data_1J6X # _model_server_result.job_id DHaZuU45KJe4mWvNvZ2C5Q _model_server_result.datetime_utc '2024-11-27 04:13:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1j6x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 1J6X # _exptl.entry_id 1J6X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 149.211 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHIONINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1J6X _cell.length_a 71.14 _cell.length_b 71.14 _cell.length_c 130.14 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1J6X _symmetry.cell_setting tetragonal _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N LYS 2 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C LYS 2 A LYS 2 1_555 A N MSE 3 A MSE 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C MSE 3 A MSE 3 1_555 A N ASN 4 A ASN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C HIS 48 A HIS 48 1_555 A N MSE 49 A MSE 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C MSE 49 A MSE 49 1_555 A N ASP 50 A ASP 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C ASP 50 A ASP 50 1_555 A N MSE 51 A MSE 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale7 A C MSE 51 A MSE 51 1_555 A N PRO 52 A PRO 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale8 A C PRO 77 A PRO 77 1_555 A N MSE 78 A MSE 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 A C MSE 78 A MSE 78 1_555 A N GLY 79 A GLY 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 A C THR 104 A THR 104 1_555 A N MSE 105 A MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale11 A C MSE 105 A MSE 105 1_555 A N GLN 106 A GLN 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 B C MSE 1 B MSE 1 1_555 B N LYS 2 B LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale13 B C LYS 2 B LYS 2 1_555 B N MSE 3 B MSE 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale14 B C MSE 3 B MSE 3 1_555 B N ASN 4 B ASN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale15 B C HIS 48 B HIS 48 1_555 B N MSE 49 B MSE 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale16 B C MSE 49 B MSE 49 1_555 B N ASP 50 B ASP 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale17 B C ASP 50 B ASP 50 1_555 B N MSE 51 B MSE 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale18 B C MSE 51 B MSE 51 1_555 B N PRO 52 B PRO 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale19 B C PRO 77 B PRO 77 1_555 B N MSE 78 B MSE 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale20 B C MSE 78 B MSE 78 1_555 B N GLY 79 B GLY 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale21 B C THR 104 B THR 104 1_555 B N MSE 105 B MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale22 B C MSE 105 B MSE 105 1_555 B N GLN 106 B GLN 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? metalc ? metalc1 A NE2 HIS 55 A HIS 55 1_555 C ZN ZN . A ZN 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc2 A NE2 HIS 59 A HIS 59 1_555 C ZN ZN . A ZN 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc3 A SG CYS 122 A CYS 122 1_555 C ZN ZN . A ZN 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc4 B NE2 HIS 55 B HIS 55 1_555 E ZN ZN . B ZN 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc5 B NE2 HIS 59 B HIS 59 1_555 E ZN ZN . B ZN 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc6 B SG CYS 122 B CYS 122 1_555 E ZN ZN . B ZN 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc7 E ZN ZN . B ZN 161 1_555 H O HOH . B HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? # _chem_comp.formula 'C5 H11 N O2 S' _chem_comp.formula_weight 149.211 _chem_comp.id MET _chem_comp.mon_nstd_flag y _chem_comp.name METHIONINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA MET sing 218 n n N H MET sing 219 n n N H2 MET sing 220 n n CA C MET sing 221 n n CA CB MET sing 222 n n CA HA MET sing 223 n n C O MET doub 224 n n C OXT MET sing 225 n n CB CG MET sing 226 n n CB HB2 MET sing 227 n n CB HB3 MET sing 228 n n CG SD MET sing 229 n n CG HG2 MET sing 230 n n CG HG3 MET sing 231 n n SD CE MET sing 232 n n CE HE1 MET sing 233 n n CE HE2 MET sing 234 n n CE HE3 MET sing 235 n n OXT HXT MET sing 236 n n # _atom_sites.entry_id 1J6X _atom_sites.fract_transf_matrix[1][1] 0.014057 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014057 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007684 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 161 1 ZN ZN . D 3 MET A 1 601 601 MET MET . E 2 ZN B 1 161 2 ZN ZN . F 3 MET B 1 501 501 MET MET . G 4 HOH A 1 602 4 HOH HOH . G 4 HOH A 2 603 5 HOH HOH . G 4 HOH A 3 604 8 HOH HOH . G 4 HOH A 4 605 9 HOH HOH . G 4 HOH A 5 606 10 HOH HOH . G 4 HOH A 6 607 15 HOH HOH . G 4 HOH A 7 608 16 HOH HOH . G 4 HOH A 8 609 17 HOH HOH . G 4 HOH A 9 610 18 HOH HOH . G 4 HOH A 10 611 20 HOH HOH . H 4 HOH B 1 502 3 HOH HOH . H 4 HOH B 2 503 6 HOH HOH . H 4 HOH B 3 504 7 HOH HOH . H 4 HOH B 4 505 11 HOH HOH . H 4 HOH B 5 506 12 HOH HOH . H 4 HOH B 6 507 13 HOH HOH . H 4 HOH B 7 508 14 HOH HOH . H 4 HOH B 8 509 19 HOH HOH . H 4 HOH B 9 510 21 HOH HOH . H 4 HOH B 10 511 22 HOH HOH . H 4 HOH B 11 512 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N MET . . . F 3 -19.898 14.353 7.525 1 43.63 ? N MET 501 B 1 HETATM 2 C CA MET . . . F 3 -18.787 13.524 8.08 1 43.97 ? CA MET 501 B 1 HETATM 3 C C MET . . . F 3 -19.276 12.245 8.775 1 43.31 ? C MET 501 B 1 HETATM 4 O O MET . . . F 3 -20.168 12.329 9.649 1 43.15 ? O MET 501 B 1 HETATM 5 C CB MET . . . F 3 -17.972 14.371 9.05 1 44.9 ? CB MET 501 B 1 HETATM 6 C CG MET . . . F 3 -16.883 13.636 9.766 1 45.04 ? CG MET 501 B 1 HETATM 7 S SD MET . . . F 3 -15.936 14.786 10.789 1 50.24 ? SD MET 501 B 1 HETATM 8 C CE MET . . . F 3 -14.811 15.461 9.556 1 44.61 ? CE MET 501 B 1 HETATM 9 O OXT MET . . . F 3 -18.762 11.16 8.434 1 43.79 ? OXT MET 501 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #