data_1J86 # _model_server_result.job_id V_fqhX-ab0HVY6obLbIPdA _model_server_result.datetime_utc '2024-11-21 19:33:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1j86 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":366}' # _entry.id 1J86 # _exptl.entry_id 1J86 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 7 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.74 _cell.angle_gamma 90 _cell.entry_id 1J86 _cell.length_a 136.9 _cell.length_b 73.79 _cell.length_c 79.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1J86 _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I,J 1 1 B,F,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 I N N ? 7 J N N ? 7 K N N ? 7 L N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 3 4 3 MAN BMA C1 O1 . O6 HO6 . sing 5 ? 4 2 1 FCA NAG C1 O1 . O3 HO3 . sing 6 ? 4 3 1 NAG NAG C1 O1 . O4 HO4 . sing 7 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 8 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 9 ? 5 4 3 MAN BMA C1 O1 . O3 HO3 . sing 10 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 11 ? 6 3 1 FCA NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG C 221 NAG 2 n C NAG 2 C 2 NAG C 222 NAG 3 n D NAG 1 D 1 NAG C 242 NAG 3 n D NAG 2 D 2 NAG C 243 NAG 3 n D BMA 3 D 3 BMA C 244 BMA 3 n D MAN 4 D 4 MAN C 246 MAN 4 n E NAG 1 E 1 NAG C 274 NAG 4 n E FCA 2 E 2 FCA C 275 FCA 4 n E NAG 3 E 3 NAG C 276 NAG 5 n F NAG 1 F 1 NAG D 242 NAG 5 n F NAG 2 F 2 NAG D 243 NAG 5 n F BMA 3 F 3 BMA D 244 BMA 5 n F MAN 4 F 4 MAN D 245 MAN 6 n G NAG 1 G 1 NAG D 335 NAG 6 n G NAG 2 G 2 NAG D 336 NAG 6 n G FCA 3 G 3 FCA D 337 FCA 2 n H NAG 1 H 1 NAG D 340 NAG 2 n H NAG 2 H 2 NAG D 341 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 68 A CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 107 A CYS 107 1_555 A SG CYS 151 A CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 B SG CYS 26 B CYS 26 1_555 B SG CYS 68 B CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 B SG CYS 107 B CYS 107 1_555 B SG CYS 151 B CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? covale ? covale1 A ND2 ASN 21 A ASN 21 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale2 A ND2 ASN 42 A ASN 42 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale3 A ND2 ASN 74 A ASN 74 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale4 A ND2 ASN 140 A ASN 140 1_555 I C1 NAG . A NAG 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale5 A ND2 ASN 166 A ASN 166 1_555 J C1 NAG . A NAG 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale6 B ND2 ASN 21 B ASN 21 1_555 K C1 NAG . B NAG 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale7 B ND2 ASN 42 B ASN 42 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale8 B ND2 ASN 135 B ASN 135 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale9 B ND2 ASN 140 B ASN 140 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale10 B ND2 ASN 166 B ASN 166 1_555 L C1 NAG . B NAG 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale11 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? covale ? covale12 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 ? covale ? covale13 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? covale ? covale14 D O6 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? covale ? covale15 E O3 NAG . E NAG 1 1_555 E C1 FCA . E FCA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 ? covale ? covale16 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 ? covale ? covale17 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 ? covale ? covale18 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? covale ? covale19 F O3 BMA . F BMA 3 1_555 F C1 MAN . F MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? covale ? covale20 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.384 ? covale ? covale21 G O6 NAG . G NAG 1 1_555 G C1 FCA . G FCA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? covale ? covale22 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 306 n n C1 O1 NAG sing 307 n n C1 O5 NAG sing 308 n n C1 H1 NAG sing 309 n n C2 C3 NAG sing 310 n n C2 N2 NAG sing 311 n n C2 H2 NAG sing 312 n n C3 C4 NAG sing 313 n n C3 O3 NAG sing 314 n n C3 H3 NAG sing 315 n n C4 C5 NAG sing 316 n n C4 O4 NAG sing 317 n n C4 H4 NAG sing 318 n n C5 C6 NAG sing 319 n n C5 O5 NAG sing 320 n n C5 H5 NAG sing 321 n n C6 O6 NAG sing 322 n n C6 H61 NAG sing 323 n n C6 H62 NAG sing 324 n n C7 C8 NAG sing 325 n n C7 N2 NAG sing 326 n n C7 O7 NAG doub 327 n n C8 H81 NAG sing 328 n n C8 H82 NAG sing 329 n n C8 H83 NAG sing 330 n n N2 HN2 NAG sing 331 n n O1 HO1 NAG sing 332 n n O3 HO3 NAG sing 333 n n O4 HO4 NAG sing 334 n n O6 HO6 NAG sing 335 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1J86 _atom_sites.fract_transf_matrix[1][1] 0.007305 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003842 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013552 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01423 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 7 NAG A 1 340 340 NAG NAG . J 7 NAG A 1 366 366 NAG NAG . K 7 NAG B 1 221 221 NAG NAG . L 7 NAG B 1 366 366 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . L 7 -8.297 13.985 29.329 1 142.42 ? C1 NAG 366 B 1 HETATM 2 C C2 NAG . . . L 7 -8.473 13.037 30.52 1 147.11 ? C2 NAG 366 B 1 HETATM 3 C C3 NAG . . . L 7 -9.589 12.037 30.193 1 147.52 ? C3 NAG 366 B 1 HETATM 4 C C4 NAG . . . L 7 -10.877 12.787 29.837 1 149.58 ? C4 NAG 366 B 1 HETATM 5 C C5 NAG . . . L 7 -10.613 13.825 28.729 1 147.82 ? C5 NAG 366 B 1 HETATM 6 C C6 NAG . . . L 7 -11.815 14.717 28.466 1 148.05 ? C6 NAG 366 B 1 HETATM 7 C C7 NAG . . . L 7 -6.462 12.736 31.81 1 154.71 ? C7 NAG 366 B 1 HETATM 8 C C8 NAG . . . L 7 -5.182 11.95 32.051 1 154.08 ? C8 NAG 366 B 1 HETATM 9 N N2 NAG . . . L 7 -7.236 12.337 30.804 1 154 ? N2 NAG 366 B 1 HETATM 10 O O3 NAG . . . L 7 -9.823 11.183 31.304 1 142.3 ? O3 NAG 366 B 1 HETATM 11 O O4 NAG . . . L 7 -11.862 11.858 29.404 1 148.34 ? O4 NAG 366 B 1 HETATM 12 O O5 NAG . . . L 7 -9.52 14.697 29.099 1 145.3 ? O5 NAG 366 B 1 HETATM 13 O O6 NAG . . . L 7 -11.46 16.094 28.51 1 135.2 ? O6 NAG 366 B 1 HETATM 14 O O7 NAG . . . L 7 -6.739 13.697 32.532 1 151.46 ? O7 NAG 366 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 14 #