH HOH . C 3 HOH A 105 606 105 HOH HOH . C 3 HOH A 106 607 106 HOH HOH . C 3 HOH A 107 608 107 HOH HOH . C 3 HOH A 108 609 108 HOH HOH . C 3 HOH A 109 610 109 HOH HOH . C 3 HOH A 110 611 110 HOH HOH . C 3 HOH A 111 612 111 HOH HOH . C 3 HOH A 112 613 112 HOH HOH . C 3 HOH A 113 614 113 HOH HOH . C 3 HOH A 114 615 114 HOH HOH . C 3 HOH A 115 616 115 HOH HOH . C 3 HOH A 116 617 116 HOH HOH . C 3 HOH A 117 618 117 HOH HOH . C 3 HOH A 118 619 118 HOH HOH . C 3 HOH A 119 620 119 HOH HOH . C 3 HOH A 120 621 120 HOH HOH . C 3 HOH A 121 622 121 HOH HOH . C 3 HOH A 122 623 122 HOH HOH . C 3 HOH A 123 624 123 HOH HOH . C 3 HOH A 124 625 124 HOH HOH . C 3 HOH A 125 626 125 HOH HOH . C 3 HOH A 126 627 126 HOH HOH . C 3 HOH A 127 628 127 HOH HOH . C 3 HOH A 128 629 128 HOH HOH . C 3 HOH A 129 630 129 HOH HOH . C 3 HOH A 130 631 130 HOH HOH . C 3 HOH A 131 632 131 HOH HOH . C 3 HOH A 132 633 132 HOH HOH . C 3 HOH A 133 634 133 HOH HOH . C 3 HOH A 134 635 134 HOH HOH . C 3 HOH A 135 636 135 HOH HOH . C 3 HOH A 136 637 136 HOH HOH . C 3 HOH A 137 638 137 HOH HOH . C 3 HOH A 138 639 138 HOH HOH . C 3 HOH A 139 640 139 HOH HOH . C 3 HOH A 140 641 140 HOH HOH . C 3 HOH A 141 642 141 HOH HOH . C 3 HOH A 142 643 142 HOH HOH . C 3 HOH A 143 644 143 HOH HOH . C 3 HOH A 144 645 144 HOH HOH . C 3 HOH A 145 646 145 HOH HOH . C 3 HOH A 146 647 146 HOH HOH . C 3 HOH A 147 648 147 HOH HOH . C 3 HOH A 148 649 148 HOH HOH . C 3 HOH A 149 650 149 HOH HOH . C 3 HOH A 150 651 150 HOH HOH . C 3 HOH A 151 652 151 HOH HOH . C 3 HOH A 152 653 152 HOH HOH . C 3 HOH A 153 654 153 HOH HOH . C 3 HOH A 154 655 154 HOH HOH . C 3 HOH A 155 656 155 HOH HOH . C 3 HOH A 156 657 156 HOH HOH . C 3 HOH A 157 658 157 HOH HOH . C 3 HOH A 158 659 158 HOH HOH . C 3 HOH A 159 660 159 HOH HOH . C 3 HOH A 160 661 160 HOH HOH . C 3 HOH A 161 662 161 HOH HOH . C 3 HOH A 162 663 162 HOH HOH . C 3 HOH A 163 664 163 HOH HOH . C 3 HOH A 164 665 164 HOH HOH . C 3 HOH A 165 666 165 HOH HOH . C 3 HOH A 166 667 166 HOH HOH . C 3 HOH A 167 668 167 HOH HOH . C 3 HOH A 168 669 168 HOH HOH . C 3 HOH A 169 670 169 HOH HOH . C 3 HOH A 170 671 170 HOH HOH . C 3 HOH A 171 672 171 HOH HOH . C 3 HOH A 172 673 172 HOH HOH . C 3 HOH A 173 674 173 HOH HOH . C 3 HOH A 174 675 174 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 107.609 _atom_site.Cartn_y 80.66 _atom_site.Cartn_z 9.561 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.21 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #