data_1J6W # _model_server_result.job_id VKrf7TIvbxVSQn4r8bVTmA _model_server_result.datetime_utc '2024-11-18 05:35:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1j6w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 1J6W # _exptl.entry_id 1J6W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 149.211 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHIONINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1J6W _cell.length_a 129.669 _cell.length_b 129.669 _cell.length_c 53.77 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1J6W _symmetry.cell_setting tetragonal _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 13 A LYS 13 1_555 A N MSE 14 A MSE 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C MSE 14 A MSE 14 1_555 A N ASN 15 A ASN 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A C THR 24 A THR 24 1_555 A N MSE 25 A MSE 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale4 A C MSE 25 A MSE 25 1_555 A N LEU 26 A LEU 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C PHE 63 A PHE 63 1_555 A N MSE 64 A MSE 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C MSE 64 A MSE 64 1_555 A N ARG 65 A ARG 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 A C PRO 80 A PRO 80 1_555 A N MSE 81 A MSE 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale8 A C MSE 81 A MSE 81 1_555 A N GLY 82 A GLY 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 A C TYR 88 A TYR 88 1_555 A N MSE 89 A MSE 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale10 A C MSE 89 A MSE 89 1_555 A N SER 90 A SER 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 A C SER 107 A SER 107 1_555 A N MSE 108 A MSE 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale12 A C MSE 108 A MSE 108 1_555 A N GLN 109 A GLN 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 C ZN ZN . A ZN 176 1_555 A NE2 HIS 54 A HIS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc2 C ZN ZN . A ZN 176 1_555 A NE2 HIS 58 A HIS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc3 C ZN ZN . A ZN 176 1_555 A SG CYS 128 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? covale ? covale13 B C LYS 13 B LYS 13 1_555 B N MSE 14 B MSE 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale14 B C MSE 14 B MSE 14 1_555 B N ASN 15 B ASN 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale15 B C THR 24 B THR 24 1_555 B N MSE 25 B MSE 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale16 B C MSE 25 B MSE 25 1_555 B N LEU 26 B LEU 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale17 B C PHE 63 B PHE 63 1_555 B N MSE 64 B MSE 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale18 B C MSE 64 B MSE 64 1_555 B N ARG 65 B ARG 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale19 B C PRO 80 B PRO 80 1_555 B N MSE 81 B MSE 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale20 B C MSE 81 B MSE 81 1_555 B N GLY 82 B GLY 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale21 B C TYR 88 B TYR 88 1_555 B N MSE 89 B MSE 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale22 B C MSE 89 B MSE 89 1_555 B N SER 90 B SER 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale23 B C SER 107 B SER 107 1_555 B N MSE 108 B MSE 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale24 B C MSE 108 B MSE 108 1_555 B N GLN 109 B GLN 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc4 E ZN ZN . B ZN 176 1_555 B NE2 HIS 54 B HIS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc5 E ZN ZN . B ZN 176 1_555 B NE2 HIS 58 B HIS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc6 E ZN ZN . B ZN 176 1_555 B SG CYS 128 B CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? # _chem_comp.formula 'C5 H11 N O2 S' _chem_comp.formula_weight 149.211 _chem_comp.id MET _chem_comp.mon_nstd_flag y _chem_comp.name METHIONINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1J6W _atom_sites.fract_transf_matrix[1][1] 0.007712 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007712 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018598 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 176 2 ZN ZN . D 3 MET A 1 601 601 MET MET . E 2 ZN B 1 176 1 ZN ZN . F 3 MET B 1 501 501 MET MET . G 4 HOH A 1 602 4 HOH HOH . G 4 HOH A 2 603 6 HOH HOH . G 4 HOH A 3 604 7 HOH HOH . G 4 HOH A 4 605 8 HOH HOH . G 4 HOH A 5 606 9 HOH HOH . G 4 HOH A 6 607 13 HOH HOH . G 4 HOH A 7 608 14 HOH HOH . G 4 HOH A 8 609 15 HOH HOH . G 4 HOH A 9 610 17 HOH HOH . G 4 HOH A 10 611 19 HOH HOH . G 4 HOH A 11 612 25 HOH HOH . G 4 HOH A 12 613 27 HOH HOH . G 4 HOH A 13 614 29 HOH HOH . G 4 HOH A 14 615 30 HOH HOH . G 4 HOH A 15 616 31 HOH HOH . G 4 HOH A 16 617 32 HOH HOH . G 4 HOH A 17 618 33 HOH HOH . G 4 HOH A 18 619 35 HOH HOH . G 4 HOH A 19 620 36 HOH HOH . G 4 HOH A 20 621 37 HOH HOH . G 4 HOH A 21 622 38 HOH HOH . G 4 HOH A 22 623 41 HOH HOH . G 4 HOH A 23 624 42 HOH HOH . G 4 HOH A 24 625 44 HOH HOH . G 4 HOH A 25 626 47 HOH HOH . G 4 HOH A 26 627 48 HOH HOH . G 4 HOH A 27 628 49 HOH HOH . G 4 HOH A 28 629 52 HOH HOH . G 4 HOH A 29 630 53 HOH HOH . G 4 HOH A 30 631 55 HOH HOH . G 4 HOH A 31 632 56 HOH HOH . G 4 HOH A 32 633 57 HOH HOH . G 4 HOH A 33 634 59 HOH HOH . H 4 HOH B 1 502 3 HOH HOH . H 4 HOH B 2 503 5 HOH HOH . H 4 HOH B 3 504 10 HOH HOH . H 4 HOH B 4 505 11 HOH HOH . H 4 HOH B 5 506 12 HOH HOH . H 4 HOH B 6 507 16 HOH HOH . H 4 HOH B 7 508 18 HOH HOH . H 4 HOH B 8 509 20 HOH HOH . H 4 HOH B 9 510 21 HOH HOH . H 4 HOH B 10 511 22 HOH HOH . H 4 HOH B 11 512 23 HOH HOH . H 4 HOH B 12 513 24 HOH HOH . H 4 HOH B 13 514 26 HOH HOH . H 4 HOH B 14 515 28 HOH HOH . H 4 HOH B 15 516 34 HOH HOH . H 4 HOH B 16 517 39 HOH HOH . H 4 HOH B 17 518 40 HOH HOH . H 4 HOH B 18 519 43 HOH HOH . H 4 HOH B 19 520 45 HOH HOH . H 4 HOH B 20 521 46 HOH HOH . H 4 HOH B 21 522 50 HOH HOH . H 4 HOH B 22 523 51 HOH HOH . H 4 HOH B 23 524 54 HOH HOH . H 4 HOH B 24 525 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N MET . . . D 3 -13.297 41.519 -13.929 1 26.75 ? N MET 601 A 1 HETATM 2 C CA MET . . . D 3 -12.551 40.941 -15.08 1 29.66 ? CA MET 601 A 1 HETATM 3 C C MET . . . D 3 -12.133 42.049 -16.055 1 29.72 ? C MET 601 A 1 HETATM 4 O O MET . . . D 3 -12.648 43.176 -15.912 1 23.81 ? O MET 601 A 1 HETATM 5 C CB MET . . . D 3 -13.447 39.917 -15.778 1 33.27 ? CB MET 601 A 1 HETATM 6 C CG MET . . . D 3 -12.865 39.287 -17.007 1 36.19 ? CG MET 601 A 1 HETATM 7 S SD MET . . . D 3 -13.947 37.982 -17.561 1 40.55 ? SD MET 601 A 1 HETATM 8 C CE MET . . . D 3 -13.325 36.607 -16.625 1 39.96 ? CE MET 601 A 1 HETATM 9 O OXT MET . . . D 3 -11.294 41.786 -16.945 1 32.59 ? OXT MET 601 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #