data_1J84 # _model_server_result.job_id 6RDJOtLF9q5NVeWb7NzOhQ _model_server_result.datetime_utc '2024-11-12 20:38:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1j84 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":366}' # _entry.id 1J84 # _exptl.entry_id 1J84 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1J84 _cell.length_a 69.095 _cell.length_b 69.095 _cell.length_c 143.59 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1J84 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 BGC BGC C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BGC BGC C1 O1 . O4 HO4 . sing 3 ? 2 4 3 BGC BGC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BGC 1 B 1 BGC ? 206 BGC 2 n B BGC 2 B 2 BGC ? 207 BGC 2 n B BGC 3 B 3 BGC ? 208 BGC 2 n B BGC 4 B 4 BGC ? 209 BGC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O4 BGC . B BGC 1 1_555 B C1 BGC . B BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.384 ? covale ? covale2 B O4 BGC . B BGC 2 1_555 B C1 BGC . B BGC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? covale ? covale3 B O4 BGC . B BGC 3 1_555 B C1 BGC . B BGC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? metalc ? metalc1 A O ASP 14 A ASP 40 1_555 C CA CA . A CA 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc2 A OD1 ASN 16 A ASN 42 1_555 C CA CA . A CA 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc3 A O ASN 41 A ASN 67 1_555 C CA CA . A CA 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc4 A OD1 ASP 174 A ASP 200 1_555 C CA CA . A CA 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc5 A OD2 ASP 174 A ASP 200 1_555 C CA CA . A CA 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1J84 _atom_sites.fract_transf_matrix[1][1] 0.014473 _atom_sites.fract_transf_matrix[1][2] 0.008356 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016712 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006964 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 366 366 CA CAL . D 4 HOH A 1 210 210 HOH WAT . D 4 HOH A 2 211 211 HOH WAT . D 4 HOH A 3 212 212 HOH WAT . D 4 HOH A 4 213 213 HOH WAT . D 4 HOH A 5 214 214 HOH WAT . D 4 HOH A 6 215 215 HOH WAT . D 4 HOH A 7 216 216 HOH WAT . D 4 HOH A 8 217 217 HOH WAT . D 4 HOH A 9 218 218 HOH WAT . D 4 HOH A 10 219 219 HOH WAT . D 4 HOH A 11 220 220 HOH WAT . D 4 HOH A 12 221 221 HOH WAT . D 4 HOH A 13 222 222 HOH WAT . D 4 HOH A 14 223 223 HOH WAT . D 4 HOH A 15 224 224 HOH WAT . D 4 HOH A 16 225 225 HOH WAT . D 4 HOH A 17 226 226 HOH WAT . D 4 HOH A 18 227 227 HOH WAT . D 4 HOH A 19 228 228 HOH WAT . D 4 HOH A 20 229 229 HOH WAT . D 4 HOH A 21 230 230 HOH WAT . D 4 HOH A 22 231 231 HOH WAT . D 4 HOH A 23 232 232 HOH WAT . D 4 HOH A 24 233 233 HOH WAT . D 4 HOH A 25 234 234 HOH WAT . D 4 HOH A 26 235 235 HOH WAT . D 4 HOH A 27 236 236 HOH WAT . D 4 HOH A 28 237 237 HOH WAT . D 4 HOH A 29 238 238 HOH WAT . D 4 HOH A 30 239 239 HOH WAT . D 4 HOH A 31 240 240 HOH WAT . D 4 HOH A 32 241 241 HOH WAT . D 4 HOH A 33 242 242 HOH WAT . D 4 HOH A 34 243 243 HOH WAT . D 4 HOH A 35 244 244 HOH WAT . D 4 HOH A 36 245 245 HOH WAT . D 4 HOH A 37 246 246 HOH WAT . D 4 HOH A 38 247 247 HOH WAT . D 4 HOH A 39 248 248 HOH WAT . D 4 HOH A 40 249 249 HOH WAT . D 4 HOH A 41 250 250 HOH WAT . D 4 HOH A 42 251 251 HOH WAT . D 4 HOH A 43 252 252 HOH WAT . D 4 HOH A 44 253 253 HOH WAT . D 4 HOH A 45 254 254 HOH WAT . D 4 HOH A 46 255 255 HOH WAT . D 4 HOH A 47 256 256 HOH WAT . D 4 HOH A 48 257 257 HOH WAT . D 4 HOH A 49 258 258 HOH WAT . D 4 HOH A 50 259 259 HOH WAT . D 4 HOH A 51 260 260 HOH WAT . D 4 HOH A 52 261 261 HOH WAT . D 4 HOH A 53 262 262 HOH WAT . D 4 HOH A 54 263 263 HOH WAT . D 4 HOH A 55 264 264 HOH WAT . D 4 HOH A 56 265 265 HOH WAT . D 4 HOH A 57 266 266 HOH WAT . D 4 HOH A 58 267 267 HOH WAT . D 4 HOH A 59 268 268 HOH WAT . D 4 HOH A 60 269 269 HOH WAT . D 4 HOH A 61 270 270 HOH WAT . D 4 HOH A 62 271 271 HOH WAT . D 4 HOH A 63 272 272 HOH WAT . D 4 HOH A 64 273 273 HOH WAT . D 4 HOH A 65 274 274 HOH WAT . D 4 HOH A 66 275 275 HOH WAT . D 4 HOH A 67 276 276 HOH WAT . D 4 HOH A 68 277 277 HOH WAT . D 4 HOH A 69 278 278 HOH WAT . D 4 HOH A 70 279 279 HOH WAT . D 4 HOH A 71 280 280 HOH WAT . D 4 HOH A 72 281 281 HOH WAT . D 4 HOH A 73 282 282 HOH WAT . D 4 HOH A 74 283 283 HOH WAT . D 4 HOH A 75 284 284 HOH WAT . D 4 HOH A 76 285 285 HOH WAT . D 4 HOH A 77 286 286 HOH WAT . D 4 HOH A 78 287 287 HOH WAT . D 4 HOH A 79 288 288 HOH WAT . D 4 HOH A 80 289 289 HOH WAT . D 4 HOH A 81 290 290 HOH WAT . D 4 HOH A 82 291 291 HOH WAT . D 4 HOH A 83 292 292 HOH WAT . D 4 HOH A 84 293 293 HOH WAT . D 4 HOH A 85 294 294 HOH WAT . D 4 HOH A 86 295 295 HOH WAT . D 4 HOH A 87 296 296 HOH WAT . D 4 HOH A 88 297 297 HOH WAT . D 4 HOH A 89 298 298 HOH WAT . D 4 HOH A 90 299 299 HOH WAT . D 4 HOH A 91 300 300 HOH WAT . D 4 HOH A 92 301 301 HOH WAT . D 4 HOH A 93 302 302 HOH WAT . D 4 HOH A 94 303 303 HOH WAT . D 4 HOH A 95 304 304 HOH WAT . D 4 HOH A 96 305 305 HOH WAT . D 4 HOH A 97 306 306 HOH WAT . D 4 HOH A 98 307 307 HOH WAT . D 4 HOH A 99 308 308 HOH WAT . D 4 HOH A 100 309 309 HOH WAT . D 4 HOH A 101 310 310 HOH WAT . D 4 HOH A 102 311 311 HOH WAT . D 4 HOH A 103 312 312 HOH WAT . D 4 HOH A 104 313 313 HOH WAT . D 4 HOH A 105 314 314 HOH WAT . D 4 HOH A 106 315 315 HOH WAT . D 4 HOH A 107 316 316 HOH WAT . D 4 HOH A 108 317 317 HOH WAT . D 4 HOH A 109 318 318 HOH WAT . D 4 HOH A 110 319 319 HOH WAT . D 4 HOH A 111 320 320 HOH WAT . D 4 HOH A 112 321 321 HOH WAT . D 4 HOH A 113 322 322 HOH WAT . D 4 HOH A 114 323 323 HOH WAT . D 4 HOH A 115 324 324 HOH WAT . D 4 HOH A 116 325 325 HOH WAT . D 4 HOH A 117 326 326 HOH WAT . D 4 HOH A 118 327 327 HOH WAT . D 4 HOH A 119 328 328 HOH WAT . D 4 HOH A 120 329 329 HOH WAT . D 4 HOH A 121 330 330 HOH WAT . D 4 HOH A 122 331 331 HOH WAT . D 4 HOH A 123 332 332 HOH WAT . D 4 HOH A 124 333 333 HOH WAT . D 4 HOH A 125 334 334 HOH WAT . D 4 HOH A 126 335 335 HOH WAT . D 4 HOH A 127 336 336 HOH WAT . D 4 HOH A 128 337 337 HOH WAT . D 4 HOH A 129 338 338 HOH WAT . D 4 HOH A 130 339 339 HOH WAT . D 4 HOH A 131 340 340 HOH WAT . D 4 HOH A 132 341 341 HOH WAT . D 4 HOH A 133 342 342 HOH WAT . D 4 HOH A 134 343 343 HOH WAT . D 4 HOH A 135 344 344 HOH WAT . D 4 HOH A 136 345 345 HOH WAT . D 4 HOH A 137 346 346 HOH WAT . D 4 HOH A 138 347 347 HOH WAT . D 4 HOH A 139 348 348 HOH WAT . D 4 HOH A 140 349 349 HOH WAT . D 4 HOH A 141 350 350 HOH WAT . D 4 HOH A 142 351 351 HOH WAT . D 4 HOH A 143 352 352 HOH WAT . D 4 HOH A 144 353 353 HOH WAT . D 4 HOH A 145 354 354 HOH WAT . D 4 HOH A 146 355 355 HOH WAT . D 4 HOH A 147 356 356 HOH WAT . D 4 HOH A 148 357 357 HOH WAT . D 4 HOH A 149 358 358 HOH WAT . D 4 HOH A 150 359 359 HOH WAT . D 4 HOH A 151 360 360 HOH WAT . D 4 HOH A 152 361 361 HOH WAT . D 4 HOH A 153 362 362 HOH WAT . D 4 HOH A 154 363 363 HOH WAT . D 4 HOH A 155 364 364 HOH WAT . D 4 HOH A 156 365 365 HOH WAT . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 17.559 _atom_site.Cartn_y 33.716 _atom_site.Cartn_z 31.816 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 4.69 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 366 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #